IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2169	 28.27	0	2486599..2487942	+	447	18311151	-	CPE2169	-	peptidase family protein
2170	 32.61	+1	2488191..2489162	-	323	18311152	prfB	CPE2170	-	peptide chain release factor 2
2171	 32.18	0	2489545..2492067	-	840	18311153	secA	CPE2171	-	preprotein translocase subunit SecA
2172	 28.52	0	2492302..2492841	-	179	18311154	-	CPE2172	-	30S ribosomal protein S30AE
2173	 25.00	-1	2493292..2493951	-	219	18311155	comFC	CPE2173	-	comFC protein
2174	 23.05	-1	2493927..2494889	-	320	18311156	-	CPE2174	-	hypothetical protein
2175	 29.53	0	2494907..2497141	-	744	18311157	recD	CPE2175	-	helicase, RecD/TraA family
2176	 31.93	0	2497278..2498414	+	378	18311158	nagA	CPE2176	-	N-acetylglucosamine-6-phosphate deacetylase
2177	 34.95	+1	2498554..2499729	-	391	161485642	metK	CPE2177	-	S-adenosylmethionine synthetase
2178	 23.88	-1	2500946..2501590	-	214	18311160	-	CPE2178	-	hypothetical protein
2179	 27.68	0	2501696..2502226	+	176	18311161	-	CPE2179	-	putative sporulation protein YyaC
2180	 35.36	+1	2502265..2503302	-	345	18311162	mreV	CPE2180	-	cell shape determining protein
2181	 28.17	0	2503393..2503644	-	83	18311163	spoIIID	CPE2181	-	stage III sporulation protein D
2182	 31.52	0	2503719..2504489	-	256	18311164	-	CPE2182	-	hypothetical protein
2183	 27.76	0	2504606..2505628	-	340	18311165	spoIID	CPE2183	-	stage II sporulation protein D
2184	 31.20	0	2505740..2507005	-	421	18311166	murA	CPE2184	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2185	 22.02	-2	2507028..2507672	-	214	18311167	-	CPE2185	-	hypothetical protein
2186	 32.09	0	2507854..2508255	-	133	18311168	atpE	CPE2186	-	F0F1 ATP synthase subunit epsilon
2187	 36.55	+2	2508271..2509668	-	465	18311169	atpB	CPE2187	-	F0F1 ATP synthase subunit beta
2188	 30.16	0	2509682..2510533	-	283	18311170	atpG	CPE2188	-	F0F1 ATP synthase subunit gamma
2189	 33.53	+1	2510598..2512106	-	502	18311171	atpA	CPE2189	-	F0F1 ATP synthase subunit alpha
2190	 26.85	0	2512117..2512656	-	179	18311172	atpD	CPE2190	-	F0F1 ATP synthase subunit delta
2191	 28.75	0	2512659..2513138	-	159	18311173	atpF	CPE2191	-	F0F1 ATP synthase subunit B
2192	 38.36	+2	2513238..2513456	-	72	18311174	atpL	CPE2192	-	F0F1 ATP synthase subunit C
2193	 31.41	0	2513517..2514191	-	224	18311175	atpI	CPE2193	-	F0F1 ATP synthase subunit A
2194	 23.77	-1	2514247..2514612	-	121	18311176	-	CPE2194	-	hypothetical protein
2195	 35.54	+1	2515294..2516472	-	392	18311177	atoB	CPE2195	-	acetyl-CoA acetyltransferase
2196	 30.04	0	2516741..2517895	-	384	18311178	-	CPE2196	-	UDP-N-acetylglucosamine 2-epimerase
2197	 33.49	+1	2517959..2518588	-	209	18311179	upp	CPE2197	-	uracil phosphoribosyltransferase
2198	 32.00	0	2518633..2519082	-	149	18311180	-	CPE2198	-	ribose-5-phosphate isomerase B
2199	 16.67	-2	2519162..2519317	-	51	18311181	-	CPE2199	-	hypothetical protein
2200	 31.15	0	2519346..2520398	-	350	18311182	-	CPE2200	-	Sua5/YciO/YrdC/YwlC family protein
2201	 22.84	-1	2520421..2521011	-	196	18311183	-	CPE2201	-	hypothetical protein
2202	 33.24	+1	2521090..2522172	-	360	18311184	prfA	CPE2202	-	peptide chain release factor 1
2203	 28.36	0	2522229..2523938	-	569	18311185	-	CPE2203	-	hypothetical protein
2204	 29.17	0	2524022..2524621	-	199	18311186	tdk	CPE2204	-	thymidine kinase
2205	 35.75	+1	2524777..2524983	+	68	18311187	rpmE	CPE2205	-	50S ribosomal protein L31
2206	 26.04	0	2525092..2526216	+	374	18311188	-	CPE2206	-	putative monogalactosyldiacylglycerol synthase
2207	 29.44	0	2526259..2527698	-	479	18311189	rho	CPE2207	-	transcription termination factor Rho
2208	 33.83	+1	2527964..2529571	-	535	18311190	ctrA	CPE2208	-	CTP synthetase
2209	 29.05	0	2529911..2530330	-	139	18311191	-	CPE2209	-	hypothetical protein
2210	 30.07	0	2530353..2531333	-	326	18311192	-	CPE2210	-	hypothetical protein
2211	 26.51	0	2531379..2532008	-	209	18311193	spoIIR	CPE2211	-	stage II sporulation protein R
2212	 27.22	0	2532078..2532944	-	288	18311194	ipk	CPE2212	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2213	 29.56	0	2533080..2535704	-	874	18311195	cphA	CPE2213	-	cyanophycin synthetase
2214	 30.07	0	2535691..2536518	-	275	18311196	cphB	CPE2214	-	cyanophycinase
2215	 28.85	0	2536618..2538180	-	520	18311197	-	CPE2215	-	lysM domain protein
2216	 33.33	+1	2538540..2538776	-	78	18311198	-	CPE2216	-	hypothetical protein
2217	 28.49	0	2538939..2539826	-	295	18311199	-	CPE2217	-	peptidase family protein
2218	 27.56	0	2540029..2541033	-	334	18311200	cotS	CPE2218	-	spore coat protein CotS
2219	 27.57	0	2541142..2542269	+	375	18311201	-	CPE2219	-	mannosyltransferase B
2220	 22.84	-1	2542452..2543480	-	342	18311202	cotS	CPE2220	-	spore coat protein
2221	 24.27	-1	2543496..2544179	-	227	18311203	-	CPE2221	-	hypothetical protein
2222	 27.88	0	2544187..2545194	-	335	18311204	cotS	CPE2222	-	spore coat protein
2223	 29.06	0	2545323..2546468	+	381	18311205	-	CPE2223	-	mannosyltransferase B
2224	 27.68	0	2546702..2547232	-	176	18311206	-	CPE2224	-	hypothetical protein
2225	 26.61	0	2547425..2547796	-	123	18311207	-	CPE2225	-	hypothetical protein
2226	 30.63	0	2547937..2548380	+	147	18311208	-	CPE2226	-	hypothetical protein
2227	 27.50	0	2548415..2549443	+	342	18311209	apbA	CPE2227	-	thiamin biosynthesis lipoprotein
2228	 29.33	0	2549567..2550691	-	374	18311210	eutH	CPE2228	-	ethanolamine transporter
2229	 26.36	0	2550854..2551183	-	109	18311211	-	CPE2229	-	PTS system protein
2230	 30.65	0	2551428..2552807	-	459	18311212	-	CPE2230	-	serine protease
2231	 26.96	0	2552924..2553943	-	339	18311213	-	CPE2231	-	hydrolase, alpha/beta fold family
2232	 34.12	+1	2553958..2554977	-	339	18311214	-	CPE2232	-	O-sialoglycoprotein endopeptidase
2233	 26.38	0	2555119..2555751	+	210	18311215	-	CPE2233	-	hypothetical protein
2234	 24.78	-1	2555760..2556320	+	186	18311216	-	CPE2234	-	acyl-CoA thioesterase I
2235	 31.15	0	2556457..2557419	-	320	18311217	-	CPE2235	-	oxidoreductase, pyridine nucleotide-disulphide family
2236	 28.10	0	2557451..2558023	-	190	18311218	-	CPE2236	-	hypothetical protein
2237	 27.04	0	2558205..2560094	+	629	18311219	-	CPE2237	-	hypothetical protein
2238	 27.49	0	2560233..2561756	-	507	18311220	-	CPE2238	-	putative lipoprotein
2239	 26.98	0	2561773..2563188	-	471	18311221	-	CPE2239	-	two-component sensor histidine kinase
2240	 28.63	0	2563369..2563836	-	155	18311222	-	CPE2240	-	two-component response regulator
2241	 28.76	0	2563901..2564053	-	50	18311223	-	CPE2241	-	hypothetical protein
2242	 30.59	0	2569898..2570698	-	266	18311224	-	CPE2242	-	hypothetical protein
2243	 27.49	0	2570886..2571689	-	267	18311225	smtA	CPE2243	-	S-adenosylmethionine-dependent methltransferase
2244	 24.74	-1	2571905..2572660	+	251	18311226	-	CPE2244	-	hypothetical protein
2245	 26.73	0	2572779..2573081	+	100	18311227	-	CPE2245	-	hypothetical protein
2246	 29.22	0	2573156..2573617	-	153	18311228	-	CPE2246	-	hypothetical protein
2247	 24.91	-1	2573650..2574219	-	189	18311229	-	CPE2247	-	hypothetical protein
2248	 28.25	0	2579928..2580497	-	189	18311230	-	CPE2248	-	chromate transporter
2249	 27.17	0	2580484..2581035	-	183	18311231	-	CPE2249	-	chromate transporter
2250	 24.11	-1	2581458..2582162	+	234	18311232	-	CPE2250	-	hypothetical protein
2251	 30.65	0	2582494..2583945	-	483	18311233	pepD	CPE2251	-	aminoacyl-histidine dipeptidase
2252	 29.30	0	2586002..2586472	-	156	18311234	-	CPE2252	-	Ser/Thr protein phosphatase family protein
2253	 27.64	0	2586484..2587098	-	204	18311235	-	CPE2253	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2254	 33.60	+1	2587100..2587846	-	248	18311236	rnpH	CPE2254	-	ribonuclease PH
2255	 25.29	-1	2588068..2589771	+	567	18311237	-	CPE2255	-	hypothetical protein
2256	 26.30	0	2589975..2591495	-	506	18311238	-	CPE2256	-	oligopeptide-binding protein
2257	 23.87	-1	2593111..2593575	-	154	18311239	-	CPE2257	-	hypothetical protein
2258	 24.38	-1	2593699..2594022	+	107	18311240	-	CPE2258	-	hypothetical protein
2259	 30.53	0	2594060..2596057	-	665	18311241	ligA	CPE2259	-	NAD-dependent DNA ligase LigA
2260	 29.61	0	2596086..2598341	-	751	18311242	-	CPE2260	-	ATP-dependent DNA helicase PcrA
2261	 27.12	0	2598553..2599341	-	262	18311243	-	CPE2261	-	hypothetical protein
2262	 27.87	0	2599358..2599906	-	182	18311244	-	CPE2262	-	hypothetical protein
2263	 27.23	0	2599908..2600579	-	223	18311245	-	CPE2263	-	hypothetical protein
2264	 29.58	0	2601132..2601851	-	239	18311246	-	CPE2264	-	16S pseudouridylate synthase
2265	 27.12	0	2602225..2604285	-	686	18311247	-	CPE2265	-	two component regulator three Y motif protein
2266	 29.33	0	2604658..2605107	-	149	18311248	-	CPE2266	-	hypothetical protein
2267	 33.63	+1	2605305..2606657	-	450	18311249	pgi	CPE2267	-	glucose-6-phosphate isomerase
2268	 26.19	0	2606687..2606896	-	69	18311250	-	CPE2268	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.