IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1681	 32.20	0	1958398..1958661	-	87	18310663	rpsO	CPE1681	-	30S ribosomal protein S15
1682	 26.77	0	1958777..1959706	-	309	18310664	ribC	CPE1682	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1683	 28.93	0	1959710..1960594	-	294	18310665	truB	CPE1683	-	tRNA pseudouridine synthase B
1684	 29.87	0	1960598..1961551	-	317	18310666	-	CPE1684	-	DHH subfamily 1 protein
1685	 29.91	0	1961555..1961905	-	116	18310667	rbfA	CPE1685	-	ribosome-binding factor A
1686	 34.12	+1	1961927..1963966	-	679	18310668	infB	CPE1686	-	translation initiation factor IF-2
1687	 26.40	0	1963997..1964299	-	100	18310669	-	CPE1687	-	hypothetical protein
1688	 29.96	0	1964292..1964558	-	88	18310670	-	CPE1688	-	hypothetical protein
1689	 29.97	0	1964586..1965686	-	366	18310671	nusA	CPE1689	-	transcription elongation factor NusA
1690	 28.17	0	1965706..1966170	-	154	18310672	-	CPE1690	-	hypothetical protein
1691	 31.45	0	1966403..1970752	-	1449	18310673	polC	CPE1691	-	DNA polymerase III PolC
1692	 31.71	0	1970830..1971879	-	349	18310674	ispG	CPE1692	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1693	 32.54	0	1971899..1972906	-	335	18310675	-	CPE1693	-	hypothetical protein
1694	 29.18	0	1972918..1974072	-	384	18310676	-	CPE1694	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1695	 27.30	0	1974432..1975226	-	264	18310677	cdsA	CPE1695	-	phosphatidate cytidylyltransferase
1696	 30.05	0	1975244..1976005	-	253	18310678	uppS	CPE1696	-	undecaprenyl diphosphate synthase
1697	 28.32	0	1976070..1976627	-	185	18310679	frr	CPE1697	-	ribosome recycling factor
1698	 34.73	+1	1976641..1977354	-	237	18310680	pyrH	CPE1698	-	uridylate kinase
1699	 35.64	+1	1977447..1978358	-	303	18310681	tsf	CPE1699	-	elongation factor Ts
1700	 33.76	+1	1978438..1979139	-	233	18310682	rpsB	CPE1700	-	30S ribosomal protein S2
1701	 29.34	0	1979521..1980297	-	258	18310683	-	CPE1701	-	transcriptional repressor CodY
1702	 30.58	0	1980439..1982541	-	700	18310684	topA	CPE1702	-	DNA topoisomerase I
1703	 27.61	0	1982586..1983668	-	360	18310685	smf	CPE1703	-	DNA protecting protein DprA
1704	 29.92	0	1983669..1985192	-	507	18310686	comM	CPE1704	-	Mg chelatase-like protein
1705	 24.93	-1	1985322..1985690	+	122	18310687	-	CPE1705	-	hypothetical protein
1706	 27.23	0	1985691..1986509	-	272	18310688	rnhB	CPE1706	-	ribonuclease HII
1707	 30.26	0	1986525..1987370	-	281	18310689	rbgA	CPE1707	-	ribosomal biogenesis GTPase
1708	 33.05	+1	1987517..1987864	-	115	18310690	rplS	CPE1708	-	50S ribosomal protein L19
1709	 31.08	0	1987985..1988695	-	236	18310691	trmD	CPE1709	-	tRNA (guanine-N(1)-)-methyltransferase
1710	 28.92	0	1988685..1989182	-	165	18310692	rimM	CPE1710	-	16S rRNA-processing protein
1711	 32.46	0	1989238..1989465	-	75	18310693	-	CPE1711	-	hypothetical protein
1712	 38.21	+2	1989509..1989754	-	81	18310694	rpsP	CPE1712	-	30S ribosomal protein S16
1713	 32.52	0	1989788..1991146	-	452	18310695	ffh	CPE1713	-	signal recognition particle protein
1714	 25.96	0	1991158..1991496	-	112	18310696	-	CPE1714	-	hypothetical protein
1715	 31.04	0	1991673..1992587	-	304	18310697	ftsY	CPE1715	-	signal recognition particle-docking protein FtsY
1716	 26.81	0	1992601..1996158	-	1185	18310698	smc	CPE1716	-	chromosome segregation protein SMC
1717	 29.24	0	1996363..1997436	-	357	18310699	-	CPE1717	-	radical SAM domain protein
1718	 27.45	0	1997415..1998128	-	237	18310700	rnc	CPE1718	-	ribonuclease III
1719	 32.47	0	1998227..1998457	-	76	18310701	acpA	CPE1719	-	acyl carrier protein
1720	 31.60	0	1998534..1999166	-	210	18310702	plsX	CPE1720	-	putative glycerol-3-phosphate acyltransferase PlsX
1721	 33.61	+1	1999139..1999504	-	121	18310703	plsX	CPE1721	-	fatty acid/phospholipid synthesis protein
1722	 37.70	+2	1999613..1999795	-	60	18310704	rpmF	CPE1722	-	50S ribosomal protein L32
1723	 32.07	0	1999811..2000206	-	131	18310705	-	CPE1723	-	hypothetical protein
1724	 31.91	0	2000425..2001621	-	398	18310706	ackB	CPE1724	-	acetate kinase
1725	 35.22	+1	2001712..2002719	-	335	18310707	eutD	CPE1725	-	phosphotransacetylase
1726	 26.98	0	2003056..2004156	+	366	18310708	-	CPE1726	-	hypothetical protein
1727	 26.01	0	2004221..2005381	+	386	18310709	-	CPE1727	-	hypothetical protein
1728	 30.32	0	2005364..2005894	-	176	18310710	-	CPE1728	-	hypothetical protein
1729	 31.11	0	2005903..2006397	-	164	18310711	coaD	CPE1729	-	pantetheine-phosphate adenylyltransferase
1730	 31.00	0	2006399..2006956	-	185	18310712	-	CPE1730	-	hypothetical protein
1731	 28.32	0	2007021..2009093	-	690	18310713	recG	CPE1731	-	ATP-dependent DNA helicase RecG
1732	 33.27	+1	2009246..2010892	-	548	18310714	-	CPE1732	-	DAK2 domain protein
1733	 30.17	0	2010906..2011253	-	115	18310715	-	CPE1733	-	hypothetical protein
1734	 34.12	+1	2011513..2011767	+	84	18310716	rpmB	CPE1734	-	50S ribosomal protein L28
1735	 28.10	0	2011946..2012575	-	209	18310717	-	CPE1735	-	thiamine pyrophosphokinase
1736	 31.50	0	2012577..2013230	-	217	18310718	-	CPE1736	-	ribulose-phosphate 3-epimerase
1737	 29.40	0	2013230..2014093	-	287	18310719	-	CPE1737	-	ribosome-associated GTPase
1738	 32.51	0	2014330..2016387	-	685	18310720	-	CPE1738	-	pobable serine/threonine protein kinase
1739	 30.28	0	2016389..2017108	-	239	18310721	-	CPE1739	-	protein phosphatase 2C family protein
1740	 30.08	0	2017121..2018164	-	347	18310722	-	CPE1740	-	radical SAM enzyme, Cfr family
1741	 27.69	0	2018196..2019524	-	442	18310723	-	CPE1741	-	RNA-binding Sun protein
1742	 31.47	0	2019535..2020230	-	231	18310724	-	CPE1742	-	hypothetical protein
1743	 31.18	0	2020248..2021177	-	309	18310725	fmt	CPE1743	-	methionyl-tRNA formyltransferase
1744	 31.08	0	2021197..2021640	-	147	18310726	def	CPE1744	-	polypeptide deformylase
1745	 27.64	0	2021654..2023849	-	731	18310727	-	CPE1745	-	primosome assembly protein PriA
1746	 32.74	+1	2023888..2025075	-	395	18310728	-	CPE1746	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1747	 29.11	0	2025081..2025293	-	70	18310729	rpoZ	CPE1747	-	DNA-directed RNA polymerase subunit omega
1748	 29.85	0	2025274..2025933	-	219	18310730	gmk	CPE1748	-	guanylate kinase
1749	 33.33	+1	2025914..2026183	-	89	18310731	-	CPE1749	-	hypothetical protein
1750	 28.81	0	2026197..2027081	-	294	18310732	-	CPE1750	-	hypothetical protein
1751	 31.40	0	2027301..2028698	-	465	18310733	-	CPE1751	-	hypothetical protein
1752	 32.52	0	2028956..2029939	-	327	18310734	ansA	CPE1752	-	L-asparaginase
1753	 31.03	0	2030290..2031765	-	491	18310735	spoIVA	CPE1753	-	stage IV sporulation protein A
1754	 33.13	+1	2032094..2033089	-	331	18310736	gpsA	CPE1754	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1755	 30.98	0	2033094..2034410	-	438	18310737	engA	CPE1755	-	GTP-binding protein EngA
1756	 30.57	0	2034413..2035750	-	445	18310738	-	CPE1756	-	hypothetical protein
1757	 27.21	0	2036077..2037792	-	571	18310739	-	CPE1757	-	sensory box histidine kinase
1758	 28.51	0	2037806..2038510	-	234	18310740	-	CPE1758	-	hypothetical protein
1759	 28.89	0	2038676..2039125	-	149	18310741	-	CPE1759	-	transcriptional regulator NrdR
1760	 27.11	0	2039187..2039459	-	90	18310742	-	CPE1760	-	hypothetical protein
1761	 30.14	0	2039600..2040412	-	270	18310743	sigG	CPE1761	-	sporulation sigma factor SigG
1762	 28.53	0	2040448..2041155	-	235	18310744	sigE	CPE1762	-	sporulation sigma factor SigE
1763	 25.53	-1	2041169..2041975	-	268	18310745	spoIIGA	CPE1763	-	sporulation factor SpoIIGA
1764	 15.90	-2	2042013..2042207	-	64	18310746	-	CPE1764	-	hypothetical protein
1765	 34.12	+1	2042380..2043525	-	381	18310747	ftsZ	CPE1765	-	cell division protein FtsZ
1766	 26.80	0	2043539..2044777	-	412	18310748	ftsA	CPE1766	-	cell division protein FtsA
1767	 31.34	0	2044855..2045907	-	350	18310749	pilT	CPE1767	-	twitching motility protein PilT
1768	 29.49	0	2046088..2046789	-	233	18310750	sigK	CPE1768	-	sporulation sigma factor SigK
1769	 28.90	0	2046852..2048519	-	555	18310751	spoVD	CPE1769	-	stage V sporulation protein D
1770	 29.82	0	2048632..2049258	-	208	18310752	-	CPE1770	-	uridine kinase
1771	 32.03	0	2049258..2050487	-	409	18310753	-	CPE1771	-	peptidase, U32 family
1772	 29.61	0	2050493..2051137	-	214	18310754	-	CPE1772	-	O-methyltransferase family protein
1773	 30.42	0	2051153..2052181	-	342	18310755	-	CPE1773	-	hypothetical protein
1774	 32.19	0	2052324..2054156	-	610	18310756	typA	CPE1774	-	GTP-binding protein TypA
1775	 32.93	+1	2054313..2056058	-	581	18310757	-	CPE1775	-	hypothetical protein
1776	 32.45	0	2056051..2056503	-	150	18310758	-	CPE1776	-	FUR family transcriptional regulator
1777	 31.76	0	2056524..2056778	-	84	18310759	-	CPE1777	-	hypothetical protein
1778	 33.57	+1	2056794..2057207	-	137	18310760	-	CPE1778	-	Holliday junction resolvase-like protein
1779	 31.01	0	2057255..2057512	-	85	18310761	-	CPE1779	-	hypothetical protein
1780	 31.59	0	2057656..2060295	-	879	18310762	alaS	CPE1780	-	alanyl-tRNA synthetase
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.