IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2124	 28.77	0	2436772..2437341	-	189	18311106	-	CPE2124	-	HD domain protein
2125	 27.09	0	2437344..2437952	-	202	18311107	nadD	CPE2125	-	nicotinic acid mononucleotide adenylyltransferase
2126	 29.04	0	2437954..2438256	-	100	18311108	-	CPE2126	-	putative RNA-binding protein
2127	 35.04	+1	2438274..2439560	-	428	18311109	obgE	CPE2127	-	GTPase ObgE
2128	 36.63	+2	2439728..2440030	-	100	18311110	rpmA	CPE2128	-	50S ribosomal protein L27
2129	 33.99	+1	2440034..2440339	-	101	18311111	-	CPE2129	-	hypothetical protein
2130	 36.54	+2	2440415..2440726	-	103	18311112	rplU	CPE2130	-	50S ribosomal protein L21
2131	 26.61	0	2440852..2442294	-	480	18311113	rng	CPE2131	-	ribonuclease, Rne/Rng family
2132	 28.53	0	2442311..2443018	-	235	18311114	-	CPE2132	-	hypothetical protein
2133	 31.66	0	2442996..2444849	-	617	18311115	-	CPE2133	-	radical SAM domain protein
2134	 23.27	-1	2444981..2445835	-	284	18311116	-	CPE2134	-	peptidase, M50 family
2135	 27.16	0	2445832..2446674	-	280	18311117	-	CPE2135	-	hypothetical protein
2136	 31.73	0	2446824..2447948	-	374	18311118	spoVE	CPE2136	-	cell cycle protein, FtsW/RodA/SpoVE family
2137	 28.94	0	2448096..2448368	-	90	18311119	minE	CPE2137	-	cell division topological specificity factor MinE
2138	 31.33	0	2448379..2449176	-	265	18311120	minD	CPE2138	-	septum site-determining protein MinD
2139	 29.09	0	2449205..2449840	-	211	18311121	minC	CPE2139	-	septum formation inhibitor
2140	 30.99	0	2450087..2453158	-	1023	18311122	-	CPE2140	-	penicillin-binding protein 2
2141	 27.11	0	2453167..2453664	-	165	18311123	-	CPE2141	-	rod shape-determining protein MreD
2142	 30.28	0	2453680..2454531	-	283	18311124	mreC	CPE2142	-	rod shape-determining protein MreC
2143	 35.57	+1	2454535..2455563	-	342	18311125	mreB	CPE2143	-	rod shape-determining protein
2144	 31.29	0	2455583..2456266	-	227	18311126	radC	CPE2144	-	DNA repair protein RadC
2145	 30.40	0	2456313..2456891	-	192	18311127	maf	CPE2145	-	Maf-like protein
2146	 28.61	0	2457117..2457920	-	267	18311128	-	CPE2146	-	hypothetical protein
2147	 28.45	0	2458182..2459000	-	272	18311129	-	CPE2147	-	hypothetical protein
2148	 29.89	0	2459328..2460779	-	483	18311130	pepD	CPE2148	-	aminoacyl-histidine dipeptidase
2149	 32.00	0	2460912..2462336	+	474	18311131	pykA	CPE2149	-	pyruvate kinase
2150	 29.02	0	2462453..2463589	-	378	18311132	rpsA	CPE2150	-	30S ribosomal protein S1
2151	 33.33	+1	2463735..2463938	-	67	18311133	-	CPE2151	-	heavy metal binding protein
2152	 29.28	0	2464043..2464807	-	254	18311134	-	CPE2152	-	hypothetical protein
2153	 27.49	0	2464973..2465383	-	136	18311135	guaB	CPE2153	-	inosine-5'-monophosphate dehydrogenase
2154	 26.25	0	2465469..2466371	-	300	18311136	-	CPE2154	-	exonuclease family protein
2155	 27.75	0	2466626..2468380	-	584	18311137	-	CPE2155	-	hypothetical protein
2156	 27.40	0	2468553..2470340	-	595	18311138	-	CPE2156	-	mutS domain protein
2157	 33.99	+1	2470664..2472193	-	509	18311139	-	CPE2157	-	PTS system, glucose-specific IIBC component
2158	 29.88	0	2472360..2473256	-	298	18311140	-	CPE2158	-	ABC transporter substrate-binding protein
2159	 23.26	-1	2473482..2476250	-	922	18311141	-	CPE2159	-	hypothetical protein
2160	 27.38	0	2476240..2477382	-	380	18311142	-	CPE2160	-	phosphoesterase
2161	 35.52	+1	2477660..2477842	-	60	18311143	-	CPE2161	-	small acid-soluble protein Ssp1
2162	 27.92	0	2477982..2480159	-	725	18311144	cpdC	CPE2162	-	2`,3`-cyclic-nucleotide 2`-phosphodiesterase
2163	 28.02	0	2480759..2481379	-	206	18311145	-	CPE2163	-	CBS domain protein
2164	 29.25	0	2481679..2482143	+	154	18311146	-	CPE2164	-	hypothetical protein
2165	 30.64	0	2482137..2482841	+	234	18311147	-	CPE2165	-	glycoprotease family protein
2166	 29.08	0	2482841..2483287	+	148	18311148	-	CPE2166	-	ribosomal-protein-alanine acetyltransferase
2167	 30.82	0	2483381..2483977	-	198	18311149	-	CPE2167	-	hypothetical protein
2168	 29.63	0	2484325..2486487	-	720	18311150	-	CPE2168	-	hypothetical protein
2169	 28.27	0	2486599..2487942	+	447	18311151	-	CPE2169	-	peptidase family protein
2170	 32.61	+1	2488191..2489162	-	323	18311152	prfB	CPE2170	-	peptide chain release factor 2
2171	 32.18	0	2489545..2492067	-	840	18311153	secA	CPE2171	-	preprotein translocase subunit SecA
2172	 28.52	0	2492302..2492841	-	179	18311154	-	CPE2172	-	30S ribosomal protein S30AE
2173	 25.00	-1	2493292..2493951	-	219	18311155	comFC	CPE2173	-	comFC protein
2174	 23.05	-1	2493927..2494889	-	320	18311156	-	CPE2174	-	hypothetical protein
2175	 29.53	0	2494907..2497141	-	744	18311157	recD	CPE2175	-	helicase, RecD/TraA family
2176	 31.93	0	2497278..2498414	+	378	18311158	nagA	CPE2176	-	N-acetylglucosamine-6-phosphate deacetylase
2177	 34.95	+1	2498554..2499729	-	391	161485642	metK	CPE2177	-	S-adenosylmethionine synthetase
2178	 23.88	-1	2500946..2501590	-	214	18311160	-	CPE2178	-	hypothetical protein
2179	 27.68	0	2501696..2502226	+	176	18311161	-	CPE2179	-	putative sporulation protein YyaC
2180	 35.36	+1	2502265..2503302	-	345	18311162	mreV	CPE2180	-	cell shape determining protein
2181	 28.17	0	2503393..2503644	-	83	18311163	spoIIID	CPE2181	-	stage III sporulation protein D
2182	 31.52	0	2503719..2504489	-	256	18311164	-	CPE2182	-	hypothetical protein
2183	 27.76	0	2504606..2505628	-	340	18311165	spoIID	CPE2183	-	stage II sporulation protein D
2184	 31.20	0	2505740..2507005	-	421	18311166	murA	CPE2184	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2185	 22.02	-2	2507028..2507672	-	214	18311167	-	CPE2185	-	hypothetical protein
2186	 32.09	0	2507854..2508255	-	133	18311168	atpE	CPE2186	-	F0F1 ATP synthase subunit epsilon
2187	 36.55	+2	2508271..2509668	-	465	18311169	atpB	CPE2187	-	F0F1 ATP synthase subunit beta
2188	 30.16	0	2509682..2510533	-	283	18311170	atpG	CPE2188	-	F0F1 ATP synthase subunit gamma
2189	 33.53	+1	2510598..2512106	-	502	18311171	atpA	CPE2189	-	F0F1 ATP synthase subunit alpha
2190	 26.85	0	2512117..2512656	-	179	18311172	atpD	CPE2190	-	F0F1 ATP synthase subunit delta
2191	 28.75	0	2512659..2513138	-	159	18311173	atpF	CPE2191	-	F0F1 ATP synthase subunit B
2192	 38.36	+2	2513238..2513456	-	72	18311174	atpL	CPE2192	-	F0F1 ATP synthase subunit C
2193	 31.41	0	2513517..2514191	-	224	18311175	atpI	CPE2193	-	F0F1 ATP synthase subunit A
2194	 23.77	-1	2514247..2514612	-	121	18311176	-	CPE2194	-	hypothetical protein
2195	 35.54	+1	2515294..2516472	-	392	18311177	atoB	CPE2195	-	acetyl-CoA acetyltransferase
2196	 30.04	0	2516741..2517895	-	384	18311178	-	CPE2196	-	UDP-N-acetylglucosamine 2-epimerase
2197	 33.49	+1	2517959..2518588	-	209	18311179	upp	CPE2197	-	uracil phosphoribosyltransferase
2198	 32.00	0	2518633..2519082	-	149	18311180	-	CPE2198	-	ribose-5-phosphate isomerase B
2199	 16.67	-2	2519162..2519317	-	51	18311181	-	CPE2199	-	hypothetical protein
2200	 31.15	0	2519346..2520398	-	350	18311182	-	CPE2200	-	Sua5/YciO/YrdC/YwlC family protein
2201	 22.84	-1	2520421..2521011	-	196	18311183	-	CPE2201	-	hypothetical protein
2202	 33.24	+1	2521090..2522172	-	360	18311184	prfA	CPE2202	-	peptide chain release factor 1
2203	 28.36	0	2522229..2523938	-	569	18311185	-	CPE2203	-	hypothetical protein
2204	 29.17	0	2524022..2524621	-	199	18311186	tdk	CPE2204	-	thymidine kinase
2205	 35.75	+1	2524777..2524983	+	68	18311187	rpmE	CPE2205	-	50S ribosomal protein L31
2206	 26.04	0	2525092..2526216	+	374	18311188	-	CPE2206	-	putative monogalactosyldiacylglycerol synthase
2207	 29.44	0	2526259..2527698	-	479	18311189	rho	CPE2207	-	transcription termination factor Rho
2208	 33.83	+1	2527964..2529571	-	535	18311190	ctrA	CPE2208	-	CTP synthetase
2209	 29.05	0	2529911..2530330	-	139	18311191	-	CPE2209	-	hypothetical protein
2210	 30.07	0	2530353..2531333	-	326	18311192	-	CPE2210	-	hypothetical protein
2211	 26.51	0	2531379..2532008	-	209	18311193	spoIIR	CPE2211	-	stage II sporulation protein R
2212	 27.22	0	2532078..2532944	-	288	18311194	ipk	CPE2212	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2213	 29.56	0	2533080..2535704	-	874	18311195	cphA	CPE2213	-	cyanophycin synthetase
2214	 30.07	0	2535691..2536518	-	275	18311196	cphB	CPE2214	-	cyanophycinase
2215	 28.85	0	2536618..2538180	-	520	18311197	-	CPE2215	-	lysM domain protein
2216	 33.33	+1	2538540..2538776	-	78	18311198	-	CPE2216	-	hypothetical protein
2217	 28.49	0	2538939..2539826	-	295	18311199	-	CPE2217	-	peptidase family protein
2218	 27.56	0	2540029..2541033	-	334	18311200	cotS	CPE2218	-	spore coat protein CotS
2219	 27.57	0	2541142..2542269	+	375	18311201	-	CPE2219	-	mannosyltransferase B
2220	 22.84	-1	2542452..2543480	-	342	18311202	cotS	CPE2220	-	spore coat protein
2221	 24.27	-1	2543496..2544179	-	227	18311203	-	CPE2221	-	hypothetical protein
2222	 27.88	0	2544187..2545194	-	335	18311204	cotS	CPE2222	-	spore coat protein
2223	 29.06	0	2545323..2546468	+	381	18311205	-	CPE2223	-	mannosyltransferase B
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.