IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1998	 25.24	-1	2289285..2290334	-	349	18310980	-	CPE1998	-	hypothetical protein
1999	 32.34	0	2290351..2291361	-	336	18310981	-	CPE1999	-	hypothetical protein
2000	 30.62	0	2292272..2292529	-	85	18310982	-	CPE2000	-	hypothetical protein
2001	 26.23	0	2292691..2293380	-	229	18310983	-	CPE2001	-	radical SAM domain protein
2002	 27.06	0	2293398..2293955	-	185	18310984	-	CPE2002	-	hypothetical protein
2003	 32.01	0	2293974..2294954	-	326	18310985	-	CPE2003	-	nucleoside hydrolase, IUNH family
2004	 29.28	0	2295468..2296256	-	262	18310986	-	CPE2004	-	hypothetical protein
2005	 27.83	0	2296256..2296945	-	229	18310987	-	CPE2005	-	hypothetical protein
2006	 26.13	0	2296959..2297846	-	295	18310988	-	CPE2006	-	hypothetical protein
2007	 32.26	0	2298082..2299203	-	373	18310989	sigA	CPE2007	-	RNA polymerase sigma factor RpoD
2008	 28.75	0	2299209..2300996	-	595	18310990	dnaG	CPE2008	-	DNA primase
2009	 30.90	0	2301165..2302193	-	342	18310991	dgtP	CPE2009	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2010	 25.74	0	2302395..2303474	+	359	18310992	cotS	CPE2010	-	spore coat protein
2011	 33.75	+1	2303526..2306156	-	876	18310993	podK	CPE2011	-	pyruvate phosphate dikinase
2012	 33.65	+1	2306257..2306889	-	210	18310994	-	CPE2012	-	CBS domain protein
2013	 30.78	0	2307094..2307720	-	208	18310995	-	CPE2013	-	hypothetical protein
2014	 28.02	0	2307726..2308403	-	225	18310996	recO	CPE2014	-	DNA repair protein RecO
2015	 28.62	0	2308479..2309369	-	296	18310997	era	CPE2015	-	GTP-binding protein Era
2016	 31.08	0	2309378..2309776	-	132	18310998	-	CPE2016	-	cytidine deaminase
2017	 31.04	0	2309820..2310518	-	232	18310999	dgkA	CPE2017	-	diacylglycerol kinase/PAP2 family protein
2018	 29.98	0	2310546..2311052	-	168	18311000	-	CPE2018	-	putative metalloprotease
2019	 29.83	0	2311054..2313108	-	684	18311001	-	CPE2019	-	hypothetical protein
2020	 28.23	0	2313145..2314281	-	378	18311002	spoIV	CPE2020	-	stage IV sporulation protein
2021	 28.72	0	2314283..2314564	-	93	18311003	-	CPE2021	-	sporulation protein YqfC
2022	 36.22	+2	2314789..2315238	-	149	18311004	-	CPE2022	-	GatB/Yqey domain protein
2023	 34.46	+1	2315288..2315464	-	58	18311005	rpsU	CPE2023	-	30S ribosomal protein S21
2024	 34.20	+1	2315584..2315928	-	114	18311006	-	CPE2024	-	HIT family protein
2025	 30.80	0	2315997..2317301	-	434	18311007	-	CPE2025	-	MiaB-like tRNA modifying protein
2026	 31.47	0	2317301..2318053	-	250	18311008	-	CPE2026	-	hypothetical protein
2027	 33.23	+1	2318076..2319017	-	313	18311009	prmA	CPE2027	-	ribosomal protein L11 methyltransferase
2028	 28.57	0	2319244..2319600	-	118	18311010	-	CPE2028	-	GntR family transcriptional regulator
2029	 25.19	-1	2319602..2320780	-	392	18311011	-	CPE2029	-	hypothetical protein
2030	 25.12	-1	2320796..2321623	-	275	18311012	-	CPE2030	-	hypothetical protein
2031	 28.72	0	2321610..2322302	-	230	18311013	-	CPE2031	-	ABC transporter
2032	 36.43	+2	2322479..2323642	-	387	18311014	dnaJ	CPE2032	-	chaperone protein DnaJ
2033	 34.68	+1	2323756..2325615	-	619	18311015	dnaK	CPE2033	-	chaperone protein DnaK
2034	 30.30	0	2325672..2326298	-	208	18311016	grpE	CPE2034	-	co-chaperone GrpE
2035	 29.90	0	2326329..2327348	-	339	18311017	hrcA	CPE2035	-	heat-inducible transcription repressor
2036	 28.31	0	2327545..2328678	-	377	18311018	hemN	CPE2036	-	coproporphyrinogen III oxidase
2037	 24.44	-1	2328948..2329217	-	89	18311019	-	CPE2037	-	hypothetical protein
2038	 33.22	+1	2329405..2331207	-	600	18311020	lepA	CPE2038	-	GTP-binding protein LepA
2039	 23.97	-1	2331328..2331690	-	120	18311021	-	CPE2039	-	hypothetical protein
2040	 29.37	0	2331745..2332830	-	361	18311022	spoIIP	CPE2040	-	stage II sporulation protein P
2041	 34.36	+1	2332979..2333956	-	325	18311023	gpr	CPE2041	-	germination protease
2042	 32.20	0	2334152..2334415	+	87	18311024	rpsT	CPE2042	-	30S ribosomal protein S20
2043	 25.69	0	2334511..2335557	-	348	18311025	holA	CPE2043	-	DNA polymerase III subunit delta
2044	 25.33	-1	2335601..2337211	-	536	18311026	-	CPE2044	-	hypothetical protein
2045	 33.88	+1	2337263..2337628	-	121	18311027	spoVAE	CPE2045	-	stage V sporulation protein AE
2046	 33.14	+1	2337684..2338703	-	339	18311028	spoVAD	CPE2046	-	stage V sporulation protein AD
2047	 33.33	+1	2338709..2339176	-	155	18311029	spoVAC	CPE2047	-	stage V sporulation protein AC
2048	 30.29	0	2339314..2340069	-	251	18311030	sigF	CPE2048	-	sporulation sigma factor SigF
2049	 30.73	0	2340087..2340509	-	140	18311031	spoIIAB	CPE2049	-	anti-sigma F factor
2050	 27.68	0	2340523..2340858	-	111	18311032	spoIIAA	CPE2050	-	anti-sigma F factor antagonist
2051	 28.22	0	2340992..2343277	-	761	18311033	-	CPE2051	-	ATP-dependent protease
2052	 33.33	+1	2343478..2344152	-	224	18311034	deoC	CPE2052	-	deoxyribose-phosphate aldolase
2053	 27.21	0	2344409..2344816	+	135	18311035	-	CPE2053	-	hypothetical protein
2054	 30.12	0	2345077..2347626	-	849	18311036	-	CPE2054	-	cation-transporting ATPase
2055	 32.55	0	2347871..2349520	+	549	18311037	-	CPE2055	-	putative manganese-dependent inorganic pyrophosphatase
2056	 24.26	-1	2349564..2350070	-	168	18311038	-	CPE2056	-	hypothetical protein
2057	 37.33	+2	2350288..2350662	-	124	18311039	-	CPE2057	-	hypothetical protein
2058	 31.47	0	2350872..2352266	-	464	18311040	-	CPE2058	-	glutamate decarboxylase
2059	 29.55	0	2352852..2353907	-	351	18311041	-	CPE2059	-	hypothetical protein
2060	 32.28	0	2354027..2355445	-	472	18311042	-	CPE2060	-	glutamate gamma-aminobutyrate antiporter
2061	 37.88	+2	2356148..2359663	-	1171	18311043	-	CPE2061	-	pyruvate-flavodoxin oxidoreductase
2062	 31.22	0	2359768..2360193	-	141	18311044	-	CPE2062	-	flavodoxin
2063	 27.75	0	2360400..2361473	-	357	18311045	murG	CPE2063	-	N-acetylglucosaminyl transferase
2064	 33.89	+1	2361658..2361837	+	59	18311046	-	CPE2064	-	small acid-soluble spore protein C1
2065	 30.30	0	2361959..2363737	-	592	18311047	recJ	CPE2065	-	single-stranded-DNA-specific exonuclease RecJ
2066	 26.07	0	2363749..2364960	-	403	18311048	-	CPE2066	-	peptidase, M16 family
2067	 32.82	+1	2365174..2365755	-	193	18311049	-	CPE2067	-	DJ-1 family protein
2068	 30.68	0	2365761..2368700	-	979	18311050	parC	CPE2068	-	DNA topoisomerase IV subunit A
2069	 31.49	0	2368714..2370666	-	650	18311051	parE	CPE2069	-	DNA topoisomerase IV subunit B
2070	 29.88	0	2370650..2371720	-	356	18311052	-	CPE2070	-	tRNA 2-selenouridine synthase
2071	 29.62	0	2371965..2373365	-	466	18311053	-	CPE2071	-	glycosyl transferase, group 2 family protein
2072	 24.94	-1	2374217..2375455	+	412	18311054	-	CPE2072	-	putative UV damage endonuclease
2073	 27.75	0	2375540..2376148	+	202	18311055	-	CPE2073	-	putative sporulation protein YtaF
2074	 32.05	0	2376317..2377486	-	389	18311056	-	CPE2074	-	trans-2-enoyl-CoA reductase
2075	 32.25	0	2377731..2379209	-	492	18311057	-	CPE2075	-	amino acid permease family protein
2076	 30.03	0	2379557..2381797	-	746	18311058	-	CPE2076	-	alpha-glucosidase
2077	 31.54	0	2381846..2382739	-	297	18311059	-	CPE2077	-	ROK family protein
2078	 31.68	0	2382880..2384328	-	482	18311060	-	CPE2078	-	hypothetical protein
2079	 26.26	0	2384713..2385207	+	164	18311061	-	CPE2079	-	hypothetical protein
2080	 30.21	0	2385275..2388409	-	1044	18311062	-	CPE2080	-	alpha-mannosidase
2081	 30.62	0	2388727..2389683	-	318	18311063	-	CPE2081	-	ABC transporter
2082	 29.82	0	2389701..2390669	-	322	18311064	-	CPE2082	-	ABC transporter
2083	 31.03	0	2390899..2391375	-	158	18311065	moaC	CPE2083	-	molybdenum cofactor biosynthesis protein C
2084	 27.25	0	2391414..2392070	-	218	18311066	modB	CPE2084	-	molybdate ABC transporter permease
2085	 28.19	0	2392067..2392843	-	258	18311067	modA	CPE2085	-	molybdenum ABC transporter
2086	 32.32	0	2392828..2393319	-	163	18311068	moaB	CPE2086	-	molybdenum cofactor synthesis protein
2087	 25.26	-1	2393660..2395183	-	507	18311069	-	CPE2087	-	DNA-binding response regulator, AraC family
2088	 26.42	0	2395188..2396924	-	578	18311070	-	CPE2088	-	sensor histidine kinase
2089	 23.45	-1	2397146..2397823	+	225	18311071	-	CPE2089	-	hypothetical protein
2090	 28.03	0	2398089..2399426	+	445	18311072	fmhB	CPE2090	-	FemAB family protein
2091	 26.80	0	2399789..2400094	+	101	18311073	-	CPE2091	-	PadR family transcriptional regulator
2092	 30.62	0	2400141..2400878	-	245	18311074	-	CPE2092	-	amino acid ABC transporter
2093	 29.42	0	2400897..2402405	-	502	18311075	-	CPE2093	-	amino acid ABC transporter
2094	 27.95	0	2402578..2403357	+	259	18311076	-	CPE2094	-	hypothetical protein
2095	 23.02	-1	2403482..2403898	-	138	18311077	-	CPE2095	-	hypothetical protein
2096	 24.45	-1	2404405..2405226	-	273	18311078	-	CPE2096	-	hypothetical protein
2097	 26.89	0	2405245..2406501	-	418	18311079	-	CPE2097	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.