IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
148	 24.78	-1	188513..189202	+	229	18309130	-	CPE0148	-	transcriptional regulator
149	 32.75	+1	189392..190243	+	283	18309131	-	CPE0149	-	D-mannonate oxidoreductase
150	 33.83	+1	190258..190866	+	202	18309132	-	CPE0150	-	2-dehydro-3-deoxyphosphogluconate/4-hydroxy-2-ox oglutarate aldolase
151	 31.43	0	190957..192009	+	350	18309133	uxuA	CPE0151	-	mannonate dehydratase
152	 28.69	0	192029..193429	+	466	18309134	uxaC	CPE0152	-	glucuronate isomerase
153	 30.75	0	193550..194941	+	463	18309135	uidB	CPE0153	-	glucuronide permease
154	 32.71	+1	195005..196774	+	589	18309136	-	CPE0154	-	beta-hexosamidase A
155	 28.36	0	197405..199576	+	723	18309137	-	CPE0155	-	hypothetical protein
156	 29.89	0	199580..201148	+	522	18309138	-	CPE0156	-	putative surface protein
157	 26.59	0	201393..202148	+	251	18309139	-	CPE0157	-	sortase
158	 28.62	0	202217..203128	+	303	18309140	-	CPE0158	-	hypothetical protein
159	 31.82	0	203688..204281	+	197	18309141	-	CPE0159	-	hypothetical protein
160	 32.25	0	204516..205067	+	183	18309142	-	CPE0160	-	hypothetical protein
161	 22.22	-1	205272..206738	-	488	18309143	-	CPE0161	-	hypothetical protein
162	 34.98	+1	207408..208439	+	343	18309144	pfoR	CPE0162	-	regulatory protein
163	 30.74	0	209028..210530	+	500	18309145	pfoA	CPE0163	-	perfringolysin O
164	 27.45	0	210726..211184	+	152	18309146	-	CPE0164	-	hypothetical protein
165	 29.17	0	211256..211423	+	55	18309147	-	CPE0165	-	hypothetical protein
166	 32.06	0	212226..213713	+	495	18309148	-	CPE0166	-	membrane-spanning transporter protein
167	 34.73	+1	213872..215941	+	689	18309149	pbg	CPE0167	-	beta-galactosidase
168	 31.08	0	216493..217734	+	413	18309150	arcA	CPE0168	-	arginine deiminase
169	 32.33	0	217842..218837	+	331	18309151	arcB	CPE0169	-	ornithine carbamoyltransferase
170	 33.33	+1	218982..220418	+	478	18309152	arcD	CPE0170	-	arginine/ornithine antiporter
171	 33.86	+1	220479..221423	+	314	18309153	arcC	CPE0171	-	carbamate kinase
172	 28.73	0	221496..221951	+	151	18309154	argR	CPE0172	-	arginine repressor
173	 29.38	0	222495..225809	+	1104	18309155	colA	CPE0173	-	collagenase
174	 29.41	0	225957..226415	-	152	18309156	mscL	CPE0174	-	large-conductance mechanosensitive channel
175	 31.94	0	227207..227782	+	191	18309157	ycgJ	CPE0175	-	methyltransferase, UbiE/COQ5 family
176	 30.74	0	227846..229000	+	384	18309158	metB	CPE0176	-	cystathionine beta-lyase
177	 30.47	0	228987..229895	+	302	18309159	cysK	CPE0177	-	cysteine synthase family protein
178	 30.48	0	229993..230448	+	151	18309160	luxS	CPE0178	-	S-ribosylhomocysteinase
179	 28.88	0	231156..232166	+	336	18309161	lipA	CPE0179	-	lipase
180	 31.82	0	232388..233179	-	263	18309162	-	CPE0180	-	hypothetical protein
181	 27.59	0	233184..234002	-	272	18309163	-	CPE0181	-	hypothetical protein
182	 29.53	0	234005..235030	-	341	18309164	-	CPE0182	-	ABC transporter ATP-binding protein
183	 29.60	0	235341..236009	+	222	18309165	-	CPE0183	-	nitroreductase family protein
184	 33.03	+1	236295..236960	+	221	18309166	nanP	CPE0184	-	N-acetylmannosamine-6-phosphate 2-epimerase
185	 30.33	0	236997..237863	+	288	18309167	nanA	CPE0185	-	N-acetylneuraminate lyase
186	 32.02	0	237966..239483	+	505	18309168	-	CPE0186	-	hypothetical protein
187	 28.48	0	239593..240045	+	150	18309169	-	CPE0187	-	hypothetical protein
188	 32.21	0	240201..241088	+	295	18309170	-	CPE0188	-	ROK family protein
189	 28.10	0	241279..242118	+	279	18309171	-	CPE0189	-	RpiR family transcriptional regulator
190	 26.67	0	242319..242708	-	129	18309172	-	CPE0190	-	hypothetical protein
191	 31.18	0	242971..247857	+	1628	18309173	nagH	CPE0191	-	hyaluronidase
192	 34.67	+1	248808..249479	+	223	161485644	cbiM	CPE0192	-	cobalt transport protein CbiM
193	 31.73	0	249479..249790	+	103	18309175	cbiN	CPE0193	-	cobalt transport protein CbiN
194	 25.28	-1	249837..250544	+	235	18309176	cbiQ	CPE0194	-	cobalt ABC transporter permease
195	 29.84	0	250559..251416	+	285	18309177	cbiO	CPE0195	-	cobalt transporter ATP-binding subunit
196	 33.46	+1	251886..253466	+	526	18309178	ptiB	CPE0196	-	PTS arbutin-like enzyme IIBC component
197	 25.55	-1	253730..254500	+	256	18309179	-	CPE0197	-	hypothetical protein
198	 24.55	-1	254724..255224	+	166	18309180	-	CPE0198	-	hypothetical protein
199	 30.84	0	255480..256805	+	441	18309181	malH	CPE0199	-	maltose-6'-phosphate glucosidase
200	 22.84	-1	257386..257547	+	53	18309182	-	CPE0200	-	hypothetical protein
201	 29.98	0	257764..258627	-	287	18309183	-	CPE0201	-	5'-nucleotidase, lipoprotein e(P4) family
202	 30.33	0	258849..260048	-	399	18309184	spoIIQ	CPE0202	-	cell wall-binding protein
203	 24.51	-1	260735..261391	+	218	18309185	-	CPE0203	-	hypothetical protein
204	 23.49	-1	267399..268028	+	209	18309186	-	CPE0204	-	acetyltransferase
205	 27.90	0	268495..268770	+	91	18309187	-	CPE0205	-	hypothetical protein
206	 28.69	0	270353..270934	+	193	18309188	-	CPE0206	-	hypothetical protein
207	 24.03	-1	271073..273448	-	791	18309189	-	CPE0207	-	two-component sensor histidine kinase
208	 24.55	-1	273815..274873	+	352	18309190	-	CPE0208	-	hypothetical protein
209	 27.19	0	274974..275201	+	75	18309191	-	CPE0209	-	hypothetical protein
210	 20.98	-2	275341..276222	+	293	18309192	-	CPE0210	-	hypothetical protein
211	 26.83	0	276250..278448	+	732	18309193	-	CPE0211	-	hypothetical protein
212	 23.99	-1	278930..279700	+	256	18309194	-	CPE0212	-	hypothetical protein
213	 30.15	0	279879..280694	-	271	18309195	-	CPE0213	-	hypothetical protein
214	 26.67	0	281268..281912	-	214	18309196	-	CPE0214	-	heme oxygenase
215	 31.05	0	282313..283536	+	407	18309197	sbcD	CPE0215	-	exonuclease
216	 27.55	0	283514..287041	+	1175	18309198	sbcC	CPE0216	-	exonuclease SbcC
217	 30.33	0	287446..288642	+	398	18309199	ackA	CPE0217	-	acetate kinase
218	 25.30	-1	289079..289900	+	273	18309200	-	CPE0218	-	DnaJ-related protein
219	 24.64	-1	290151..290909	-	252	18309201	-	CPE0219	-	AraC family transcriptional regulator
220	 29.88	0	291056..293287	+	743	18309202	-	CPE0220	-	hypothetical protein
221	 29.78	0	293350..293997	+	215	18309203	-	CPE0221	-	putative iron transporter
222	 28.01	0	293999..294562	+	187	18309204	-	CPE0222	-	sortase family protein
223	 30.86	0	294576..295463	+	295	18309205	-	CPE0223	-	ferrichrome ABC transporter
224	 31.71	0	295450..296436	+	328	18309206	-	CPE0224	-	ferrichrome ABC transporter
225	 27.44	0	296437..297216	+	259	18309207	fhuC	CPE0225	-	ferrichrome ABC transporter
226	 28.71	0	297255..298985	+	576	18309208	-	CPE0226	-	ABC transporter
227	 29.48	0	298986..300674	+	562	18309209	-	CPE0227	-	ABC transporter
228	 25.76	0	300661..301056	+	131	18309210	-	CPE0228	-	hypothetical protein
229	 26.33	0	301037..301336	+	99	18309211	-	CPE0229	-	hypothetical protein
230	 29.03	0	301463..301648	+	61	18309212	-	CPE0230	-	iron-sulfur cluster-binding protein
231	 31.74	0	301943..303388	+	481	18309213	-	CPE0231	-	arylsulfatase
232	 33.11	+1	303546..304883	-	445	18309214	glpT	CPE0232	-	glycerol-3-phosphate transporter
233	 30.10	0	305084..306103	-	339	18309215	-	CPE0233	-	iron(III) ABC transporter
234	 24.33	-1	306084..306872	-	262	18309216	-	CPE0234	-	hypothetical protein
235	 26.00	0	306865..308295	-	476	18309217	-	CPE0235	-	sensor histidine kinase
236	 26.34	0	308285..308956	-	223	18309218	-	CPE0236	-	DNA-binding response regulator
237	 29.42	0	309248..310447	+	399	18309219	napA	CPE0237	-	Na+/H+ antiporter
238	 25.19	-1	310700..311227	+	175	18309220	-	CPE0238	-	hypothetical protein
239	 27.16	0	311601..312377	+	258	18309221	-	CPE0239	-	hypothetical protein
240	 27.46	0	312795..314225	+	476	18309222	-	CPE0240	-	hypothetical protein
241	 29.87	0	314228..314920	+	230	18309223	-	CPE0241	-	hypothetical protein
242	 23.36	-1	315018..315338	-	106	18309224	-	CPE0242	-	immunity protein
243	 26.91	0	315473..315721	+	82	18309225	-	CPE0243	-	hypothetical protein
244	 21.24	-2	315728..316504	+	258	18309226	-	CPE0244	-	hypothetical protein
245	 24.48	-1	316595..318922	-	775	18309227	-	CPE0245	-	GGDEF/EAL domain protein
246	 24.27	-1	319177..320445	+	422	18309228	-	CPE0246	-	dnaJ domain protein
247	 27.69	0	320463..321065	+	200	18309229	grpE	CPE0247	-	GrpE protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.