IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2208	 33.83	+1	2527964..2529571	-	535	18311190	ctrA	CPE2208	-	CTP synthetase
2209	 29.05	0	2529911..2530330	-	139	18311191	-	CPE2209	-	hypothetical protein
2210	 30.07	0	2530353..2531333	-	326	18311192	-	CPE2210	-	hypothetical protein
2211	 26.51	0	2531379..2532008	-	209	18311193	spoIIR	CPE2211	-	stage II sporulation protein R
2212	 27.22	0	2532078..2532944	-	288	18311194	ipk	CPE2212	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2213	 29.56	0	2533080..2535704	-	874	18311195	cphA	CPE2213	-	cyanophycin synthetase
2214	 30.07	0	2535691..2536518	-	275	18311196	cphB	CPE2214	-	cyanophycinase
2215	 28.85	0	2536618..2538180	-	520	18311197	-	CPE2215	-	lysM domain protein
2216	 33.33	+1	2538540..2538776	-	78	18311198	-	CPE2216	-	hypothetical protein
2217	 28.49	0	2538939..2539826	-	295	18311199	-	CPE2217	-	peptidase family protein
2218	 27.56	0	2540029..2541033	-	334	18311200	cotS	CPE2218	-	spore coat protein CotS
2219	 27.57	0	2541142..2542269	+	375	18311201	-	CPE2219	-	mannosyltransferase B
2220	 22.84	-1	2542452..2543480	-	342	18311202	cotS	CPE2220	-	spore coat protein
2221	 24.27	-1	2543496..2544179	-	227	18311203	-	CPE2221	-	hypothetical protein
2222	 27.88	0	2544187..2545194	-	335	18311204	cotS	CPE2222	-	spore coat protein
2223	 29.06	0	2545323..2546468	+	381	18311205	-	CPE2223	-	mannosyltransferase B
2224	 27.68	0	2546702..2547232	-	176	18311206	-	CPE2224	-	hypothetical protein
2225	 26.61	0	2547425..2547796	-	123	18311207	-	CPE2225	-	hypothetical protein
2226	 30.63	0	2547937..2548380	+	147	18311208	-	CPE2226	-	hypothetical protein
2227	 27.50	0	2548415..2549443	+	342	18311209	apbA	CPE2227	-	thiamin biosynthesis lipoprotein
2228	 29.33	0	2549567..2550691	-	374	18311210	eutH	CPE2228	-	ethanolamine transporter
2229	 26.36	0	2550854..2551183	-	109	18311211	-	CPE2229	-	PTS system protein
2230	 30.65	0	2551428..2552807	-	459	18311212	-	CPE2230	-	serine protease
2231	 26.96	0	2552924..2553943	-	339	18311213	-	CPE2231	-	hydrolase, alpha/beta fold family
2232	 34.12	+1	2553958..2554977	-	339	18311214	-	CPE2232	-	O-sialoglycoprotein endopeptidase
2233	 26.38	0	2555119..2555751	+	210	18311215	-	CPE2233	-	hypothetical protein
2234	 24.78	-1	2555760..2556320	+	186	18311216	-	CPE2234	-	acyl-CoA thioesterase I
2235	 31.15	0	2556457..2557419	-	320	18311217	-	CPE2235	-	oxidoreductase, pyridine nucleotide-disulphide family
2236	 28.10	0	2557451..2558023	-	190	18311218	-	CPE2236	-	hypothetical protein
2237	 27.04	0	2558205..2560094	+	629	18311219	-	CPE2237	-	hypothetical protein
2238	 27.49	0	2560233..2561756	-	507	18311220	-	CPE2238	-	putative lipoprotein
2239	 26.98	0	2561773..2563188	-	471	18311221	-	CPE2239	-	two-component sensor histidine kinase
2240	 28.63	0	2563369..2563836	-	155	18311222	-	CPE2240	-	two-component response regulator
2241	 28.76	0	2563901..2564053	-	50	18311223	-	CPE2241	-	hypothetical protein
2242	 30.59	0	2569898..2570698	-	266	18311224	-	CPE2242	-	hypothetical protein
2243	 27.49	0	2570886..2571689	-	267	18311225	smtA	CPE2243	-	S-adenosylmethionine-dependent methltransferase
2244	 24.74	-1	2571905..2572660	+	251	18311226	-	CPE2244	-	hypothetical protein
2245	 26.73	0	2572779..2573081	+	100	18311227	-	CPE2245	-	hypothetical protein
2246	 29.22	0	2573156..2573617	-	153	18311228	-	CPE2246	-	hypothetical protein
2247	 24.91	-1	2573650..2574219	-	189	18311229	-	CPE2247	-	hypothetical protein
2248	 28.25	0	2579928..2580497	-	189	18311230	-	CPE2248	-	chromate transporter
2249	 27.17	0	2580484..2581035	-	183	18311231	-	CPE2249	-	chromate transporter
2250	 24.11	-1	2581458..2582162	+	234	18311232	-	CPE2250	-	hypothetical protein
2251	 30.65	0	2582494..2583945	-	483	18311233	pepD	CPE2251	-	aminoacyl-histidine dipeptidase
2252	 29.30	0	2586002..2586472	-	156	18311234	-	CPE2252	-	Ser/Thr protein phosphatase family protein
2253	 27.64	0	2586484..2587098	-	204	18311235	-	CPE2253	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2254	 33.60	+1	2587100..2587846	-	248	18311236	rnpH	CPE2254	-	ribonuclease PH
2255	 25.29	-1	2588068..2589771	+	567	18311237	-	CPE2255	-	hypothetical protein
2256	 26.30	0	2589975..2591495	-	506	18311238	-	CPE2256	-	oligopeptide-binding protein
2257	 23.87	-1	2593111..2593575	-	154	18311239	-	CPE2257	-	hypothetical protein
2258	 24.38	-1	2593699..2594022	+	107	18311240	-	CPE2258	-	hypothetical protein
2259	 30.53	0	2594060..2596057	-	665	18311241	ligA	CPE2259	-	NAD-dependent DNA ligase LigA
2260	 29.61	0	2596086..2598341	-	751	18311242	-	CPE2260	-	ATP-dependent DNA helicase PcrA
2261	 27.12	0	2598553..2599341	-	262	18311243	-	CPE2261	-	hypothetical protein
2262	 27.87	0	2599358..2599906	-	182	18311244	-	CPE2262	-	hypothetical protein
2263	 27.23	0	2599908..2600579	-	223	18311245	-	CPE2263	-	hypothetical protein
2264	 29.58	0	2601132..2601851	-	239	18311246	-	CPE2264	-	16S pseudouridylate synthase
2265	 27.12	0	2602225..2604285	-	686	18311247	-	CPE2265	-	two component regulator three Y motif protein
2266	 29.33	0	2604658..2605107	-	149	18311248	-	CPE2266	-	hypothetical protein
2267	 33.63	+1	2605305..2606657	-	450	18311249	pgi	CPE2267	-	glucose-6-phosphate isomerase
2268	 26.19	0	2606687..2606896	-	69	18311250	-	CPE2268	-	hypothetical protein
2269	 31.79	0	2607098..2608066	-	322	18311251	appF	CPE2269	-	oligopeptide ABC transporter
2270	 33.33	+1	2608067..2609044	-	325	18311252	appD	CPE2270	-	oligopeptide ABC transporter
2271	 32.02	0	2609058..2609972	-	304	18311253	appC	CPE2271	-	oligopeptide ABC transporter
2272	 31.68	0	2609987..2610952	-	321	18311254	appB	CPE2272	-	oligopeptide ABC transporter
2273	 32.53	0	2611027..2612766	-	579	18311255	appA	CPE2273	-	oligopeptide ABC transporter
2274	 33.72	+1	2613396..2614688	+	430	18311256	narK	CPE2274	-	nitrate extrusion protein
2275	 34.58	+1	2615047..2616576	-	509	18311257	guaA	CPE2275	-	bifunctional GMP synthase/glutamine amidotransferase protein
2276	 33.75	+1	2616682..2618136	-	484	18311258	-	CPE2276	-	inositol-5-monophosphate dehydrogenase
2277	 27.50	0	2618846..2621467	-	873	18311259	-	CPE2277	-	hypothetical protein
2278	 23.53	-1	2621491..2622051	-	186	18311260	-	CPE2278	-	hypothetical protein
2279	 25.04	-1	2622077..2624185	-	702	18311261	-	CPE2279	-	hypothetical protein
2280	 24.35	-1	2624190..2625191	-	333	18311262	-	CPE2280	-	hypothetical protein
2281	 27.09	0	2625212..2626429	-	405	18311263	-	CPE2281	-	hypothetical protein
2282	 26.81	0	2626419..2626985	-	188	18311264	-	CPE2282	-	hypothetical protein
2283	 27.45	0	2627000..2628154	-	384	18311265	-	CPE2283	-	type IV pilus assembly protein PilM
2284	 31.51	0	2628270..2628818	-	182	18311266	-	CPE2284	-	hypothetical protein
2285	 30.18	0	2628890..2630095	-	401	18311267	-	CPE2285	-	type II secretion system protein F
2286	 30.56	0	2630122..2631813	-	563	18311268	-	CPE2286	-	secretion system protein E
2287	 26.61	0	2631883..2632626	-	247	18311269	-	CPE2287	-	prepilin peptidase
2288	 30.02	0	2632902..2633324	-	140	18311270	-	CPE2288	-	prepilin peptidase dependent protein A
2289	 33.70	+1	2633990..2635609	-	539	18311271	groEL	CPE2289	-	chaperonin GroEL
2290	 35.79	+1	2635664..2635948	-	94	18311272	groES	CPE2290	-	co-chaperonin GroES
2291	 19.66	-2	2636319..2636969	+	216	18311273	-	CPE2291	-	hypothetical protein
2292	 30.77	0	2637112..2637423	+	103	18311274	-	CPE2292	-	hypothetical protein
2293	 29.93	0	2637545..2638483	-	312	18311275	-	CPE2293	-	8-oxoguanine DNA glycosylase
2294	 33.58	+1	2638493..2638897	-	134	18311276	-	CPE2294	-	hypothetical protein
2295	 26.75	0	2639141..2639641	-	166	18311277	lepW	CPE2295	-	signal peptidase type I
2296	 28.16	0	2639783..2641483	-	566	18311278	-	CPE2296	-	ABC transporter
2297	 33.22	+1	2641742..2642590	-	282	18311279	-	CPE2297	-	3-hydroxybutyryl-CoA dehydrogenase
2298	 33.04	+1	2642704..2643711	-	335	18311280	fixB	CPE2298	-	3-hydroxybutyryl-CoA dehydrogenase
2299	 32.56	0	2643733..2644512	-	259	18311281	etfB	CPE2299	-	electron transfer flavoprotein beta subunit
2300	 34.47	+1	2644531..2645670	-	379	18311282	bcd	CPE2300	-	butyryl-CoA dehydrogenase
2301	 32.69	+1	2645717..2646499	-	260	18311283	crt	CPE2301	-	3-hydroxybutyryl-CoA dehydratase
2302	 30.20	0	2646762..2647400	-	212	18311284	-	CPE2302	-	redox-sensing transcriptional repressor Rex
2303	 30.74	0	2647890..2650088	-	732	18311285	-	CPE2303	-	heavy metal-transporting ATPase
2304	 28.89	0	2650104..2650463	-	119	18311286	-	CPE2304	-	transcriptional regulator
2305	 28.50	0	2650598..2651218	-	206	18311287	-	CPE2305	-	hypothetical protein
2306	 26.77	0	2651306..2651884	-	192	18311288	-	CPE2306	-	hypothetical protein
2307	 25.06	-1	2652430..2652840	-	136	18311289	-	CPE2307	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.