IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2519	 32.45	0	2883336..2884358	-	340	18311501	-	CPE2519	-	3D/G5 domain protein
2520	 29.18	0	2884602..2885372	-	256	18311502	-	CPE2520	-	hydrolase, TatD family
2521	 24.73	-1	2885391..2886890	-	499	18311503	-	CPE2521	-	hypothetical protein
2522	 28.63	0	2886992..2887672	+	226	18311504	-	CPE2522	-	cyclic nucleotide-binding domain protein
2523	 27.90	0	2887935..2889479	-	514	18311505	metS	CPE2523	-	methionyl-tRNA synthetase
2524	 31.84	0	2889580..2891517	-	645	18311506	metG	CPE2524	-	methionyl-tRNA synthetase
2525	 28.18	0	2892007..2892588	+	193	18311507	-	CPE2525	-	hypothetical protein
2526	 29.61	0	2892610..2893119	+	169	18311508	-	CPE2526	-	hypothetical protein
2527	 32.23	0	2893448..2895163	-	571	18311509	-	CPE2527	-	hypothetical protein
2528	 29.49	0	2895589..2897202	-	537	18311510	-	CPE2528	-	hypothetical protein
2529	 26.55	0	2897342..2897680	-	112	18311511	-	CPE2529	-	hypothetical protein
2530	 28.19	0	2897788..2899032	-	414	18311512	-	CPE2530	-	xaa-pro aminopeptidase
2531	 35.45	+1	2899180..2901777	-	865	18311513	adhE	CPE2531	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2532	 29.67	0	2902205..2902723	-	172	18311514	spmB	CPE2532	-	spore maturation protein B
2533	 33.16	+1	2902735..2903313	-	192	18311515	spmA	CPE2533	-	spore maturation protein A
2534	 23.89	-1	2903428..2903607	+	59	18311516	-	CPE2534	-	hypothetical protein
2535	 30.41	0	2903647..2905014	-	455	18311517	-	CPE2535	-	MATE efflux family protein
2536	 24.33	-1	2905203..2905835	-	210	18311518	-	CPE2536	-	hypothetical protein
2537	 28.86	0	2905948..2906640	-	230	18311519	-	CPE2537	-	hypothetical protein
2538	 26.90	0	2906644..2907078	-	144	18311520	-	CPE2538	-	hypothetical protein
2539	 29.33	0	2907177..2908175	-	332	18311521	ccpA	CPE2539	-	transcriptional regulator
2540	 27.88	0	2908507..2908836	+	109	18311522	-	CPE2540	-	rhodanese-like domain protein
2541	 33.11	+1	2908882..2912001	-	1039	18311523	ileS	CPE2541	-	isoleucyl-tRNA synthetase
2542	 32.87	+1	2912668..2912883	+	71	18311524	-	CPE2542	-	[2Fe-2S]-binding domain protein
2543	 25.62	-1	2913051..2913659	-	202	18311525	-	CPE2543	-	hypothetical protein
2544	 30.79	0	2913823..2915751	-	642	18311526	-	CPE2544	-	ABC transporter
2545	 28.22	0	2915882..2916487	-	201	18311527	-	CPE2545	-	hypothetical protein
2546	 28.68	0	2916487..2917152	-	221	18311528	-	CPE2546	-	transcriptional regulator
2547	 30.79	0	2917577..2917891	-	104	18311529	-	CPE2547	-	hypothetical protein
2548	 31.46	0	2918053..2919228	+	391	18311530	-	CPE2548	-	putative methyltransferase
2549	 32.47	0	2919593..2919940	-	115	18311531	-	CPE2549	-	hypothetical protein
2550	 31.58	0	2919943..2921196	-	417	18311532	-	CPE2550	-	oxidoreductase, pyridine nucleotide-disulphide family
2551	 32.08	0	2921209..2922639	-	476	18311533	glpA	CPE2551	-	glycerol-3-phosphate dehydrogenase
2552	 33.40	+1	2922805..2924307	-	500	18311534	glpK	CPE2552	-	glycerol kinase
2553	 27.99	0	2924327..2924887	-	186	18311535	glpP	CPE2553	-	glycerol uptake operon antiterminator
2554	 35.31	+1	2924929..2925636	-	235	18311536	glpF	CPE2554	-	glycerol uptake facilitator protein
2555	 28.83	0	2925903..2926346	-	147	18311537	-	CPE2555	-	hypothetical protein
2556	 28.23	0	2926607..2927350	-	247	18311538	-	CPE2556	-	2-phosphosulfolactate phosphatase
2557	 31.94	0	2927377..2928312	-	311	18311539	-	CPE2557	-	radical SAM protein family protein
2558	 28.64	0	2928405..2929490	-	361	18311540	-	CPE2558	-	hypothetical protein
2559	 27.64	0	2929650..2930702	+	350	18311541	-	CPE2559	-	hypothetical protein
2560	 32.35	0	2930754..2932070	-	438	18311542	-	CPE2560	-	spore cortex-lytic enzyme SleC
2561	 31.96	0	2932193..2933941	-	582	18311543	-	CPE2561	-	Ser-type protease
2562	 31.27	0	2933944..2935641	-	565	18311544	-	CPE2562	-	protease CspB
2563	 32.01	0	2935657..2937393	-	578	18311545	-	CPE2563	-	Ser-type protease
2564	 27.98	0	2937534..2938205	-	223	18311546	-	CPE2564	-	hypothetical protein
2565	 29.33	0	2938206..2938580	-	124	18311547	-	CPE2565	-	hypothetical protein
2566	 33.14	+1	2938609..2939121	-	170	18311548	-	CPE2566	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
2567	 25.19	-1	2939362..2939631	-	89	18311549	-	CPE2567	-	hypothetical protein
2568	 30.91	0	2939866..2940648	-	260	18311550	-	CPE2568	-	glutamate racemase
2569	 29.86	0	2940944..2942845	+	633	18311551	-	CPE2569	-	glutamine synthetase
2570	 26.67	0	2942935..2943219	-	94	18311552	-	CPE2570	-	hypothetical protein
2571	 26.32	0	2943457..2944098	-	213	18311553	-	CPE2571	-	hypothetical protein
2572	 32.96	+1	2944713..2947916	-	1067	18311554	carB	CPE2572	-	carbamoyl phosphate synthase large subunit
2573	 32.00	0	2947929..2948978	-	349	18311555	carA	CPE2573	-	carbamoyl phosphate synthase small subunit
2574	 33.64	+1	2949636..2950292	+	218	18311556	-	CPE2574	-	hypothetical protein
2575	 31.64	0	2950548..2952020	-	490	18311557	-	CPE2575	-	[Fe] hydrogenase
2576	 30.74	0	2952091..2952708	-	205	18311558	-	CPE2576	-	3-methyladenine DNA glycosylase
2577	 30.77	0	2953008..2953319	-	103	18311559	-	CPE2577	-	PTS system
2578	 30.93	0	2953420..2954667	-	415	18311560	proA	CPE2578	-	gamma-glutamyl phosphate reductase
2579	 30.62	0	2954670..2955479	-	269	18311561	proB	CPE2579	-	gamma-glutamyl kinase
2580	 33.56	+1	2955566..2956444	-	292	18311562	-	CPE2580	-	oxidoreductase, short chain dehydrogenase/reductase family
2581	 27.78	0	2956508..2957281	-	257	18311563	-	CPE2581	-	oxidoreductase, short-chain dehydrogenase/reductase family
2582	 30.39	0	2957466..2958758	+	430	18311564	-	CPE2582	-	hypothetical protein
2583	 28.07	0	2958849..2959076	+	75	18311565	-	CPE2583	-	hypothetical protein
2584	 32.12	0	2959142..2960785	-	547	161485638	-	CPE2584	-	hydroxylamine reductase
2585	 30.91	0	2961168..2962445	+	425	18311567	-	CPE2585	-	nucleoside recognition domain protein
2586	 27.25	0	2962484..2963272	-	262	18311568	-	CPE2586	-	hypothetical protein
2587	 32.82	+1	2963405..2963989	+	194	18311569	-	CPE2587	-	maltose transacetylase
2588	 28.27	0	2964045..2964518	+	157	18311570	-	CPE2588	-	methionine sulfoxide reductase A
2589	 28.42	0	2964520..2966004	-	494	18311571	-	CPE2589	-	site specific DNA-methyltransferase
2590	 28.84	0	2966133..2968289	-	718	18311572	-	CPE2590	-	phage infection protein
2591	 29.22	0	2968312..2970477	-	721	18311573	-	CPE2591	-	phage infection protein
2592	 32.15	0	2970830..2971168	-	112	18311574	phnA	CPE2592	-	phnA family protein
2593	 27.14	0	2971382..2972188	-	268	18311575	-	CPE2593	-	hypothetical protein
2594	 30.04	0	2972325..2973356	-	343	18311576	-	CPE2594	-	hypothetical protein
2595	 27.27	0	2973480..2974913	-	477	18311577	-	CPE2595	-	potassium/proton antiporter
2596	 29.27	0	2975166..2975534	-	122	18311578	-	CPE2596	-	hypothetical protein
2597	 22.06	-2	2976070..2976468	+	132	18311579	-	CPE2597	-	hypothetical protein
2598	 33.22	+1	2976653..2977543	+	296	18311580	-	CPE2598	-	oxidoreductase
2599	 31.37	0	2977704..2977856	-	50	18311581	-	CPE2599	-	hypothetical protein
2600	 27.50	0	2978227..2978706	-	159	18311582	-	CPE2600	-	SPOUT methyltransferase superfamily protein
2601	 29.84	0	2978953..2979324	-	123	18311583	-	CPE2601	-	hypothetical protein
2602	 29.13	0	2979554..2980195	-	213	18311584	-	CPE2602	-	hypothetical protein
2603	 30.54	0	2980302..2980802	-	166	18311585	-	CPE2603	-	hypothetical protein
2604	 27.57	0	2980945..2981499	-	184	18311586	-	CPE2604	-	hypothetical protein
2605	 30.05	0	2981515..2982306	-	263	18311587	-	CPE2605	-	metallo-beta-lactamase family protein
2606	 34.93	+1	2982329..2983582	-	417	18311588	murA	CPE2606	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2607	 27.11	0	2983922..2984467	+	181	18311589	-	CPE2607	-	hypothetical protein
2608	 23.54	-1	2984662..2985141	+	159	18311590	-	CPE2608	-	hypothetical protein
2609	 32.64	+1	2985197..2985628	+	143	18311591	-	CPE2609	-	hypothetical protein
2610	 29.41	0	2985695..2986891	+	398	18311592	aprX	CPE2610	-	subtilase family protein
2611	 31.15	0	2986894..2987946	-	350	18311593	-	CPE2611	-	peptidase, M23/M37 family
2612	 29.74	0	2988177..2989178	+	333	18311594	dnaD	CPE2612	-	chromosome replication initiation protein
2613	 25.50	-1	2989175..2990170	+	331	18311595	dnaC	CPE2613	-	DNA replication protein DnaC
2614	 24.96	-1	2991273..2991857	-	194	18311596	-	CPE2614	-	hypothetical protein
2615	 30.66	0	2992054..2993250	+	398	18311597	-	CPE2615	-	hypothetical protein
2616	 27.67	0	2993418..2994176	-	252	18311598	-	CPE2616	-	hypothetical protein
2617	 26.99	0	2994199..2994939	-	246	18311599	-	CPE2617	-	acyl-ACP thioesterase family protein
2618	 37.20	+2	2995072..2995614	-	180	18311600	-	CPE2618	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.