IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1971	 30.56	0	2259849..2260931	+	360	18310953	potD	CPE1971	-	spermidine/putrescine ABC transporter
1972	 30.09	0	2260966..2261397	-	143	18310954	ndk	CPE1972	-	nucleoside diphosphate kinase
1973	 30.37	0	2261582..2261851	+	89	18310955	-	CPE1973	-	acylphosphatase
1974	 23.72	-1	2261991..2262146	-	51	18310956	-	CPE1974	-	hypothetical protein
1975	 25.93	0	2262316..2262882	-	188	18310957	-	CPE1975	-	hypothetical protein
1976	 30.97	0	2263061..2264332	+	423	18310958	dacF	CPE1976	-	D-alanyl-D-alanine carboxypeptidase
1977	 29.92	0	2264387..2265031	-	214	18310959	-	CPE1977	-	pyrophosphatase PpaX
1978	 30.76	0	2265621..2266631	+	336	18310960	asnA	CPE1978	-	asparagine synthetase AsnA
1979	 24.30	-1	2266757..2267575	+	272	18310961	-	CPE1979	-	hypothetical protein
1980	 28.57	0	2267687..2268064	+	125	18310962	-	CPE1980	-	lrgA family protein
1981	 31.93	0	2268057..2268767	+	236	18310963	-	CPE1981	-	lrgB-like family protein
1982	 24.78	-1	2268864..2269319	+	151	18310964	-	CPE1982	-	hypothetical protein
1983	 30.61	0	2269532..2271694	-	720	18310965	topB	CPE1983	-	DNA topoisomerase
1984	 32.73	+1	2271934..2273091	-	385	18310966	-	CPE1984	-	hypothetical protein
1985	 27.42	0	2273254..2273760	-	168	18310967	-	CPE1985	-	TspO/MBR family protein
1986	 22.24	-1	2273797..2275833	-	678	18310968	-	CPE1986	-	sensor histidine kinase
1987	 22.10	-2	2275823..2277709	-	628	18310969	-	CPE1987	-	sensor histidine kinase
1988	 27.67	0	2277830..2278765	-	311	18310970	-	CPE1988	-	tetratricopeptide repeat protein
1989	 29.64	0	2278886..2279806	-	306	18310971	-	CPE1989	-	hydrolase, alpha/beta fold family
1990	 25.96	0	2279929..2280525	-	198	18310972	-	CPE1990	-	hypothetical protein
1991	 27.14	0	2280811..2281941	-	376	18310973	-	CPE1991	-	hypothetical protein
1992	 29.12	0	2281978..2282523	-	181	18310974	-	CPE1992	-	hypothetical protein
1993	 29.50	0	2282533..2283132	-	199	18310975	coaE	CPE1993	-	dephospho-CoA kinase
1994	 27.87	0	2283149..2285749	-	866	18310976	polA	CPE1994	-	DNA polymerase I
1995	 30.50	0	2286083..2287000	-	305	18310977	-	CPE1995	-	glutaminase
1996	 26.16	0	2287239..2287754	+	171	18310978	-	CPE1996	-	hypothetical protein
1997	 31.07	0	2287837..2289072	+	411	18310979	-	CPE1997	-	aminopeptidase
1998	 25.24	-1	2289285..2290334	-	349	18310980	-	CPE1998	-	hypothetical protein
1999	 32.34	0	2290351..2291361	-	336	18310981	-	CPE1999	-	hypothetical protein
2000	 30.62	0	2292272..2292529	-	85	18310982	-	CPE2000	-	hypothetical protein
2001	 26.23	0	2292691..2293380	-	229	18310983	-	CPE2001	-	radical SAM domain protein
2002	 27.06	0	2293398..2293955	-	185	18310984	-	CPE2002	-	hypothetical protein
2003	 32.01	0	2293974..2294954	-	326	18310985	-	CPE2003	-	nucleoside hydrolase, IUNH family
2004	 29.28	0	2295468..2296256	-	262	18310986	-	CPE2004	-	hypothetical protein
2005	 27.83	0	2296256..2296945	-	229	18310987	-	CPE2005	-	hypothetical protein
2006	 26.13	0	2296959..2297846	-	295	18310988	-	CPE2006	-	hypothetical protein
2007	 32.26	0	2298082..2299203	-	373	18310989	sigA	CPE2007	-	RNA polymerase sigma factor RpoD
2008	 28.75	0	2299209..2300996	-	595	18310990	dnaG	CPE2008	-	DNA primase
2009	 30.90	0	2301165..2302193	-	342	18310991	dgtP	CPE2009	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2010	 25.74	0	2302395..2303474	+	359	18310992	cotS	CPE2010	-	spore coat protein
2011	 33.75	+1	2303526..2306156	-	876	18310993	podK	CPE2011	-	pyruvate phosphate dikinase
2012	 33.65	+1	2306257..2306889	-	210	18310994	-	CPE2012	-	CBS domain protein
2013	 30.78	0	2307094..2307720	-	208	18310995	-	CPE2013	-	hypothetical protein
2014	 28.02	0	2307726..2308403	-	225	18310996	recO	CPE2014	-	DNA repair protein RecO
2015	 28.62	0	2308479..2309369	-	296	18310997	era	CPE2015	-	GTP-binding protein Era
2016	 31.08	0	2309378..2309776	-	132	18310998	-	CPE2016	-	cytidine deaminase
2017	 31.04	0	2309820..2310518	-	232	18310999	dgkA	CPE2017	-	diacylglycerol kinase/PAP2 family protein
2018	 29.98	0	2310546..2311052	-	168	18311000	-	CPE2018	-	putative metalloprotease
2019	 29.83	0	2311054..2313108	-	684	18311001	-	CPE2019	-	hypothetical protein
2020	 28.23	0	2313145..2314281	-	378	18311002	spoIV	CPE2020	-	stage IV sporulation protein
2021	 28.72	0	2314283..2314564	-	93	18311003	-	CPE2021	-	sporulation protein YqfC
2022	 36.22	+2	2314789..2315238	-	149	18311004	-	CPE2022	-	GatB/Yqey domain protein
2023	 34.46	+1	2315288..2315464	-	58	18311005	rpsU	CPE2023	-	30S ribosomal protein S21
2024	 34.20	+1	2315584..2315928	-	114	18311006	-	CPE2024	-	HIT family protein
2025	 30.80	0	2315997..2317301	-	434	18311007	-	CPE2025	-	MiaB-like tRNA modifying protein
2026	 31.47	0	2317301..2318053	-	250	18311008	-	CPE2026	-	hypothetical protein
2027	 33.23	+1	2318076..2319017	-	313	18311009	prmA	CPE2027	-	ribosomal protein L11 methyltransferase
2028	 28.57	0	2319244..2319600	-	118	18311010	-	CPE2028	-	GntR family transcriptional regulator
2029	 25.19	-1	2319602..2320780	-	392	18311011	-	CPE2029	-	hypothetical protein
2030	 25.12	-1	2320796..2321623	-	275	18311012	-	CPE2030	-	hypothetical protein
2031	 28.72	0	2321610..2322302	-	230	18311013	-	CPE2031	-	ABC transporter
2032	 36.43	+2	2322479..2323642	-	387	18311014	dnaJ	CPE2032	-	chaperone protein DnaJ
2033	 34.68	+1	2323756..2325615	-	619	18311015	dnaK	CPE2033	-	chaperone protein DnaK
2034	 30.30	0	2325672..2326298	-	208	18311016	grpE	CPE2034	-	co-chaperone GrpE
2035	 29.90	0	2326329..2327348	-	339	18311017	hrcA	CPE2035	-	heat-inducible transcription repressor
2036	 28.31	0	2327545..2328678	-	377	18311018	hemN	CPE2036	-	coproporphyrinogen III oxidase
2037	 24.44	-1	2328948..2329217	-	89	18311019	-	CPE2037	-	hypothetical protein
2038	 33.22	+1	2329405..2331207	-	600	18311020	lepA	CPE2038	-	GTP-binding protein LepA
2039	 23.97	-1	2331328..2331690	-	120	18311021	-	CPE2039	-	hypothetical protein
2040	 29.37	0	2331745..2332830	-	361	18311022	spoIIP	CPE2040	-	stage II sporulation protein P
2041	 34.36	+1	2332979..2333956	-	325	18311023	gpr	CPE2041	-	germination protease
2042	 32.20	0	2334152..2334415	+	87	18311024	rpsT	CPE2042	-	30S ribosomal protein S20
2043	 25.69	0	2334511..2335557	-	348	18311025	holA	CPE2043	-	DNA polymerase III subunit delta
2044	 25.33	-1	2335601..2337211	-	536	18311026	-	CPE2044	-	hypothetical protein
2045	 33.88	+1	2337263..2337628	-	121	18311027	spoVAE	CPE2045	-	stage V sporulation protein AE
2046	 33.14	+1	2337684..2338703	-	339	18311028	spoVAD	CPE2046	-	stage V sporulation protein AD
2047	 33.33	+1	2338709..2339176	-	155	18311029	spoVAC	CPE2047	-	stage V sporulation protein AC
2048	 30.29	0	2339314..2340069	-	251	18311030	sigF	CPE2048	-	sporulation sigma factor SigF
2049	 30.73	0	2340087..2340509	-	140	18311031	spoIIAB	CPE2049	-	anti-sigma F factor
2050	 27.68	0	2340523..2340858	-	111	18311032	spoIIAA	CPE2050	-	anti-sigma F factor antagonist
2051	 28.22	0	2340992..2343277	-	761	18311033	-	CPE2051	-	ATP-dependent protease
2052	 33.33	+1	2343478..2344152	-	224	18311034	deoC	CPE2052	-	deoxyribose-phosphate aldolase
2053	 27.21	0	2344409..2344816	+	135	18311035	-	CPE2053	-	hypothetical protein
2054	 30.12	0	2345077..2347626	-	849	18311036	-	CPE2054	-	cation-transporting ATPase
2055	 32.55	0	2347871..2349520	+	549	18311037	-	CPE2055	-	putative manganese-dependent inorganic pyrophosphatase
2056	 24.26	-1	2349564..2350070	-	168	18311038	-	CPE2056	-	hypothetical protein
2057	 37.33	+2	2350288..2350662	-	124	18311039	-	CPE2057	-	hypothetical protein
2058	 31.47	0	2350872..2352266	-	464	18311040	-	CPE2058	-	glutamate decarboxylase
2059	 29.55	0	2352852..2353907	-	351	18311041	-	CPE2059	-	hypothetical protein
2060	 32.28	0	2354027..2355445	-	472	18311042	-	CPE2060	-	glutamate gamma-aminobutyrate antiporter
2061	 37.88	+2	2356148..2359663	-	1171	18311043	-	CPE2061	-	pyruvate-flavodoxin oxidoreductase
2062	 31.22	0	2359768..2360193	-	141	18311044	-	CPE2062	-	flavodoxin
2063	 27.75	0	2360400..2361473	-	357	18311045	murG	CPE2063	-	N-acetylglucosaminyl transferase
2064	 33.89	+1	2361658..2361837	+	59	18311046	-	CPE2064	-	small acid-soluble spore protein C1
2065	 30.30	0	2361959..2363737	-	592	18311047	recJ	CPE2065	-	single-stranded-DNA-specific exonuclease RecJ
2066	 26.07	0	2363749..2364960	-	403	18311048	-	CPE2066	-	peptidase, M16 family
2067	 32.82	+1	2365174..2365755	-	193	18311049	-	CPE2067	-	DJ-1 family protein
2068	 30.68	0	2365761..2368700	-	979	18311050	parC	CPE2068	-	DNA topoisomerase IV subunit A
2069	 31.49	0	2368714..2370666	-	650	18311051	parE	CPE2069	-	DNA topoisomerase IV subunit B
2070	 29.88	0	2370650..2371720	-	356	18311052	-	CPE2070	-	tRNA 2-selenouridine synthase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.