IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1563	 26.28	0	1832449..1833015	-	188	18310545	-	CPE1563	-	hypothetical protein
1564	 25.31	-1	1833167..1833727	-	186	18310546	-	CPE1564	-	hypothetical protein
1565	 29.42	0	1833988..1834983	-	331	18310547	-	CPE1565	-	hypothetical protein
1566	 30.09	0	1835113..1836192	-	359	18310548	dinP	CPE1566	-	DNA polymerase IV
1567	 34.76	+1	1836335..1836967	-	210	18310549	ppiB	CPE1567	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1568	 27.16	0	1837145..1837549	-	134	18310550	-	CPE1568	-	hypothetical protein
1569	 31.89	0	1837666..1838496	-	276	18310551	-	CPE1569	-	HAD hydrolase, IIB family
1570	 27.59	0	1838800..1839513	-	237	18310552	-	CPE1570	-	phage shock protein A
1571	 28.92	0	1839598..1840299	-	233	18310553	-	CPE1571	-	putative lipoprotein
1572	 23.42	-1	1840447..1841112	+	221	18310554	-	CPE1572	-	hypothetical protein
1573	 27.98	0	1841356..1843692	-	778	18310555	-	CPE1573	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
1574	 31.37	0	1844089..1845006	-	305	18310556	-	CPE1574	-	hypothetical protein
1575	 30.93	0	1845153..1846442	-	429	18310557	-	CPE1575	-	hypothetical protein
1576	 28.73	0	1846695..1847063	-	122	18310558	-	CPE1576	-	hypothetical protein
1577	 34.59	+1	1847265..1848218	-	317	18310559	-	CPE1577	-	ABC transporter
1578	 32.79	+1	1848218..1849315	-	365	18310560	-	CPE1578	-	ABC transporter
1579	 30.66	0	1849305..1850840	-	511	18310561	-	CPE1579	-	ABC transporter
1580	 35.67	+1	1850981..1852093	-	370	18310562	-	CPE1580	-	membrane lipoprotein TmpC precursor
1581	 27.13	0	1852647..1853468	-	273	18310563	-	CPE1581	-	lipase
1582	 25.55	-1	1853950..1854771	-	273	18310564	-	CPE1582	-	hypothetical protein
1583	 28.94	0	1854780..1856486	-	568	18310565	-	CPE1583	-	ABC transporter
1584	 29.57	0	1856632..1857189	-	185	18310566	-	CPE1584	-	hypothetical protein
1585	 30.46	0	1857409..1857861	+	150	18310567	-	CPE1585	-	rhodanese domain protein
1586	 21.60	-2	1857907..1858230	-	107	18310568	-	CPE1586	-	hypothetical protein
1587	 28.76	0	1858372..1861566	-	1064	18310569	pulB	CPE1587	-	pullulanase
1588	 31.13	0	1861666..1863660	-	664	18310570	glgB	CPE1588	-	glycogen branching enzyme
1589	 25.71	0	1863740..1864447	-	235	18310571	-	CPE1589	-	hypothetical protein
1590	 28.79	0	1864689..1865459	+	256	18310572	-	CPE1590	-	hypothetical protein
1591	 28.05	0	1865456..1865947	+	163	18310573	-	CPE1591	-	hypothetical protein
1592	 26.82	0	1866140..1866907	-	255	18310574	-	CPE1592	-	hypothetical protein
1593	 28.43	0	1867256..1868683	-	475	18310575	-	CPE1593	-	hypothetical protein
1594	 19.25	-2	1868755..1868967	-	70	18310576	-	CPE1594	-	hypothetical protein
1595	 25.31	-1	1869140..1869463	-	107	18310577	-	CPE1595	-	putative thioredoxin
1596	 31.25	0	1869559..1870518	-	319	18310578	-	CPE1596	-	acetylxylan esterase
1597	 29.05	0	1870960..1871823	+	287	18310579	-	CPE1597	-	hypothetical protein
1598	 26.81	0	1871906..1872334	-	142	18310580	-	CPE1598	-	hypothetical protein
1599	 28.69	0	1872446..1873027	-	193	18310581	thiE	CPE1599	-	thiamine monophosphate synthase family protein
1600	 31.16	0	1873057..1874160	-	367	18310582	thiH	CPE1600	-	thiamine biosynthesis protein ThiH
1601	 35.69	+1	1874173..1874937	-	254	18310583	thiG	CPE1601	-	thiazole synthase
1602	 28.89	0	1875061..1875870	-	269	18310584	-	CPE1602	-	thiamine biosynthesis protein ThiF
1603	 26.67	0	1875946..1876140	-	64	18310585	-	CPE1603	-	thiamine biosynthesis protein ThiS
1604	 30.51	0	1876416..1878116	-	566	18310586	-	CPE1604	-	transporter, major facilitator family
1605	 25.31	-1	1878452..1879261	-	269	18310587	-	CPE1605	-	GTP pyrophosphokinase-like protein
1606	 26.67	0	1879313..1879612	-	99	18310588	-	CPE1606	-	hypothetical protein
1607	 30.63	0	1879670..1880113	-	147	18310589	-	CPE1607	-	methionine sulfoxide reductase B
1608	 24.69	-1	1880189..1880836	-	215	18310590	-	CPE1608	-	hypothetical protein
1609	 21.33	-2	1880986..1881285	+	99	18310591	-	CPE1609	-	hypothetical protein
1610	 28.25	0	1881329..1882312	-	327	18310592	-	CPE1610	-	endo-1,4-beta-xylanase
1611	 21.85	-2	1882553..1882822	-	89	18310593	-	CPE1611	-	hypothetical protein
1612	 26.45	0	1882925..1883578	+	217	18310594	-	CPE1612	-	hypothetical protein
1613	 23.50	-1	1883647..1884012	-	121	18310595	-	CPE1613	-	hypothetical protein
1614	 29.26	0	1884141..1885466	-	441	18310596	-	CPE1614	-	cell wall-binding protein
1615	 21.92	-2	1885709..1885927	-	72	18310597	-	CPE1615	-	hypothetical protein
1616	 28.57	0	1886074..1886262	+	62	18310598	-	CPE1616	-	hypothetical protein
1617	 30.05	0	1886615..1887010	-	131	18310599	-	CPE1617	-	hypothetical protein
1618	 27.13	0	1887026..1887283	-	85	18310600	-	CPE1618	-	hypothetical protein
1619	 27.62	0	1887300..1889591	-	763	18310601	-	CPE1619	-	ATP-dependent DNA helicase, UvrD/REP family
1620	 29.30	0	1890116..1890586	+	156	18310602	-	CPE1620	-	hypothetical protein
1621	 26.15	0	1890669..1891475	-	268	18310603	-	CPE1621	-	hypothetical protein
1622	 25.30	-1	1891744..1892739	-	331	18310604	-	CPE1622	-	hypothetical protein
1623	 24.62	-1	1892881..1893546	+	221	18310605	-	CPE1623	-	putative lipoprotein
1624	 24.77	-1	1893868..1895793	+	641	18310606	-	CPE1624	-	hypothetical protein
1625	 27.50	0	1896218..1899472	-	1084	18310607	-	CPE1625	-	helicase, SNF2/RAD54 family
1626	 28.47	0	1899839..1900825	-	328	18310608	-	CPE1626	-	transcriptional regulator
1627	 31.97	0	1900964..1901404	-	146	18310609	rbsB	CPE1627	-	ribose ABC transporter
1628	 32.78	+1	1901337..1901876	-	179	18310610	-	CPE1628	-	ribose ABC transporter
1629	 31.09	0	1901898..1902833	-	311	18310611	rbsC	CPE1629	-	ribose ABC transporter
1630	 30.35	0	1902847..1904352	-	501	18310612	rbsA	CPE1630	-	ribose ABC transporter
1631	 29.04	0	1904439..1904834	-	131	18310613	rbsD	CPE1631	-	D-ribose pyranase
1632	 29.47	0	1904837..1905769	-	310	18310614	rbsK	CPE1632	-	ribokinase
1633	 30.56	0	1905910..1906377	-	155	18310615	def	CPE1633	-	polypeptide deformylase
1634	 30.73	0	1906533..1907492	-	319	18310616	tagO	CPE1634	-	undecaprenyl-phosphate N-acetylglucosaminyltransferase
1635	 27.87	0	1907638..1908204	-	188	18310617	-	CPE1635	-	transcriptional regulator
1636	 32.40	0	1908420..1909064	-	214	18310618	ntpD	CPE1636	-	V-type ATP synthase subunit D
1637	 35.79	+1	1909067..1910449	-	460	18310619	ntpB	CPE1637	-	V-type ATP synthase subunit B
1638	 37.73	+2	1910442..1912217	-	591	18310620	ntpA	CPE1638	-	V-type ATP synthase subunit A
1639	 32.70	+1	1912234..1912551	-	105	18310621	ntpF	CPE1639	-	V-type ATP synthase subunit F
1640	 27.88	0	1912538..1913545	-	335	18310622	ntpC	CPE1640	-	V-type ATP synthase subunit C
1641	 26.13	0	1913558..1914154	-	198	18310623	ntpE	CPE1641	-	V-type ATPase, E subunit
1642	 35.35	+1	1914185..1914679	-	164	18310624	ntpK	CPE1642	-	V-type ATP synthase subunit K
1643	 32.20	0	1914734..1916680	-	648	18310625	ntpI	CPE1643	-	V-type ATP synthase subunit I
1644	 32.72	+1	1916667..1916993	-	108	18310626	-	CPE1644	-	hypothetical protein
1645	 28.04	0	1917270..1918949	-	559	18310627	-	CPE1645	-	radical SAM domain protein
1646	 26.53	0	1918849..1919451	-	200	18310628	-	CPE1646	-	hypothetical protein
1647	 25.80	0	1919598..1920884	-	428	18310629	-	CPE1647	-	hypothetical protein
1648	 27.25	0	1921032..1922561	+	509	18310630	spoVB	CPE1648	-	stage V sporulation protein B
1649	 26.34	0	1922655..1923455	-	266	18310631	-	CPE1649	-	hypothetical protein
1650	 28.35	0	1923565..1924407	-	280	18310632	-	CPE1650	-	hypothetical protein
1651	 32.34	0	1924419..1924922	-	167	18310633	-	CPE1651	-	hypothetical protein
1652	 26.75	0	1925171..1926172	+	333	18310634	-	CPE1652	-	hypothetical protein
1653	 27.07	0	1926200..1926550	-	116	18310635	-	CPE1653	-	hypothetical protein
1654	 28.66	0	1926770..1927240	+	156	18310636	-	CPE1654	-	AsnC family transcriptional regulator
1655	 27.94	0	1927347..1927550	+	67	18310637	-	CPE1655	-	hypothetical protein
1656	 29.61	0	1927598..1929343	-	581	18310638	-	CPE1656	-	hypothetical protein
1657	 28.65	0	1929544..1930398	+	284	18310639	comEC	CPE1657	-	late competence protein
1658	 26.17	0	1930455..1931138	-	227	18310640	-	CPE1658	-	hypothetical protein
1659	 30.59	0	1931324..1931542	+	72	18310641	feoA	CPE1659	-	ferrous iron transport protein A
1660	 30.95	0	1931580..1933343	+	587	18310642	feoB	CPE1660	-	ferrous iron transport protein B
1661	 30.80	0	1933553..1935250	-	565	18310643	argS	CPE1661	-	arginyl-tRNA synthetase
1662	 27.97	0	1935732..1937240	+	502	18310644	-	CPE1662	-	Ppx/GppA phosphatase family protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.