IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
119	 29.22	0	159434..160114	+	226	18309101	-	CPE0119	-	two-component response regulator
120	 26.92	0	160111..161124	+	337	18309102	-	CPE0120	-	two-component sensor histidine kinase
121	 15.66	-2	161176..161373	+	65	18309103	-	CPE0121	-	hypothetical protein
122	 30.22	0	161923..162693	+	256	18309104	-	CPE0122	-	ABC transporter
123	 27.37	0	162683..164662	+	659	18309105	-	CPE0123	-	ABC transporter
124	 17.54	-2	164831..165400	-	189	18309106	-	CPE0124	-	hypothetical protein
125	 23.94	-1	165492..165704	+	70	18309107	-	CPE0125	-	hypothetical protein
126	 20.49	-2	165999..166325	+	108	18309108	-	CPE0126	-	hypothetical protein
127	 26.15	0	166569..166763	+	64	18309109	-	CPE0127	-	hypothetical protein
128	 28.89	0	166956..167585	+	209	18309110	-	CPE0128	-	hypothetical protein
129	 29.02	0	168100..169119	+	339	18309111	-	CPE0129	-	hypothetical protein
130	 32.03	0	169320..169472	+	50	18309112	-	CPE0130	-	hypothetical protein
131	 29.42	0	169828..170721	-	297	18309113	-	CPE0131	-	hypothetical protein
132	 34.30	+1	171050..172288	+	412	18309114	cinA	CPE0132	-	competence damage-inducible protein A
133	 27.18	0	172988..173914	+	308	18309115	-	CPE0133	-	CAAX amino terminal protease family protein
134	 31.90	0	174180..174389	+	69	18309116	-	CPE0134	-	hypothetical protein
135	 32.14	0	174742..175329	+	195	18309117	rubY	CPE0135	-	rubrerythrin
136	 29.67	0	175492..176037	-	181	18309118	-	CPE0136	-	hypothetical protein
137	 34.43	+1	176893..178449	+	518	18309119	-	CPE0137	-	ABC transporter
138	 26.72	0	178710..179510	+	266	18309120	-	CPE0138	-	hypothetical protein
139	 29.09	0	179861..180331	+	156	18309121	-	CPE0139	-	transposase
140	 26.61	0	180609..182378	+	589	18309122	-	CPE0140	-	hypothetical protein
141	 27.78	0	182398..182559	-	53	18309123	-	CPE0141	-	hypothetical protein
142	 26.85	0	182670..182885	+	71	18309124	-	CPE0142	-	hypothetical protein
143	 23.61	-1	182876..183235	+	119	18309125	-	CPE0143	-	hypothetical protein
144	 28.26	0	183767..184318	+	183	18309126	-	CPE0144	-	hypothetical protein
145	 27.66	0	184608..185453	+	281	18309127	-	CPE0145	-	hypothetical protein
146	 27.29	0	185482..186507	+	341	18309128	-	CPE0146	-	2-keto-3-deoxygluconate kinase
147	 30.44	0	186571..188370	+	599	18309129	bglR	CPE0147	-	beta-D-glucuronidase
148	 24.78	-1	188513..189202	+	229	18309130	-	CPE0148	-	transcriptional regulator
149	 32.75	+1	189392..190243	+	283	18309131	-	CPE0149	-	D-mannonate oxidoreductase
150	 33.83	+1	190258..190866	+	202	18309132	-	CPE0150	-	2-dehydro-3-deoxyphosphogluconate/4-hydroxy-2-ox oglutarate aldolase
151	 31.43	0	190957..192009	+	350	18309133	uxuA	CPE0151	-	mannonate dehydratase
152	 28.69	0	192029..193429	+	466	18309134	uxaC	CPE0152	-	glucuronate isomerase
153	 30.75	0	193550..194941	+	463	18309135	uidB	CPE0153	-	glucuronide permease
154	 32.71	+1	195005..196774	+	589	18309136	-	CPE0154	-	beta-hexosamidase A
155	 28.36	0	197405..199576	+	723	18309137	-	CPE0155	-	hypothetical protein
156	 29.89	0	199580..201148	+	522	18309138	-	CPE0156	-	putative surface protein
157	 26.59	0	201393..202148	+	251	18309139	-	CPE0157	-	sortase
158	 28.62	0	202217..203128	+	303	18309140	-	CPE0158	-	hypothetical protein
159	 31.82	0	203688..204281	+	197	18309141	-	CPE0159	-	hypothetical protein
160	 32.25	0	204516..205067	+	183	18309142	-	CPE0160	-	hypothetical protein
161	 22.22	-1	205272..206738	-	488	18309143	-	CPE0161	-	hypothetical protein
162	 34.98	+1	207408..208439	+	343	18309144	pfoR	CPE0162	-	regulatory protein
163	 30.74	0	209028..210530	+	500	18309145	pfoA	CPE0163	-	perfringolysin O
164	 27.45	0	210726..211184	+	152	18309146	-	CPE0164	-	hypothetical protein
165	 29.17	0	211256..211423	+	55	18309147	-	CPE0165	-	hypothetical protein
166	 32.06	0	212226..213713	+	495	18309148	-	CPE0166	-	membrane-spanning transporter protein
167	 34.73	+1	213872..215941	+	689	18309149	pbg	CPE0167	-	beta-galactosidase
168	 31.08	0	216493..217734	+	413	18309150	arcA	CPE0168	-	arginine deiminase
169	 32.33	0	217842..218837	+	331	18309151	arcB	CPE0169	-	ornithine carbamoyltransferase
170	 33.33	+1	218982..220418	+	478	18309152	arcD	CPE0170	-	arginine/ornithine antiporter
171	 33.86	+1	220479..221423	+	314	18309153	arcC	CPE0171	-	carbamate kinase
172	 28.73	0	221496..221951	+	151	18309154	argR	CPE0172	-	arginine repressor
173	 29.38	0	222495..225809	+	1104	18309155	colA	CPE0173	-	collagenase
174	 29.41	0	225957..226415	-	152	18309156	mscL	CPE0174	-	large-conductance mechanosensitive channel
175	 31.94	0	227207..227782	+	191	18309157	ycgJ	CPE0175	-	methyltransferase, UbiE/COQ5 family
176	 30.74	0	227846..229000	+	384	18309158	metB	CPE0176	-	cystathionine beta-lyase
177	 30.47	0	228987..229895	+	302	18309159	cysK	CPE0177	-	cysteine synthase family protein
178	 30.48	0	229993..230448	+	151	18309160	luxS	CPE0178	-	S-ribosylhomocysteinase
179	 28.88	0	231156..232166	+	336	18309161	lipA	CPE0179	-	lipase
180	 31.82	0	232388..233179	-	263	18309162	-	CPE0180	-	hypothetical protein
181	 27.59	0	233184..234002	-	272	18309163	-	CPE0181	-	hypothetical protein
182	 29.53	0	234005..235030	-	341	18309164	-	CPE0182	-	ABC transporter ATP-binding protein
183	 29.60	0	235341..236009	+	222	18309165	-	CPE0183	-	nitroreductase family protein
184	 33.03	+1	236295..236960	+	221	18309166	nanP	CPE0184	-	N-acetylmannosamine-6-phosphate 2-epimerase
185	 30.33	0	236997..237863	+	288	18309167	nanA	CPE0185	-	N-acetylneuraminate lyase
186	 32.02	0	237966..239483	+	505	18309168	-	CPE0186	-	hypothetical protein
187	 28.48	0	239593..240045	+	150	18309169	-	CPE0187	-	hypothetical protein
188	 32.21	0	240201..241088	+	295	18309170	-	CPE0188	-	ROK family protein
189	 28.10	0	241279..242118	+	279	18309171	-	CPE0189	-	RpiR family transcriptional regulator
190	 26.67	0	242319..242708	-	129	18309172	-	CPE0190	-	hypothetical protein
191	 31.18	0	242971..247857	+	1628	18309173	nagH	CPE0191	-	hyaluronidase
192	 34.67	+1	248808..249479	+	223	161485644	cbiM	CPE0192	-	cobalt transport protein CbiM
193	 31.73	0	249479..249790	+	103	18309175	cbiN	CPE0193	-	cobalt transport protein CbiN
194	 25.28	-1	249837..250544	+	235	18309176	cbiQ	CPE0194	-	cobalt ABC transporter permease
195	 29.84	0	250559..251416	+	285	18309177	cbiO	CPE0195	-	cobalt transporter ATP-binding subunit
196	 33.46	+1	251886..253466	+	526	18309178	ptiB	CPE0196	-	PTS arbutin-like enzyme IIBC component
197	 25.55	-1	253730..254500	+	256	18309179	-	CPE0197	-	hypothetical protein
198	 24.55	-1	254724..255224	+	166	18309180	-	CPE0198	-	hypothetical protein
199	 30.84	0	255480..256805	+	441	18309181	malH	CPE0199	-	maltose-6'-phosphate glucosidase
200	 22.84	-1	257386..257547	+	53	18309182	-	CPE0200	-	hypothetical protein
201	 29.98	0	257764..258627	-	287	18309183	-	CPE0201	-	5'-nucleotidase, lipoprotein e(P4) family
202	 30.33	0	258849..260048	-	399	18309184	spoIIQ	CPE0202	-	cell wall-binding protein
203	 24.51	-1	260735..261391	+	218	18309185	-	CPE0203	-	hypothetical protein
204	 23.49	-1	267399..268028	+	209	18309186	-	CPE0204	-	acetyltransferase
205	 27.90	0	268495..268770	+	91	18309187	-	CPE0205	-	hypothetical protein
206	 28.69	0	270353..270934	+	193	18309188	-	CPE0206	-	hypothetical protein
207	 24.03	-1	271073..273448	-	791	18309189	-	CPE0207	-	two-component sensor histidine kinase
208	 24.55	-1	273815..274873	+	352	18309190	-	CPE0208	-	hypothetical protein
209	 27.19	0	274974..275201	+	75	18309191	-	CPE0209	-	hypothetical protein
210	 20.98	-2	275341..276222	+	293	18309192	-	CPE0210	-	hypothetical protein
211	 26.83	0	276250..278448	+	732	18309193	-	CPE0211	-	hypothetical protein
212	 23.99	-1	278930..279700	+	256	18309194	-	CPE0212	-	hypothetical protein
213	 30.15	0	279879..280694	-	271	18309195	-	CPE0213	-	hypothetical protein
214	 26.67	0	281268..281912	-	214	18309196	-	CPE0214	-	heme oxygenase
215	 31.05	0	282313..283536	+	407	18309197	sbcD	CPE0215	-	exonuclease
216	 27.55	0	283514..287041	+	1175	18309198	sbcC	CPE0216	-	exonuclease SbcC
217	 30.33	0	287446..288642	+	398	18309199	ackA	CPE0217	-	acetate kinase
218	 25.30	-1	289079..289900	+	273	18309200	-	CPE0218	-	DnaJ-related protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.