IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2554	 35.31	+1	2924929..2925636	-	235	18311536	glpF	CPE2554	-	glycerol uptake facilitator protein
2555	 28.83	0	2925903..2926346	-	147	18311537	-	CPE2555	-	hypothetical protein
2556	 28.23	0	2926607..2927350	-	247	18311538	-	CPE2556	-	2-phosphosulfolactate phosphatase
2557	 31.94	0	2927377..2928312	-	311	18311539	-	CPE2557	-	radical SAM protein family protein
2558	 28.64	0	2928405..2929490	-	361	18311540	-	CPE2558	-	hypothetical protein
2559	 27.64	0	2929650..2930702	+	350	18311541	-	CPE2559	-	hypothetical protein
2560	 32.35	0	2930754..2932070	-	438	18311542	-	CPE2560	-	spore cortex-lytic enzyme SleC
2561	 31.96	0	2932193..2933941	-	582	18311543	-	CPE2561	-	Ser-type protease
2562	 31.27	0	2933944..2935641	-	565	18311544	-	CPE2562	-	protease CspB
2563	 32.01	0	2935657..2937393	-	578	18311545	-	CPE2563	-	Ser-type protease
2564	 27.98	0	2937534..2938205	-	223	18311546	-	CPE2564	-	hypothetical protein
2565	 29.33	0	2938206..2938580	-	124	18311547	-	CPE2565	-	hypothetical protein
2566	 33.14	+1	2938609..2939121	-	170	18311548	-	CPE2566	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2567	 25.19	-1	2939362..2939631	-	89	18311549	-	CPE2567	-	hypothetical protein
2568	 30.91	0	2939866..2940648	-	260	18311550	-	CPE2568	-	glutamate racemase
2569	 29.86	0	2940944..2942845	+	633	18311551	-	CPE2569	-	glutamine synthetase
2570	 26.67	0	2942935..2943219	-	94	18311552	-	CPE2570	-	hypothetical protein
2571	 26.32	0	2943457..2944098	-	213	18311553	-	CPE2571	-	hypothetical protein
2572	 32.96	+1	2944713..2947916	-	1067	18311554	carB	CPE2572	-	carbamoyl phosphate synthase large subunit
2573	 32.00	0	2947929..2948978	-	349	18311555	carA	CPE2573	-	carbamoyl phosphate synthase small subunit
2574	 33.64	+1	2949636..2950292	+	218	18311556	-	CPE2574	-	hypothetical protein
2575	 31.64	0	2950548..2952020	-	490	18311557	-	CPE2575	-	[Fe] hydrogenase
2576	 30.74	0	2952091..2952708	-	205	18311558	-	CPE2576	-	3-methyladenine DNA glycosylase
2577	 30.77	0	2953008..2953319	-	103	18311559	-	CPE2577	-	PTS system
2578	 30.93	0	2953420..2954667	-	415	18311560	proA	CPE2578	-	gamma-glutamyl phosphate reductase
2579	 30.62	0	2954670..2955479	-	269	18311561	proB	CPE2579	-	gamma-glutamyl kinase
2580	 33.56	+1	2955566..2956444	-	292	18311562	-	CPE2580	-	oxidoreductase, short chain dehydrogenase/reductase family
2581	 27.78	0	2956508..2957281	-	257	18311563	-	CPE2581	-	oxidoreductase, short-chain dehydrogenase/reductase family
2582	 30.39	0	2957466..2958758	+	430	18311564	-	CPE2582	-	hypothetical protein
2583	 28.07	0	2958849..2959076	+	75	18311565	-	CPE2583	-	hypothetical protein
2584	 32.12	0	2959142..2960785	-	547	161485638	-	CPE2584	-	hydroxylamine reductase
2585	 30.91	0	2961168..2962445	+	425	18311567	-	CPE2585	-	nucleoside recognition domain protein
2586	 27.25	0	2962484..2963272	-	262	18311568	-	CPE2586	-	hypothetical protein
2587	 32.82	+1	2963405..2963989	+	194	18311569	-	CPE2587	-	maltose transacetylase
2588	 28.27	0	2964045..2964518	+	157	18311570	-	CPE2588	-	methionine sulfoxide reductase A
2589	 28.42	0	2964520..2966004	-	494	18311571	-	CPE2589	-	site specific DNA-methyltransferase
2590	 28.84	0	2966133..2968289	-	718	18311572	-	CPE2590	-	phage infection protein
2591	 29.22	0	2968312..2970477	-	721	18311573	-	CPE2591	-	phage infection protein
2592	 32.15	0	2970830..2971168	-	112	18311574	phnA	CPE2592	-	phnA family protein
2593	 27.14	0	2971382..2972188	-	268	18311575	-	CPE2593	-	hypothetical protein
2594	 30.04	0	2972325..2973356	-	343	18311576	-	CPE2594	-	hypothetical protein
2595	 27.27	0	2973480..2974913	-	477	18311577	-	CPE2595	-	potassium/proton antiporter
2596	 29.27	0	2975166..2975534	-	122	18311578	-	CPE2596	-	hypothetical protein
2597	 22.06	-2	2976070..2976468	+	132	18311579	-	CPE2597	-	hypothetical protein
2598	 33.22	+1	2976653..2977543	+	296	18311580	-	CPE2598	-	oxidoreductase
2599	 31.37	0	2977704..2977856	-	50	18311581	-	CPE2599	-	hypothetical protein
2600	 27.50	0	2978227..2978706	-	159	18311582	-	CPE2600	-	SPOUT methyltransferase superfamily protein
2601	 29.84	0	2978953..2979324	-	123	18311583	-	CPE2601	-	hypothetical protein
2602	 29.13	0	2979554..2980195	-	213	18311584	-	CPE2602	-	hypothetical protein
2603	 30.54	0	2980302..2980802	-	166	18311585	-	CPE2603	-	hypothetical protein
2604	 27.57	0	2980945..2981499	-	184	18311586	-	CPE2604	-	hypothetical protein
2605	 30.05	0	2981515..2982306	-	263	18311587	-	CPE2605	-	metallo-beta-lactamase family protein
2606	 34.93	+1	2982329..2983582	-	417	18311588	murA	CPE2606	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2607	 27.11	0	2983922..2984467	+	181	18311589	-	CPE2607	-	hypothetical protein
2608	 23.54	-1	2984662..2985141	+	159	18311590	-	CPE2608	-	hypothetical protein
2609	 32.64	+1	2985197..2985628	+	143	18311591	-	CPE2609	-	hypothetical protein
2610	 29.41	0	2985695..2986891	+	398	18311592	aprX	CPE2610	-	subtilase family protein
2611	 31.15	0	2986894..2987946	-	350	18311593	-	CPE2611	-	peptidase, M23/M37 family
2612	 29.74	0	2988177..2989178	+	333	18311594	dnaD	CPE2612	-	chromosome replication initiation protein
2613	 25.50	-1	2989175..2990170	+	331	18311595	dnaC	CPE2613	-	DNA replication protein DnaC
2614	 24.96	-1	2991273..2991857	-	194	18311596	-	CPE2614	-	hypothetical protein
2615	 30.66	0	2992054..2993250	+	398	18311597	-	CPE2615	-	hypothetical protein
2616	 27.67	0	2993418..2994176	-	252	18311598	-	CPE2616	-	hypothetical protein
2617	 26.99	0	2994199..2994939	-	246	18311599	-	CPE2617	-	acyl-ACP thioesterase family protein
2618	 37.20	+2	2995072..2995614	-	180	18311600	-	CPE2618	-	hypothetical protein
2619	 34.38	+1	2995896..2996087	-	63	18311601	-	CPE2619	-	hypothetical protein
2620	 27.92	0	2996197..2996436	-	79	18311602	-	CPE2620	-	hypothetical protein
2621	 34.00	+1	2996378..2996677	-	99	18311603	-	CPE2621	-	MutT/nudix family protein
2622	 33.80	+1	2996805..2998091	-	428	18311604	purA	CPE2622	-	adenylosuccinate synthetase
2623	 33.19	+1	2998572..2999252	+	226	18311605	sdhB	CPE2623	-	L-serine dehydratase beta subunit
2624	 37.07	+2	2999253..3000134	+	293	18311606	sdhA	CPE2624	-	L-serine dehydratase alpha subunit
2625	 28.73	0	3000370..3001542	+	390	18311607	-	CPE2625	-	tagatose-6-phosphate aldose/ketose isomerase
2626	 34.15	+1	3001562..3002419	+	285	18311608	gatY	CPE2626	-	tagatose-bisphosphate aldolase
2627	 29.06	0	3002476..3003201	-	241	18311609	-	CPE2627	-	GntR family transcriptional regulator
2628	 25.76	0	3003338..3003601	-	87	18311610	-	CPE2628	-	hypothetical protein
2629	 32.84	+1	3003618..3004022	-	134	18311611	-	CPE2629	-	PTS system protein
2630	 32.84	+1	3004195..3005001	-	268	18311612	-	CPE2630	-	mannose permease IIm
2631	 35.96	+1	3005001..3005798	-	265	18311613	-	CPE2631	-	PTS system protein
2632	 32.52	0	3005839..3006327	-	162	18311614	-	CPE2632	-	PTS system protein
2633	 31.34	0	3006605..3007405	-	266	18311615	proC	CPE2633	-	pyrroline-5-carboxylate reductase
2634	 34.46	+1	3007583..3008917	-	444	18311616	dnaC	CPE2634	-	replicative DNA helicase
2635	 32.04	0	3009333..3011192	-	619	18311617	lon	CPE2635	-	ATP-dependent proteinase La
2636	 28.19	0	3011247..3011693	-	148	18311618	rplI	CPE2636	-	50S ribosomal protein L9
2637	 28.13	0	3011695..3013653	-	652	18311619	-	CPE2637	-	DHH family protein
2638	 26.31	0	3013686..3014681	-	331	18311620	-	CPE2638	-	hypothetical protein
2639	 25.16	-1	3014699..3015016	-	105	18311621	-	CPE2639	-	hypothetical protein
2640	 31.69	0	3015299..3015541	-	80	18311622	rpsR	CPE2640	-	30S ribosomal protein S18
2641	 36.20	+2	3015572..3016024	-	150	18311623	-	CPE2641	-	phage-related single-strand DNA-binding protein
2642	 35.05	+1	3016038..3016328	-	96	18311624	rpsF	CPE2642	-	30S ribosomal protein S6
2643	 28.17	0	3016469..3016681	-	70	18311625	-	CPE2643	-	hypothetical protein
2644	 27.53	0	3016718..3017578	-	286	18311626	-	CPE2644	-	mechanosensitive ion channel family protein
2645	 23.50	-1	3017611..3017844	-	77	18311627	-	CPE2645	-	hypothetical protein
2646	 28.86	0	3018004..3018651	+	215	18311628	-	CPE2646	-	hypothetical protein
2647	 30.15	0	3018663..3019823	+	386	18311629	nifS	CPE2647	-	cysteine desulfurase family protein
2648	 20.66	-2	3019835..3020899	+	354	18311630	-	CPE2648	-	sporulation integral membrane protein YtvI
2649	 28.26	0	3020949..3021539	+	196	18311631	-	CPE2649	-	putative sporulation protein YyaC
2650	 25.30	-1	3021690..3022187	-	165	18311632	-	CPE2650	-	hypothetical protein
2651	 27.18	0	3022236..3023096	-	286	18311633	spo0J	CPE2651	-	stage 0 sporulation protein J
2652	 28.68	0	3023097..3023870	-	257	18311634	soj	CPE2652	-	sporulation initiation inhibitor protein soj
2653	 28.61	0	3024120..3024839	-	239	18311635	gidB	CPE2653	-	glucose-inhibited division protein B
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.