IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2369	 34.10	+1	2731995..2732387	-	130	18311351	rpsI	CPE2369	-	30S ribosomal protein S9
2370	 36.32	+2	2732414..2732848	-	144	18311352	rplM	CPE2370	-	50S ribosomal protein L13
2371	 31.02	0	2732995..2733729	-	244	18311353	truA	CPE2371	-	tRNA pseudouridine synthase A
2372	 27.63	0	2733887..2734693	-	268	18311354	-	CPE2372	-	hypothetical protein
2373	 31.00	0	2734709..2735566	-	285	18311355	-	CPE2373	-	cobalt transporter ATP-binding subunit
2374	 32.39	0	2735551..2736396	-	281	18311356	-	CPE2374	-	cobalt transporter ATP-binding subunit
2375	 36.26	+2	2736819..2737160	-	113	18311357	rplQ	CPE2375	-	50S ribosomal protein L17
2376	 31.75	0	2737177..2738124	-	315	18311358	rpoA	CPE2376	-	DNA-directed RNA polymerase subunit alpha
2377	 35.10	+1	2738209..2738829	-	206	18311359	rpsD	CPE2377	-	30S ribosomal protein S4
2378	 39.39	+2	2738853..2739248	-	131	18311360	rpsK	CPE2378	-	30S ribosomal protein S11
2379	 32.51	0	2739265..2739630	-	121	18311361	rpsM	CPE2379	-	30S ribosomal protein S13
2380	 32.46	0	2739867..2739980	-	37	18311362	rpmJ	CPE2380	-	ribosomal protein L36
2381	 31.96	0	2739993..2740211	-	72	18311363	infA	CPE2381	-	translation initiation factor IF-1
2382	 30.10	0	2740219..2740527	-	102	18311364	-	CPE2382	-	hypothetical protein
2383	 35.87	+1	2740586..2741335	-	249	18311365	map	CPE2383	-	methionine aminopeptidase, type I
2384	 33.33	+1	2741335..2741991	-	218	18311366	adk	CPE2384	-	adenylate kinase
2385	 31.53	0	2742012..2743289	-	425	18311367	secY	CPE2385	-	preprotein translocase subunit SecY
2386	 36.96	+2	2743292..2743732	-	146	18311368	rplO	CPE2386	-	50S ribosomal protein L15
2387	 32.76	+1	2743766..2743939	-	57	18311369	rpmD	CPE2387	-	50S ribosomal protein L30
2388	 37.55	+2	2743951..2744448	-	165	18311370	rpsE	CPE2388	-	30S ribosomal protein S5
2389	 36.67	+2	2744469..2744828	-	119	18311371	rplR	CPE2389	-	50S ribosomal protein L18
2390	 36.67	+2	2744859..2745398	-	179	18311372	rplF	CPE2390	-	50S ribosomal protein L6
2391	 35.34	+1	2745495..2745893	-	132	18311373	rpsH	CPE2391	-	30S ribosomal protein S8
2392	 36.56	+2	2745927..2746112	-	61	18311374	rpsN	CPE2392	-	30S ribosomal protein S14
2393	 32.96	+1	2746129..2746668	-	179	18311375	rplE	CPE2393	-	50S ribosomal protein L5
2394	 32.06	0	2746691..2747005	-	104	18311376	rplX	CPE2394	-	50S ribosomal protein L24
2395	 35.77	+1	2747029..2747397	-	122	18311377	rplN	CPE2395	-	50S ribosomal protein L14
2396	 33.33	+1	2747428..2747682	-	84	18311378	rpsQ	CPE2396	-	30S ribosomal protein S17
2397	 30.00	0	2747704..2747913	-	69	18311379	rpmC	CPE2397	-	ribosomal protein L29
2398	 38.39	+2	2747913..2748347	-	144	18311380	rplP	CPE2398	-	50S ribosomal protein L16
2399	 35.13	+1	2748378..2749046	-	222	18311381	rpsC	CPE2399	-	30S ribosomal protein S3
2400	 34.82	+1	2749067..2749402	-	111	18311382	rplV	CPE2400	-	50S ribosomal protein L22
2401	 31.91	0	2749430..2749711	-	93	18311383	rpsS	CPE2401	-	30S ribosomal protein S19
2402	 38.97	+2	2749782..2750615	-	277	18311384	rplB	CPE2402	-	50S ribosomal protein L2
2403	 35.37	+1	2750670..2750963	-	97	18311385	rplW	CPE2403	-	50S ribosomal protein L23
2404	 35.80	+1	2751051..2751578	-	175	18311386	rplD	CPE2404	-	50S ribosomal protein L4
2405	 36.83	+2	2751603..2752232	-	209	161485641	rplC	CPE2405	-	50S ribosomal protein L3
2406	 32.36	0	2752315..2752623	-	102	18311388	rpsJ	CPE2406	-	30S ribosomal protein S10
2407	 39.45	+2	2753318..2754511	-	397	18311389	tuf	CPE2407	-	elongation factor Tu
2408	 37.40	+2	2754585..2756651	-	688	18311390	fus	CPE2408	-	elongation factor G
2409	 35.46	+1	2756732..2757202	-	156	18311391	rpsG	CPE2409	-	30S ribosomal protein S7
2410	 38.32	+2	2757362..2757742	-	126	18311392	rpsL	CPE2410	-	30S ribosomal protein S12
2411	 31.09	0	2757800..2758066	-	88	18311393	-	CPE2411	-	ribosomal protein L7AE family protein
2412	 34.38	+1	2758152..2761688	-	1178	18311394	rpoC	CPE2412	-	DNA-directed RNA polymerase subunit beta'
2413	 34.98	+1	2761768..2765472	-	1234	18311395	rpoB	CPE2413	-	DNA-directed RNA polymerase subunit beta
2414	 36.89	+2	2765777..2766142	-	121	18311396	rplL	CPE2414	-	ribosomal protein L7/L12
2415	 34.93	+1	2766197..2766697	-	166	161485640	rplJ	CPE2415	-	50S ribosomal protein L10
2416	 36.09	+2	2766914..2767603	-	229	18311398	rplA	CPE2416	-	50S ribosomal protein L1
2417	 37.09	+2	2767661..2768086	-	141	18311399	rplK	CPE2417	-	50S ribosomal protein L11
2418	 33.52	+1	2768161..2768682	-	173	18311400	nusG	CPE2418	-	transcription antitermination protein NusG
2419	 32.00	0	2768720..2768944	-	74	18311401	secE	CPE2419	-	preprotein translocase subunit SecE
2420	 32.00	0	2768998..2769147	-	49	18311402	rpmG	CPE2420	-	50S ribosomal protein L33
2421	 39.70	+2	2769330..2770523	-	397	18311403	tuf	CPE2421	-	elongation factor Tu
2422	 28.09	0	2770748..2771395	-	215	18311404	sigH	CPE2422	-	RNA polymerase factor sigma-70
2423	 29.02	0	2771477..2771986	-	169	18311405	-	CPE2423	-	hypothetical protein
2424	 29.54	0	2772002..2772871	-	289	18311406	-	CPE2424	-	RNA methyltransferase, TrmH family, group 3
2425	 32.38	0	2772894..2773631	-	245	18311407	thyX	CPE2425	-	FAD-dependent thymidylate synthase
2426	 29.44	0	2773647..2774057	-	136	18311408	-	CPE2426	-	hypothetical protein
2427	 30.41	0	2774285..2775685	-	466	18311409	cysS	CPE2427	-	cysteinyl-tRNA synthetase
2428	 32.92	+1	2775790..2777502	-	570	18311410	proS	CPE2428	-	prolyl-tRNA synthetase
2429	 29.35	0	2777857..2778534	-	225	18311411	ispD	CPE2429	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2430	 29.90	0	2778548..2779654	-	368	18311412	-	CPE2430	-	PIN/TRAM domain protein
2431	 31.09	0	2779966..2780367	+	133	18311413	-	CPE2431	-	hypothetical protein
2432	 30.23	0	2780401..2781465	-	354	18311414	-	CPE2432	-	DNA integrity scanning protein DisA
2433	 32.53	0	2781485..2782846	-	453	18311415	radA	CPE2433	-	DNA repair protein RadA
2434	 31.96	0	2783097..2783825	-	242	18311416	nagB	CPE2434	-	glucosamine-6-phosphate deaminase
2435	 30.84	0	2783822..2784544	-	240	18311417	-	CPE2435	-	GntR family transcriptional regulator
2436	 23.64	-1	2784744..2784908	+	54	18311418	-	CPE2436	-	hypothetical protein
2437	 28.51	0	2785002..2785229	+	75	18311419	-	CPE2437	-	glutaredoxin
2438	 31.75	0	2785352..2786800	-	482	18311420	gapN	CPE2438	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenas
2439	 31.62	0	2786817..2787050	-	77	18311421	-	CPE2439	-	glutaredoxin
2440	 32.48	0	2787053..2787991	-	312	18311422	-	CPE2440	-	thioredoxin-disulfide reductase
2441	 30.92	0	2788268..2790712	-	814	18311423	clpC	CPE2441	-	negative regulator of genetic competence MecB/ClpC
2442	 24.56	-1	2790737..2791750	-	337	18311424	-	CPE2442	-	ATP:guanido phosphotransferase
2443	 26.00	0	2791734..2792333	-	199	18311425	-	CPE2443	-	hypothetical protein
2444	 29.39	0	2792281..2792736	-	151	18311426	ctsR	CPE2444	-	transcriptional repressor
2445	 25.84	0	2792953..2793606	+	217	18311427	-	CPE2445	-	hypothetical protein
2446	 27.62	0	2793657..2795318	-	553	18311428	-	CPE2446	-	hypothetical protein
2447	 41.52	+2	2795456..2795626	-	56	18311429	fer	CPE2447	-	ferredoxin
2448	 30.35	0	2795795..2796700	-	301	18311430	-	CPE2448	-	PSP1 domain protein
2449	 26.84	0	2796703..2797626	-	307	18311431	holB	CPE2449	-	DNA polymerase III subunit delta'
2450	 31.52	0	2797648..2797977	-	109	18311432	-	CPE2450	-	hypothetical protein
2451	 26.28	0	2798134..2798289	-	51	18311433	-	CPE2451	-	hypothetical protein
2452	 25.89	0	2798306..2798896	-	196	18311434	gmk	CPE2452	-	guanylate kinase-like protein
2453	 25.09	-1	2799143..2800573	-	476	18311435	-	CPE2453	-	Orn/Lys/Arg decarboxylase
2454	 24.86	-1	2800591..2800767	-	58	18311436	csfB	CPE2454	-	putative csfB protein
2455	 30.60	0	2800923..2802092	+	389	18311437	-	CPE2455	-	amidohydrolase-like protein
2456	 25.70	0	2802121..2802618	-	165	18311438	-	CPE2456	-	hypothetical protein
2457	 27.09	0	2802893..2803837	+	314	18311439	-	CPE2457	-	transport protein
2458	 27.72	0	2803902..2804810	+	302	18311440	-	CPE2458	-	hypothetical protein
2459	 28.83	0	2812125..2813501	-	458	18311441	murD	CPE2459	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2460	 31.80	0	2813812..2814855	+	347	18311442	bioB	CPE2460	-	biotin synthase
2461	 31.88	0	2815098..2816339	-	413	18311443	-	CPE2461	-	putative oxidoreductase
2462	 25.40	-1	2816430..2817299	-	289	18311444	mccF	CPE2462	-	LD-carboxypeptidase family protein
2463	 30.74	0	2817473..2818591	-	372	18311445	pepT	CPE2463	-	peptidase
2464	 34.33	+1	2818777..2820180	-	467	18311446	glyS	CPE2464	-	glycyl-tRNA synthetase
2465	 32.47	0	2820866..2822371	-	501	18311447	lysS	CPE2465	-	lysyl-tRNA synthetase
2466	 31.87	0	2822397..2822873	-	158	18311448	greA	CPE2466	-	transcription elongation factor GreA
2467	 32.93	+1	2823152..2824132	-	326	18311449	-	CPE2467	-	putative dihydrouridine synthase
2468	 30.38	0	2824139..2824918	-	259	18311450	-	CPE2468	-	pantothenate kinase
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.