IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1720	 31.60	0	1998534..1999166	-	210	18310702	plsX	CPE1720	-	putative glycerol-3-phosphate acyltransferase PlsX
1721	 33.61	+1	1999139..1999504	-	121	18310703	plsX	CPE1721	-	fatty acid/phospholipid synthesis protein
1722	 37.70	+2	1999613..1999795	-	60	18310704	rpmF	CPE1722	-	50S ribosomal protein L32
1723	 32.07	0	1999811..2000206	-	131	18310705	-	CPE1723	-	hypothetical protein
1724	 31.91	0	2000425..2001621	-	398	18310706	ackB	CPE1724	-	acetate kinase
1725	 35.22	+1	2001712..2002719	-	335	18310707	eutD	CPE1725	-	phosphotransacetylase
1726	 26.98	0	2003056..2004156	+	366	18310708	-	CPE1726	-	hypothetical protein
1727	 26.01	0	2004221..2005381	+	386	18310709	-	CPE1727	-	hypothetical protein
1728	 30.32	0	2005364..2005894	-	176	18310710	-	CPE1728	-	hypothetical protein
1729	 31.11	0	2005903..2006397	-	164	18310711	coaD	CPE1729	-	pantetheine-phosphate adenylyltransferase
1730	 31.00	0	2006399..2006956	-	185	18310712	-	CPE1730	-	hypothetical protein
1731	 28.32	0	2007021..2009093	-	690	18310713	recG	CPE1731	-	ATP-dependent DNA helicase RecG
1732	 33.27	+1	2009246..2010892	-	548	18310714	-	CPE1732	-	DAK2 domain protein
1733	 30.17	0	2010906..2011253	-	115	18310715	-	CPE1733	-	hypothetical protein
1734	 34.12	+1	2011513..2011767	+	84	18310716	rpmB	CPE1734	-	50S ribosomal protein L28
1735	 28.10	0	2011946..2012575	-	209	18310717	-	CPE1735	-	thiamine pyrophosphokinase
1736	 31.50	0	2012577..2013230	-	217	18310718	-	CPE1736	-	ribulose-phosphate 3-epimerase
1737	 29.40	0	2013230..2014093	-	287	18310719	-	CPE1737	-	ribosome-associated GTPase
1738	 32.51	0	2014330..2016387	-	685	18310720	-	CPE1738	-	pobable serine/threonine protein kinase
1739	 30.28	0	2016389..2017108	-	239	18310721	-	CPE1739	-	protein phosphatase 2C family protein
1740	 30.08	0	2017121..2018164	-	347	18310722	-	CPE1740	-	radical SAM enzyme, Cfr family
1741	 27.69	0	2018196..2019524	-	442	18310723	-	CPE1741	-	RNA-binding Sun protein
1742	 31.47	0	2019535..2020230	-	231	18310724	-	CPE1742	-	hypothetical protein
1743	 31.18	0	2020248..2021177	-	309	18310725	fmt	CPE1743	-	methionyl-tRNA formyltransferase
1744	 31.08	0	2021197..2021640	-	147	18310726	def	CPE1744	-	polypeptide deformylase
1745	 27.64	0	2021654..2023849	-	731	18310727	-	CPE1745	-	primosome assembly protein PriA
1746	 32.74	+1	2023888..2025075	-	395	18310728	-	CPE1746	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1747	 29.11	0	2025081..2025293	-	70	18310729	rpoZ	CPE1747	-	DNA-directed RNA polymerase subunit omega
1748	 29.85	0	2025274..2025933	-	219	18310730	gmk	CPE1748	-	guanylate kinase
1749	 33.33	+1	2025914..2026183	-	89	18310731	-	CPE1749	-	hypothetical protein
1750	 28.81	0	2026197..2027081	-	294	18310732	-	CPE1750	-	hypothetical protein
1751	 31.40	0	2027301..2028698	-	465	18310733	-	CPE1751	-	hypothetical protein
1752	 32.52	0	2028956..2029939	-	327	18310734	ansA	CPE1752	-	L-asparaginase
1753	 31.03	0	2030290..2031765	-	491	18310735	spoIVA	CPE1753	-	stage IV sporulation protein A
1754	 33.13	+1	2032094..2033089	-	331	18310736	gpsA	CPE1754	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1755	 30.98	0	2033094..2034410	-	438	18310737	engA	CPE1755	-	GTP-binding protein EngA
1756	 30.57	0	2034413..2035750	-	445	18310738	-	CPE1756	-	hypothetical protein
1757	 27.21	0	2036077..2037792	-	571	18310739	-	CPE1757	-	sensory box histidine kinase
1758	 28.51	0	2037806..2038510	-	234	18310740	-	CPE1758	-	hypothetical protein
1759	 28.89	0	2038676..2039125	-	149	18310741	-	CPE1759	-	transcriptional regulator NrdR
1760	 27.11	0	2039187..2039459	-	90	18310742	-	CPE1760	-	hypothetical protein
1761	 30.14	0	2039600..2040412	-	270	18310743	sigG	CPE1761	-	sporulation sigma factor SigG
1762	 28.53	0	2040448..2041155	-	235	18310744	sigE	CPE1762	-	sporulation sigma factor SigE
1763	 25.53	-1	2041169..2041975	-	268	18310745	spoIIGA	CPE1763	-	sporulation factor SpoIIGA
1764	 15.90	-2	2042013..2042207	-	64	18310746	-	CPE1764	-	hypothetical protein
1765	 34.12	+1	2042380..2043525	-	381	18310747	ftsZ	CPE1765	-	cell division protein FtsZ
1766	 26.80	0	2043539..2044777	-	412	18310748	ftsA	CPE1766	-	cell division protein FtsA
1767	 31.34	0	2044855..2045907	-	350	18310749	pilT	CPE1767	-	twitching motility protein PilT
1768	 29.49	0	2046088..2046789	-	233	18310750	sigK	CPE1768	-	sporulation sigma factor SigK
1769	 28.90	0	2046852..2048519	-	555	18310751	spoVD	CPE1769	-	stage V sporulation protein D
1770	 29.82	0	2048632..2049258	-	208	18310752	-	CPE1770	-	uridine kinase
1771	 32.03	0	2049258..2050487	-	409	18310753	-	CPE1771	-	peptidase, U32 family
1772	 29.61	0	2050493..2051137	-	214	18310754	-	CPE1772	-	O-methyltransferase family protein
1773	 30.42	0	2051153..2052181	-	342	18310755	-	CPE1773	-	hypothetical protein
1774	 32.19	0	2052324..2054156	-	610	18310756	typA	CPE1774	-	GTP-binding protein TypA
1775	 32.93	+1	2054313..2056058	-	581	18310757	-	CPE1775	-	hypothetical protein
1776	 32.45	0	2056051..2056503	-	150	18310758	-	CPE1776	-	FUR family transcriptional regulator
1777	 31.76	0	2056524..2056778	-	84	18310759	-	CPE1777	-	hypothetical protein
1778	 33.57	+1	2056794..2057207	-	137	18310760	-	CPE1778	-	Holliday junction resolvase-like protein
1779	 31.01	0	2057255..2057512	-	85	18310761	-	CPE1779	-	hypothetical protein
1780	 31.59	0	2057656..2060295	-	879	18310762	alaS	CPE1780	-	alanyl-tRNA synthetase
1781	 25.43	-1	2060888..2061925	-	345	18310763	-	CPE1781	-	hypothetical protein
1782	 25.95	0	2061951..2062424	-	157	18310764	-	CPE1782	-	PRC-barrel domain protein
1783	 33.52	+1	2062713..2063765	-	350	18310765	trmU	CPE1783	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1784	 34.50	+1	2063817..2064245	-	142	18310766	nifU	CPE1784	-	nitrogen fixation protein
1785	 32.58	0	2064248..2065444	-	398	18310767	nifS	CPE1785	-	cysteine desulfurase
1786	 27.39	0	2065437..2065823	-	128	18310768	-	CPE1786	-	hypothetical protein
1787	 30.32	0	2066029..2067255	-	408	18310769	-	CPE1787	-	recombination factor protein RarA
1788	 26.00	0	2067478..2068377	-	299	18310770	-	CPE1788	-	hypothetical protein
1789	 35.43	+1	2068563..2068991	-	142	18310771	-	CPE1789	-	hypothetical protein
1790	 27.16	0	2068994..2069965	-	323	18310772	moaA	CPE1790	-	molybdenum cofactor biosynthesis protein A
1791	 31.16	0	2070069..2071082	-	337	18310773	-	CPE1791	-	molybdopterin biosynthesis protein
1792	 23.32	-1	2071201..2071749	-	182	18310774	-	CPE1792	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1793	 30.22	0	2071842..2073062	-	406	18310775	-	CPE1793	-	molybdenum cofactor biosynthesis protein MoeA
1794	 31.88	0	2073401..2073883	-	160	18310776	mobB	CPE1794	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1795	 30.88	0	2073974..2075197	-	407	18310777	-	CPE1795	-	nitrate reductase, NADH oxidase subunit
1796	 33.57	+1	2075199..2075612	-	137	18310778	-	CPE1796	-	nitrate reductase electron transfer subunit
1797	 31.79	0	2075625..2077703	-	692	18310779	-	CPE1797	-	nitrate reductase, catalytic subunit
1798	 22.38	-1	2077990..2078418	-	142	18310780	-	CPE1798	-	hypothetical protein
1799	 33.49	+1	2078639..2079916	-	425	18310781	-	CPE1799	-	putative FAD dependent oxidoreductase
1800	 30.99	0	2079948..2080928	-	326	18310782	-	CPE1800	-	hypothetical protein
1801	 32.31	0	2081174..2082049	-	291	18310783	dacB	CPE1801	-	D-alanyl-D-alanine carboxypeptidase
1802	 19.55	-2	2082197..2082769	+	190	18310784	-	CPE1802	-	hypothetical protein
1803	 32.86	+1	2082816..2083235	+	139	18310785	-	CPE1803	-	hypothetical protein
1804	 28.40	0	2083564..2084151	-	195	18310786	scpB	CPE1804	-	segregation and condensation protein B
1805	 27.44	0	2084144..2084890	-	248	18310787	scpA	CPE1805	-	segregation and condensation protein A
1806	 31.51	0	2085161..2086369	-	402	18310788	dacF	CPE1806	-	serine-type D-Ala-D-Ala carboxypeptidase
1807	 32.03	0	2086621..2087922	-	433	18310789	deoA	CPE1807	-	pyrimidine-nucleoside phosphorylase
1808	 28.98	0	2088169..2089041	-	290	18310790	-	CPE1808	-	tyrosine recombinase XerD
1809	 26.73	0	2089091..2089711	-	206	18310791	spoIIM	CPE1809	-	stage II sporulation protein M
1810	 28.81	0	2089979..2090509	-	176	18310792	-	CPE1810	-	hypothetical protein
1811	 23.53	-1	2090571..2090876	-	101	18310793	-	CPE1811	-	hypothetical protein
1812	 30.79	0	2090953..2091306	-	117	18310794	spo0A	CPE1812	-	phosphorylation-activated transcription factor
1813	 29.36	0	2091331..2091783	-	150	18310795	-	CPE1813	-	phosphorylation-activated transcription factor
1814	 28.77	0	2091957..2093117	-	386	18310796	-	CPE1814	-	stage IV sporulation protein B
1815	 27.09	0	2093294..2094991	-	565	18310797	recN	CPE1815	-	DNA repair protein RecN
1816	 30.91	0	2095007..2095459	-	150	18310798	argR	CPE1816	-	arginine repressor
1817	 28.40	0	2095482..2096312	-	276	18310799	-	CPE1817	-	NAD(+)/NADH kinase
1818	 31.74	0	2096397..2097212	-	271	18310800	hlyD	CPE1818	-	hemolysin A
1819	 29.68	0	2097224..2099083	-	619	18310801	-	CPE1819	-	1-deoxy-D-xylulose-5-phosphate synthase
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.