IslandPathversion 1.0

IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.13 STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1628	 32.78	+1	1901337..1901876	-	179	18310610	-	CPE1628	-	ribose ABC transporter
1629	 31.09	0	1901898..1902833	-	311	18310611	rbsC	CPE1629	-	ribose ABC transporter
1630	 30.35	0	1902847..1904352	-	501	18310612	rbsA	CPE1630	-	ribose ABC transporter
1631	 29.04	0	1904439..1904834	-	131	18310613	rbsD	CPE1631	-	D-ribose pyranase
1632	 29.47	0	1904837..1905769	-	310	18310614	rbsK	CPE1632	-	ribokinase
1633	 30.56	0	1905910..1906377	-	155	18310615	def	CPE1633	-	polypeptide deformylase
1634	 30.73	0	1906533..1907492	-	319	18310616	tagO	CPE1634	-	undecaprenyl-phosphate N-acetylglucosaminyltransferase
1635	 27.87	0	1907638..1908204	-	188	18310617	-	CPE1635	-	transcriptional regulator
1636	 32.40	0	1908420..1909064	-	214	18310618	ntpD	CPE1636	-	V-type ATP synthase subunit D
1637	 35.79	+1	1909067..1910449	-	460	18310619	ntpB	CPE1637	-	V-type ATP synthase subunit B
1638	 37.73	+2	1910442..1912217	-	591	18310620	ntpA	CPE1638	-	V-type ATP synthase subunit A
1639	 32.70	+1	1912234..1912551	-	105	18310621	ntpF	CPE1639	-	V-type ATP synthase subunit F
1640	 27.88	0	1912538..1913545	-	335	18310622	ntpC	CPE1640	-	V-type ATP synthase subunit C
1641	 26.13	0	1913558..1914154	-	198	18310623	ntpE	CPE1641	-	V-type ATPase, E subunit
1642	 35.35	+1	1914185..1914679	-	164	18310624	ntpK	CPE1642	-	V-type ATP synthase subunit K
1643	 32.20	0	1914734..1916680	-	648	18310625	ntpI	CPE1643	-	V-type ATP synthase subunit I
1644	 32.72	+1	1916667..1916993	-	108	18310626	-	CPE1644	-	hypothetical protein
1645	 28.04	0	1917270..1918949	-	559	18310627	-	CPE1645	-	radical SAM domain protein
1646	 26.53	0	1918849..1919451	-	200	18310628	-	CPE1646	-	hypothetical protein
1647	 25.80	0	1919598..1920884	-	428	18310629	-	CPE1647	-	hypothetical protein
1648	 27.25	0	1921032..1922561	+	509	18310630	spoVB	CPE1648	-	stage V sporulation protein B
1649	 26.34	0	1922655..1923455	-	266	18310631	-	CPE1649	-	hypothetical protein
1650	 28.35	0	1923565..1924407	-	280	18310632	-	CPE1650	-	hypothetical protein
1651	 32.34	0	1924419..1924922	-	167	18310633	-	CPE1651	-	hypothetical protein
1652	 26.75	0	1925171..1926172	+	333	18310634	-	CPE1652	-	hypothetical protein
1653	 27.07	0	1926200..1926550	-	116	18310635	-	CPE1653	-	hypothetical protein
1654	 28.66	0	1926770..1927240	+	156	18310636	-	CPE1654	-	AsnC family transcriptional regulator
1655	 27.94	0	1927347..1927550	+	67	18310637	-	CPE1655	-	hypothetical protein
1656	 29.61	0	1927598..1929343	-	581	18310638	-	CPE1656	-	hypothetical protein
1657	 28.65	0	1929544..1930398	+	284	18310639	comEC	CPE1657	-	late competence protein
1658	 26.17	0	1930455..1931138	-	227	18310640	-	CPE1658	-	hypothetical protein
1659	 30.59	0	1931324..1931542	+	72	18310641	feoA	CPE1659	-	ferrous iron transport protein A
1660	 30.95	0	1931580..1933343	+	587	18310642	feoB	CPE1660	-	ferrous iron transport protein B
1661	 30.80	0	1933553..1935250	-	565	18310643	argS	CPE1661	-	arginyl-tRNA synthetase
1662	 27.97	0	1935732..1937240	+	502	18310644	-	CPE1662	-	Ppx/GppA phosphatase family protein
1663	 29.71	0	1937338..1938552	-	404	18310645	-	CPE1663	-	hypothetical protein
1664	 28.02	0	1938718..1939338	-	206	18310646	-	CPE1664	-	peptidase, M50 family
1665	 30.43	0	1939543..1940922	-	459	18310647	-	CPE1665	-	PhoH family protein
1666	 27.64	0	1941144..1941758	+	204	18310648	-	CPE1666	-	hypothetical protein
1667	 26.97	0	1941795..1942124	-	109	18310649	-	CPE1667	-	single-strand binding protein
1668	 30.82	0	1942405..1943835	-	476	18310650	purB	CPE1668	-	adenylosuccinate lyase
1669	 31.80	0	1944078..1944338	-	86	18310651	hpr	CPE1669	-	phosphocarrier protein
1670	 30.07	0	1944433..1945626	-	397	18310652	aspC	CPE1670	-	aspartate aminotransferase
1671	 36.78	+2	1945779..1946039	-	86	18310653	spoVS	CPE1671	-	stage V sporulation protein S
1672	 34.34	+1	1946257..1947849	-	530	18310654	-	CPE1672	-	phosphodiesterase
1673	 34.56	+1	1948140..1949198	-	352	18310655	recA	CPE1673	-	recombinase A
1674	 29.95	0	1949334..1949924	-	196	18310656	-	CPE1674	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1675	 29.30	0	1949908..1951245	-	445	18310657	-	CPE1675	-	hypothetical protein
1676	 31.03	0	1951314..1953704	-	796	18310658	spoIIIE	CPE1676	-	DNA translocase FtsK
1677	 30.78	0	1953836..1954579	-	247	18310659	-	CPE1677	-	Clp protease
1678	 30.91	0	1954579..1955775	-	398	18310660	dapG	CPE1678	-	aspartate kinase I
1679	 26.09	0	1955789..1956064	-	91	18310661	-	CPE1679	-	PRC-barrel domain protein
1680	 33.52	+1	1956198..1958306	-	702	18310662	pnpA	CPE1680	-	polynucleotide phosphorylase/polyadenylase
1681	 32.20	0	1958398..1958661	-	87	18310663	rpsO	CPE1681	-	30S ribosomal protein S15
1682	 26.77	0	1958777..1959706	-	309	18310664	ribC	CPE1682	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1683	 28.93	0	1959710..1960594	-	294	18310665	truB	CPE1683	-	tRNA pseudouridine synthase B
1684	 29.87	0	1960598..1961551	-	317	18310666	-	CPE1684	-	DHH subfamily 1 protein
1685	 29.91	0	1961555..1961905	-	116	18310667	rbfA	CPE1685	-	ribosome-binding factor A
1686	 34.12	+1	1961927..1963966	-	679	18310668	infB	CPE1686	-	translation initiation factor IF-2
1687	 26.40	0	1963997..1964299	-	100	18310669	-	CPE1687	-	hypothetical protein
1688	 29.96	0	1964292..1964558	-	88	18310670	-	CPE1688	-	hypothetical protein
1689	 29.97	0	1964586..1965686	-	366	18310671	nusA	CPE1689	-	transcription elongation factor NusA
1690	 28.17	0	1965706..1966170	-	154	18310672	-	CPE1690	-	hypothetical protein
1691	 31.45	0	1966403..1970752	-	1449	18310673	polC	CPE1691	-	DNA polymerase III PolC
1692	 31.71	0	1970830..1971879	-	349	18310674	ispG	CPE1692	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1693	 32.54	0	1971899..1972906	-	335	18310675	-	CPE1693	-	hypothetical protein
1694	 29.18	0	1972918..1974072	-	384	18310676	-	CPE1694	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1695	 27.30	0	1974432..1975226	-	264	18310677	cdsA	CPE1695	-	phosphatidate cytidylyltransferase
1696	 30.05	0	1975244..1976005	-	253	18310678	uppS	CPE1696	-	undecaprenyl diphosphate synthase
1697	 28.32	0	1976070..1976627	-	185	18310679	frr	CPE1697	-	ribosome recycling factor
1698	 34.73	+1	1976641..1977354	-	237	18310680	pyrH	CPE1698	-	uridylate kinase
1699	 35.64	+1	1977447..1978358	-	303	18310681	tsf	CPE1699	-	elongation factor Ts
1700	 33.76	+1	1978438..1979139	-	233	18310682	rpsB	CPE1700	-	30S ribosomal protein S2
1701	 29.34	0	1979521..1980297	-	258	18310683	-	CPE1701	-	transcriptional repressor CodY
1702	 30.58	0	1980439..1982541	-	700	18310684	topA	CPE1702	-	DNA topoisomerase I
1703	 27.61	0	1982586..1983668	-	360	18310685	smf	CPE1703	-	DNA protecting protein DprA
1704	 29.92	0	1983669..1985192	-	507	18310686	comM	CPE1704	-	Mg chelatase-like protein
1705	 24.93	-1	1985322..1985690	+	122	18310687	-	CPE1705	-	hypothetical protein
1706	 27.23	0	1985691..1986509	-	272	18310688	rnhB	CPE1706	-	ribonuclease HII
1707	 30.26	0	1986525..1987370	-	281	18310689	rbgA	CPE1707	-	ribosomal biogenesis GTPase
1708	 33.05	+1	1987517..1987864	-	115	18310690	rplS	CPE1708	-	50S ribosomal protein L19
1709	 31.08	0	1987985..1988695	-	236	18310691	trmD	CPE1709	-	tRNA (guanine-N(1)-)-methyltransferase
1710	 28.92	0	1988685..1989182	-	165	18310692	rimM	CPE1710	-	16S rRNA-processing protein
1711	 32.46	0	1989238..1989465	-	75	18310693	-	CPE1711	-	hypothetical protein
1712	 38.21	+2	1989509..1989754	-	81	18310694	rpsP	CPE1712	-	30S ribosomal protein S16
1713	 32.52	0	1989788..1991146	-	452	18310695	ffh	CPE1713	-	signal recognition particle protein
1714	 25.96	0	1991158..1991496	-	112	18310696	-	CPE1714	-	hypothetical protein
1715	 31.04	0	1991673..1992587	-	304	18310697	ftsY	CPE1715	-	signal recognition particle-docking protein FtsY
1716	 26.81	0	1992601..1996158	-	1185	18310698	smc	CPE1716	-	chromosome segregation protein SMC
1717	 29.24	0	1996363..1997436	-	357	18310699	-	CPE1717	-	radical SAM domain protein
1718	 27.45	0	1997415..1998128	-	237	18310700	rnc	CPE1718	-	ribonuclease III
1719	 32.47	0	1998227..1998457	-	76	18310701	acpA	CPE1719	-	acyl carrier protein
1720	 31.60	0	1998534..1999166	-	210	18310702	plsX	CPE1720	-	putative glycerol-3-phosphate acyltransferase PlsX
1721	 33.61	+1	1999139..1999504	-	121	18310703	plsX	CPE1721	-	fatty acid/phospholipid synthesis protein
1722	 37.70	+2	1999613..1999795	-	60	18310704	rpmF	CPE1722	-	50S ribosomal protein L32
1723	 32.07	0	1999811..2000206	-	131	18310705	-	CPE1723	-	hypothetical protein
1724	 31.91	0	2000425..2001621	-	398	18310706	ackB	CPE1724	-	acetate kinase
1725	 35.22	+1	2001712..2002719	-	335	18310707	eutD	CPE1725	-	phosphotransacetylase
1726	 26.98	0	2003056..2004156	+	366	18310708	-	CPE1726	-	hypothetical protein
1727	 26.01	0	2004221..2005381	+	386	18310709	-	CPE1727	-	hypothetical protein
29.13	MEAN

3.46	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.