IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2418	 33.52	+1	2768161..2768682	-	173	18311400	nusG	CPE2418	-	transcription antitermination protein NusG
2419	 32.00	0	2768720..2768944	-	74	18311401	secE	CPE2419	-	preprotein translocase subunit SecE
2420	 32.00	0	2768998..2769147	-	49	18311402	rpmG	CPE2420	-	50S ribosomal protein L33
2421	 39.70	+2	2769330..2770523	-	397	18311403	tuf	CPE2421	-	elongation factor Tu
2422	 28.09	0	2770748..2771395	-	215	18311404	sigH	CPE2422	-	RNA polymerase factor sigma-70
2423	 29.02	0	2771477..2771986	-	169	18311405	-	CPE2423	-	hypothetical protein
2424	 29.54	0	2772002..2772871	-	289	18311406	-	CPE2424	-	RNA methyltransferase, TrmH family, group 3
2425	 32.38	0	2772894..2773631	-	245	18311407	thyX	CPE2425	-	FAD-dependent thymidylate synthase
2426	 29.44	0	2773647..2774057	-	136	18311408	-	CPE2426	-	hypothetical protein
2427	 30.41	0	2774285..2775685	-	466	18311409	cysS	CPE2427	-	cysteinyl-tRNA synthetase
2428	 32.92	+1	2775790..2777502	-	570	18311410	proS	CPE2428	-	prolyl-tRNA synthetase
2429	 29.35	0	2777857..2778534	-	225	18311411	ispD	CPE2429	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2430	 29.90	0	2778548..2779654	-	368	18311412	-	CPE2430	-	PIN/TRAM domain protein
2431	 31.09	0	2779966..2780367	+	133	18311413	-	CPE2431	-	hypothetical protein
2432	 30.23	0	2780401..2781465	-	354	18311414	-	CPE2432	-	DNA integrity scanning protein DisA
2433	 32.53	0	2781485..2782846	-	453	18311415	radA	CPE2433	-	DNA repair protein RadA
2434	 31.96	0	2783097..2783825	-	242	18311416	nagB	CPE2434	-	glucosamine-6-phosphate deaminase
2435	 30.84	0	2783822..2784544	-	240	18311417	-	CPE2435	-	GntR family transcriptional regulator
2436	 23.64	-1	2784744..2784908	+	54	18311418	-	CPE2436	-	hypothetical protein
2437	 28.51	0	2785002..2785229	+	75	18311419	-	CPE2437	-	glutaredoxin
2438	 31.75	0	2785352..2786800	-	482	18311420	gapN	CPE2438	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenas
2439	 31.62	0	2786817..2787050	-	77	18311421	-	CPE2439	-	glutaredoxin
2440	 32.48	0	2787053..2787991	-	312	18311422	-	CPE2440	-	thioredoxin-disulfide reductase
2441	 30.92	0	2788268..2790712	-	814	18311423	clpC	CPE2441	-	negative regulator of genetic competence MecB/ClpC
2442	 24.56	-1	2790737..2791750	-	337	18311424	-	CPE2442	-	ATP:guanido phosphotransferase
2443	 26.00	0	2791734..2792333	-	199	18311425	-	CPE2443	-	hypothetical protein
2444	 29.39	0	2792281..2792736	-	151	18311426	ctsR	CPE2444	-	transcriptional repressor
2445	 25.84	0	2792953..2793606	+	217	18311427	-	CPE2445	-	hypothetical protein
2446	 27.62	0	2793657..2795318	-	553	18311428	-	CPE2446	-	hypothetical protein
2447	 41.52	+2	2795456..2795626	-	56	18311429	fer	CPE2447	-	ferredoxin
2448	 30.35	0	2795795..2796700	-	301	18311430	-	CPE2448	-	PSP1 domain protein
2449	 26.84	0	2796703..2797626	-	307	18311431	holB	CPE2449	-	DNA polymerase III subunit delta'
2450	 31.52	0	2797648..2797977	-	109	18311432	-	CPE2450	-	hypothetical protein
2451	 26.28	0	2798134..2798289	-	51	18311433	-	CPE2451	-	hypothetical protein
2452	 25.89	0	2798306..2798896	-	196	18311434	gmk	CPE2452	-	guanylate kinase-like protein
2453	 25.09	-1	2799143..2800573	-	476	18311435	-	CPE2453	-	Orn/Lys/Arg decarboxylase
2454	 24.86	-1	2800591..2800767	-	58	18311436	csfB	CPE2454	-	putative csfB protein
2455	 30.60	0	2800923..2802092	+	389	18311437	-	CPE2455	-	amidohydrolase-like protein
2456	 25.70	0	2802121..2802618	-	165	18311438	-	CPE2456	-	hypothetical protein
2457	 27.09	0	2802893..2803837	+	314	18311439	-	CPE2457	-	transport protein
2458	 27.72	0	2803902..2804810	+	302	18311440	-	CPE2458	-	hypothetical protein
2459	 28.83	0	2812125..2813501	-	458	18311441	murD	CPE2459	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2460	 31.80	0	2813812..2814855	+	347	18311442	bioB	CPE2460	-	biotin synthase
2461	 31.88	0	2815098..2816339	-	413	18311443	-	CPE2461	-	putative oxidoreductase
2462	 25.40	-1	2816430..2817299	-	289	18311444	mccF	CPE2462	-	LD-carboxypeptidase family protein
2463	 30.74	0	2817473..2818591	-	372	18311445	pepT	CPE2463	-	peptidase
2464	 34.33	+1	2818777..2820180	-	467	18311446	glyS	CPE2464	-	glycyl-tRNA synthetase
2465	 32.47	0	2820866..2822371	-	501	18311447	lysS	CPE2465	-	lysyl-tRNA synthetase
2466	 31.87	0	2822397..2822873	-	158	18311448	greA	CPE2466	-	transcription elongation factor GreA
2467	 32.93	+1	2823152..2824132	-	326	18311449	-	CPE2467	-	putative dihydrouridine synthase
2468	 30.38	0	2824139..2824918	-	259	18311450	-	CPE2468	-	pantothenate kinase
2469	 31.36	0	2825121..2826791	-	556	18311451	-	CPE2469	-	formate--tetrahydrofolate ligase
2470	 33.94	+1	2826993..2828798	-	601	18311452	ftsH	CPE2470	-	ATP-dependent metalloprotease FtsH
2471	 28.08	0	2828873..2829424	-	183	18311453	hprT	CPE2471	-	hypoxanthine phosphoribosyltransferase
2472	 25.25	-1	2829427..2830836	-	469	18311454	-	CPE2472	-	tRNA(Ile)-lysidine synthetase
2473	 28.23	0	2831053..2833443	-	796	18311455	spoIIE	CPE2473	-	stage II sprulation protein E
2474	 29.88	0	2834751..2835155	-	134	18311456	-	CPE2474	-	hypothetical protein
2475	 29.77	0	2835215..2835607	-	130	18311457	-	CPE2475	-	hypothetical protein
2476	 19.20	-2	2835631..2836005	-	124	18311458	-	CPE2476	-	hypothetical protein
2477	 22.33	-1	2836015..2836314	-	99	18311459	-	CPE2477	-	sporulation protein YabP
2478	 27.97	0	2836445..2836705	-	86	18311460	-	CPE2478	-	S4 domain protein
2479	 33.33	+1	2836813..2837088	-	91	18311461	dbh	CPE2479	-	DNA-binding protein HU
2480	 29.20	0	2837305..2838756	-	483	18311462	-	CPE2480	-	MazG family protein
2481	 29.94	0	2838786..2840318	-	510	18311463	spoVB	CPE2481	-	stage V sporulation protein B
2482	 32.42	0	2840498..2841046	-	182	18311464	-	CPE2482	-	stage V sprulation protein T
2483	 30.13	0	2841241..2842269	-	342	18311465	prsA	CPE2483	-	peptidylprolyl isomerase
2484	 29.81	0	2842370..2845858	-	1162	18311466	mfd	CPE2484	-	transcription-repair coupling factor
2485	 28.40	0	2845907..2846473	-	188	18311467	spoVC	CPE2485	-	peptidyl-tRNA hydrolase
2486	 29.27	0	2846599..2847756	-	385	18311468	-	CPE2486	-	PDZ domain protein
2487	 26.88	0	2847777..2849186	-	469	18311469	-	CPE2487	-	two-component sensor histidine kinase
2488	 32.31	0	2849186..2849872	-	228	18311470	-	CPE2488	-	DNA-binding response regulator
2489	 32.08	0	2850143..2851102	-	319	18311471	prs	CPE2489	-	ribose-phosphate pyrophosphokinase
2490	 30.77	0	2851159..2852523	-	454	18311472	-	CPE2490	-	UDP-N-acetylglucosamine pyrophosphorylase
2491	 30.04	0	2852733..2853005	-	90	18311473	spoVG	CPE2491	-	regulatory protein SpoVG
2492	 28.98	0	2853116..2853919	-	267	18311474	purR	CPE2492	-	purine operon repressor
2493	 30.76	0	2854253..2855653	+	466	161485639	murC	CPE2493	-	UDP-N-acetylmuramate--L-alanine ligase
2494	 27.61	0	2855996..2856904	+	302	18311476	-	CPE2494	-	transcriptional regulator
2495	 33.94	+1	2857020..2857838	+	272	18311477	punA	CPE2495	-	purine nucleoside phosphorylase
2496	 35.62	+1	2857918..2859144	+	408	18311478	-	CPE2496	-	nucleoside transporter
2497	 30.64	0	2859220..2860296	-	358	18311479	-	CPE2497	-	metallopeptidase, family M24
2498	 27.04	0	2860464..2861162	+	232	18311480	-	CPE2498	-	Ser/Thr protein phosphatase family protein
2499	 28.40	0	2861299..2862513	-	404	18311481	-	CPE2499	-	heme/steroid binding domain protein
2500	 33.40	+1	2862925..2864322	+	465	18311482	asnC	CPE2500	-	asparaginyl-tRNA synthetase
2501	 31.17	0	2864622..2866103	-	493	18311483	-	CPE2501	-	leucyl aminopeptidase
2502	 24.28	-1	2866252..2866803	-	183	18311484	-	CPE2502	-	hypothetical protein
2503	 27.45	0	2866933..2867442	-	169	18311485	nrdG	CPE2503	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2504	 27.42	0	2867551..2868159	+	202	18311486	-	CPE2504	-	hypothetical protein
2505	 30.03	0	2868217..2869608	-	463	18311487	-	CPE2505	-	MATE efflux family protein
2506	 29.53	0	2869991..2870989	-	332	18311488	add	CPE2506	-	adenosine deaminase
2507	 31.49	0	2871382..2873499	-	705	18311489	nrdD	CPE2507	-	anaerobic ribonucleoside triphosphate reductase
2508	 29.78	0	2873759..2874826	+	355	18311490	-	CPE2508	-	hypothetical protein
2509	 30.73	0	2875086..2875931	+	281	18311491	-	CPE2509	-	degV family protein
2510	 29.93	0	2875934..2876374	+	146	18311492	-	CPE2510	-	PadR family transcriptional regulator
2511	 35.98	+1	2876426..2876614	-	62	18311493	fer	CPE2511	-	ferredoxin
2512	 33.22	+1	2876762..2877616	-	284	18311494	-	CPE2512	-	Mrp protein
2513	 26.90	0	2877637..2878476	-	279	18311495	-	CPE2513	-	putative lipoprotein
2514	 31.52	0	2878466..2879236	-	256	18311496	-	CPE2514	-	prolipoprotein diacylglyceryl transferase
2515	 27.05	0	2879339..2879911	-	190	18311497	-	CPE2515	-	hypothetical protein
2516	 28.47	0	2880060..2881682	-	540	18311498	-	CPE2516	-	hypothetical protein
2517	 29.25	0	2881782..2882639	-	285	18311499	ksgA	CPE2517	-	dimethyladenosine transferase
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.