IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2303	 30.74	0	2647890..2650088	-	732	18311285	-	CPE2303	-	heavy metal-transporting ATPase
2304	 28.89	0	2650104..2650463	-	119	18311286	-	CPE2304	-	transcriptional regulator
2305	 28.50	0	2650598..2651218	-	206	18311287	-	CPE2305	-	hypothetical protein
2306	 26.77	0	2651306..2651884	-	192	18311288	-	CPE2306	-	hypothetical protein
2307	 25.06	-1	2652430..2652840	-	136	18311289	-	CPE2307	-	hypothetical protein
2308	 31.75	0	2653069..2654139	-	356	18311290	-	CPE2308	-	mannose-1-phosphate guanylyltransferase
2309	 31.67	0	2654377..2655756	-	459	18311291	-	CPE2309	-	beta-glucosidase
2310	 28.18	0	2656453..2657829	-	458	18311292	aldH	CPE2310	-	aldehyde dehydrogenase
2311	 25.74	0	2657979..2658689	-	236	18311293	-	CPE2311	-	hypothetical protein
2312	 27.39	0	2658798..2659739	+	313	18311294	-	CPE2312	-	hypothetical protein
2313	 27.92	0	2659981..2660886	-	301	18311295	-	CPE2313	-	hypothetical protein
2314	 24.56	-1	2660908..2661921	-	337	18311296	-	CPE2314	-	hypothetical protein
2315	 31.71	0	2661982..2662659	-	225	18311297	-	CPE2315	-	sortase family protein
2316	 30.79	0	2663009..2663479	+	156	18311298	ispF	CPE2316	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2317	 30.52	0	2663655..2664968	-	437	18311299	-	CPE2317	-	Na+/H+ antiporter
2318	 28.94	0	2665305..2666147	-	280	18311300	-	CPE2318	-	pyridoxamine kinase
2319	 27.13	0	2666820..2667512	-	230	18311301	-	CPE2319	-	hypothetical protein
2320	 26.42	0	2667702..2668106	+	134	18311302	-	CPE2320	-	hypothetical protein
2321	 25.67	0	2668165..2669574	-	469	18311303	-	CPE2321	-	hypothetical protein
2322	 33.07	+1	2670843..2672774	+	643	18311304	thrS	CPE2322	-	threonyl-tRNA synthetase
2323	 29.85	0	2673241..2674935	-	564	18311305	-	CPE2323	-	oligoendopeptidase, M3 family
2324	 26.94	0	2675031..2675609	-	192	18311306	-	CPE2324	-	5-formyltetrahydrofolate cyclo-ligase family protein
2325	 31.24	0	2675835..2676647	-	270	18311307	-	CPE2325	-	hypothetical protein
2326	 29.24	0	2676861..2677031	-	56	18311308	-	CPE2326	-	hypothetical protein
2327	 31.70	0	2677051..2678883	-	610	18311309	glmS	CPE2327	-	D-fructose-6-phosphate amidotransferase
2328	 28.76	0	2679676..2680200	+	174	18311310	-	CPE2328	-	hypothetical protein
2329	 32.59	0	2680350..2681696	-	448	18311311	-	CPE2329	-	phosphoglucosamine mutase
2330	 28.15	0	2682169..2683461	+	430	18311312	-	CPE2330	-	hypothetical protein
2331	 26.85	0	2683722..2685125	-	467	18311313	-	CPE2331	-	two-component sensor histidine kinase
2332	 29.15	0	2685106..2685798	-	230	18311314	-	CPE2332	-	two-component response regulator
2333	 35.53	+1	2685968..2686285	-	105	18311315	-	CPE2333	-	hypothetical protein
2334	 28.00	0	2686351..2686650	-	99	18311316	-	CPE2334	-	TrpR-like protein YerC/YecD
2335	 32.14	0	2686790..2687629	-	279	18311317	-	CPE2335	-	hypothetical protein
2336	 29.02	0	2687746..2689764	-	672	18311318	gde	CPE2336	-	glycogen debranching protein
2337	 29.57	0	2690107..2692470	-	787	18311319	glgP	CPE2337	-	glycogen phosphorylase
2338	 31.06	0	2692463..2693956	-	497	18311320	malQ	CPE2338	-	4-alpha-glucanotransferase
2339	 28.91	0	2693978..2696125	-	715	18311321	-	CPE2339	-	alpha-glucosidase
2340	 29.09	0	2696149..2697162	-	337	18311322	malR	CPE2340	-	LacI family transcriptional regulator
2341	 31.66	0	2697457..2698350	-	297	18311323	-	CPE2341	-	maltose ABC transporter
2342	 30.40	0	2698352..2699305	-	317	18311324	-	CPE2342	-	maltose ABC transporter
2343	 33.25	+1	2699392..2700618	-	408	18311325	-	CPE2343	-	maltose ABC transporter
2344	 24.63	-1	2701079..2702020	-	313	18311326	-	CPE2344	-	hypothetical protein
2345	 31.44	0	2702055..2703164	-	369	18311327	-	CPE2345	-	maltose ABC transportor
2346	 33.51	+1	2703382..2705100	-	572	18311328	hydA	CPE2346	-	iron hydrogenase
2347	 32.68	+1	2705326..2706396	-	356	18311329	buk	CPE2347	-	butyrate kinase
2348	 31.52	0	2706421..2707410	-	329	18311330	ptb	CPE2348	-	phosphate butyryltransferase
2349	 31.65	0	2707512..2709113	-	533	18311331	-	CPE2349	-	hypothetical protein
2350	 29.95	0	2709189..2710517	-	442	18311332	-	CPE2350	-	hypothetical protein
2351	 28.09	0	2710484..2711341	-	285	18311333	-	CPE2351	-	hypothetical protein
2352	 23.57	-1	2711502..2712464	+	320	18311334	-	CPE2352	-	hypothetical protein
2353	 32.01	0	2712535..2713137	+	200	18311335	-	CPE2353	-	spore cortex-lytic enzyme
2354	 32.17	0	2713169..2714029	-	286	18311336	trxR	CPE2354	-	thioredoxin reductase
2355	 30.79	0	2714056..2714370	-	104	18311337	-	CPE2355	-	thioredoxin
2356	 31.62	0	2714487..2715656	-	389	18311338	-	CPE2356	-	isoaspartyl dipeptidase
2357	 33.83	+1	2715821..2717440	-	539	18311339	-	CPE2357	-	phosphoenolpyruvate-protein phosphotransferase
2358	 28.60	0	2717915..2719921	+	668	18311340	-	CPE2358	-	sigma-L-dependent transcriptional regulator
2359	 31.82	0	2720091..2720684	-	197	18311341	rpsD	CPE2359	-	30S ribosomal protein S4
2360	 28.79	0	2721085..2722119	-	344	18311342	nrdF	CPE2360	-	ribonucleotide-diphosphate reductase subunit beta
2361	 31.45	0	2722215..2724446	-	743	18311343	nrdA	CPE2361	-	ribonucleotide-diphosphate reductase subunit alpha
2362	 27.73	0	2724730..2725086	-	118	18311344	-	CPE2362	-	ArsC family protein
2363	 25.40	-1	2725258..2727084	-	608	18311345	-	CPE2363	-	two-component sensor histidine kinase
2364	 28.04	0	2727062..2727760	-	232	18311346	-	CPE2364	-	DNA-binding response regulator
2365	 28.09	0	2728014..2728871	+	285	18311347	-	CPE2365	-	hypothetical protein
2366	 18.30	-2	2728973..2729125	+	50	18311348	-	CPE2366	-	hypothetical protein
2367	 30.21	0	2729132..2729803	-	223	18311349	-	CPE2367	-	N-acetylmuramoyl-L-alanine amidase
2368	 30.67	0	2729994..2731607	-	537	18311350	-	CPE2368	-	hypothetical protein
2369	 34.10	+1	2731995..2732387	-	130	18311351	rpsI	CPE2369	-	30S ribosomal protein S9
2370	 36.32	+2	2732414..2732848	-	144	18311352	rplM	CPE2370	-	50S ribosomal protein L13
2371	 31.02	0	2732995..2733729	-	244	18311353	truA	CPE2371	-	tRNA pseudouridine synthase A
2372	 27.63	0	2733887..2734693	-	268	18311354	-	CPE2372	-	hypothetical protein
2373	 31.00	0	2734709..2735566	-	285	18311355	-	CPE2373	-	cobalt transporter ATP-binding subunit
2374	 32.39	0	2735551..2736396	-	281	18311356	-	CPE2374	-	cobalt transporter ATP-binding subunit
2375	 36.26	+2	2736819..2737160	-	113	18311357	rplQ	CPE2375	-	50S ribosomal protein L17
2376	 31.75	0	2737177..2738124	-	315	18311358	rpoA	CPE2376	-	DNA-directed RNA polymerase subunit alpha
2377	 35.10	+1	2738209..2738829	-	206	18311359	rpsD	CPE2377	-	30S ribosomal protein S4
2378	 39.39	+2	2738853..2739248	-	131	18311360	rpsK	CPE2378	-	30S ribosomal protein S11
2379	 32.51	0	2739265..2739630	-	121	18311361	rpsM	CPE2379	-	30S ribosomal protein S13
2380	 32.46	0	2739867..2739980	-	37	18311362	rpmJ	CPE2380	-	ribosomal protein L36
2381	 31.96	0	2739993..2740211	-	72	18311363	infA	CPE2381	-	translation initiation factor IF-1
2382	 30.10	0	2740219..2740527	-	102	18311364	-	CPE2382	-	hypothetical protein
2383	 35.87	+1	2740586..2741335	-	249	18311365	map	CPE2383	-	methionine aminopeptidase, type I
2384	 33.33	+1	2741335..2741991	-	218	18311366	adk	CPE2384	-	adenylate kinase
2385	 31.53	0	2742012..2743289	-	425	18311367	secY	CPE2385	-	preprotein translocase subunit SecY
2386	 36.96	+2	2743292..2743732	-	146	18311368	rplO	CPE2386	-	50S ribosomal protein L15
2387	 32.76	+1	2743766..2743939	-	57	18311369	rpmD	CPE2387	-	50S ribosomal protein L30
2388	 37.55	+2	2743951..2744448	-	165	18311370	rpsE	CPE2388	-	30S ribosomal protein S5
2389	 36.67	+2	2744469..2744828	-	119	18311371	rplR	CPE2389	-	50S ribosomal protein L18
2390	 36.67	+2	2744859..2745398	-	179	18311372	rplF	CPE2390	-	50S ribosomal protein L6
2391	 35.34	+1	2745495..2745893	-	132	18311373	rpsH	CPE2391	-	30S ribosomal protein S8
2392	 36.56	+2	2745927..2746112	-	61	18311374	rpsN	CPE2392	-	30S ribosomal protein S14
2393	 32.96	+1	2746129..2746668	-	179	18311375	rplE	CPE2393	-	50S ribosomal protein L5
2394	 32.06	0	2746691..2747005	-	104	18311376	rplX	CPE2394	-	50S ribosomal protein L24
2395	 35.77	+1	2747029..2747397	-	122	18311377	rplN	CPE2395	-	50S ribosomal protein L14
2396	 33.33	+1	2747428..2747682	-	84	18311378	rpsQ	CPE2396	-	30S ribosomal protein S17
2397	 30.00	0	2747704..2747913	-	69	18311379	rpmC	CPE2397	-	ribosomal protein L29
2398	 38.39	+2	2747913..2748347	-	144	18311380	rplP	CPE2398	-	50S ribosomal protein L16
2399	 35.13	+1	2748378..2749046	-	222	18311381	rpsC	CPE2399	-	30S ribosomal protein S3
2400	 34.82	+1	2749067..2749402	-	111	18311382	rplV	CPE2400	-	50S ribosomal protein L22
2401	 31.91	0	2749430..2749711	-	93	18311383	rpsS	CPE2401	-	30S ribosomal protein S19
2402	 38.97	+2	2749782..2750615	-	277	18311384	rplB	CPE2402	-	50S ribosomal protein L2
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.