IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1485	 26.20	0	1740001..1740687	-	228	18310467	-	CPE1485	-	ABC transporter
1486	 25.93	0	1740689..1741444	-	251	18310468	-	CPE1486	-	ABC transporter
1487	 29.75	0	1741419..1742423	-	334	18310469	-	CPE1487	-	hypothetical protein
1488	 26.34	0	1742670..1742855	-	61	18310470	-	CPE1488	-	hypothetical protein
1489	 29.95	0	1743060..1743917	-	285	18310471	-	CPE1489	-	hypothetical protein
1490	 27.54	0	1744021..1744797	-	258	18310472	-	CPE1490	-	hypothetical protein
1491	 24.59	-1	1745032..1745454	+	140	18310473	-	CPE1491	-	hypothetical protein
1492	 30.29	0	1745657..1746181	-	174	18310474	-	CPE1492	-	hypothetical protein
1493	 29.02	0	1746252..1746761	-	169	18310475	-	CPE1493	-	hypothetical protein
1494	 29.26	0	1747023..1747856	-	277	18310476	-	CPE1494	-	PP-loop family protein
1495	 30.59	0	1747807..1748061	-	84	18310477	-	CPE1495	-	hypothetical protein
1496	 26.30	0	1748260..1748529	+	89	18310478	-	CPE1496	-	hypothetical protein
1497	 34.74	+1	1748546..1749898	+	450	18310479	-	CPE1497	-	hypothetical protein
1498	 27.38	0	1750111..1750614	-	167	18310480	-	CPE1498	-	hypothetical protein
1499	 30.94	0	1750939..1751814	-	291	18310481	comEC	CPE1499	-	late competence protein
1500	 22.15	-2	1751985..1753307	-	440	18310482	virS	CPE1500	-	sensor histidine kinase VirS
1501	 25.88	0	1753301..1754011	-	236	18310483	virR	CPE1501	-	DNA-binding response regulator, LytTr family
1502	 31.07	0	1754150..1755163	-	337	18310484	-	CPE1502	-	hypothetical protein
1503	 31.25	0	1755260..1755547	-	95	18310485	-	CPE1503	-	hypothetical protein
1504	 32.45	0	1755771..1756784	-	337	18310486	-	CPE1504	-	hypothetical protein
1505	 31.79	0	1757210..1758508	-	432	18310487	uraA	CPE1505	-	uracil transporter
1506	 32.26	0	1758696..1760279	+	527	18310488	-	CPE1506	-	ABC transporter
1507	 29.39	0	1760330..1761292	-	320	18310489	-	CPE1507	-	endo-1,4-beta-xylanase
1508	 30.18	0	1761676..1763862	-	728	18310490	topB	CPE1508	-	DNA topoisomerase III
1509	 24.95	-1	1763959..1765377	-	472	18310491	-	CPE1509	-	hypothetical protein
1510	 21.37	-2	1765387..1765854	-	155	18310492	-	CPE1510	-	hypothetical protein
1511	 22.56	-1	1766269..1766667	-	132	18310493	-	CPE1511	-	hypothetical protein
1512	 28.43	0	1766875..1770156	-	1093	18310494	-	CPE1512	-	sensor histidine kinase/response regulator
1513	 24.07	-1	1770238..1771338	-	366	18310495	-	CPE1513	-	hypothetical protein
1514	 25.00	-1	1771353..1772720	-	455	18310496	argI	CPE1514	-	AlgI-related protein
1515	 31.93	0	1772948..1773445	-	165	18310497	-	CPE1515	-	putative lipoprotein
1516	 28.02	0	1773697..1774920	-	407	18310498	-	CPE1516	-	ATP-dependent RNA helicase, DEAD/DEAH box family
1517	 24.04	-1	1774938..1775249	-	103	18310499	-	CPE1517	-	hypothetical protein
1518	 32.74	+1	1775558..1776904	-	448	18310500	gdhA	CPE1518	-	glutamate dehydrogenase
1519	 26.87	0	1777386..1777880	-	164	18310501	-	CPE1519	-	hypothetical protein
1520	 33.82	+1	1778114..1779139	+	341	18310502	ilvE	CPE1520	-	branched-chain amino acid aminotransferase
1521	 21.01	-2	1779183..1779596	-	137	18310503	-	CPE1521	-	hypothetical protein
1522	 23.63	-1	1779619..1780164	-	181	18310504	-	CPE1522	-	hypothetical protein
1523	 30.76	0	1780361..1783744	-	1127	18310505	nagL	CPE1523	-	hyaluronidase
1524	 26.86	0	1784103..1785029	+	308	18310506	-	CPE1524	-	hypothetical protein
1525	 29.32	0	1785150..1786919	-	589	18310507	-	CPE1525	-	ABC transporter
1526	 28.34	0	1786954..1788675	-	573	18310508	-	CPE1526	-	ABC transporter
1527	 25.16	-1	1789308..1790102	-	264	18310509	-	CPE1527	-	hypothetical protein
1528	 22.78	-1	1790285..1790644	-	119	18310510	-	CPE1528	-	hypothetical protein
1529	 27.20	0	1790912..1792249	+	445	18310511	-	CPE1529	-	hypothetical protein
1530	 19.42	-2	1792316..1792732	-	138	18310512	-	CPE1530	-	hypothetical protein
1531	 30.38	0	1792953..1793900	-	315	18310513	-	CPE1531	-	fructokinase
1532	 27.87	0	1793893..1795356	-	487	18310514	sacA	CPE1532	-	sucrose-6-P hydrolase
1533	 27.73	0	1795396..1796376	-	326	18310515	-	CPE1533	-	sucrose operon repressor
1534	 31.71	0	1796505..1797857	-	450	18310516	-	CPE1534	-	PTS system, sucrose-specific IIBC component
1535	 25.84	0	1798180..1798806	-	208	18310517	-	CPE1535	-	hypothetical protein
1536	 32.38	0	1799318..1800364	-	348	18310518	asrC	CPE1536	-	anaerobic sulfite reductase subunit C
1537	 30.68	0	1800377..1801168	-	263	18310519	asrB	CPE1537	-	anaerobic sulfite reductase subunit B
1538	 28.49	0	1801169..1802200	-	343	18310520	asrA	CPE1538	-	anaerobic sulfite reductase subunit A
1539	 23.84	-1	1802460..1802870	+	136	18310521	-	CPE1539	-	hypothetical protein
1540	 30.04	0	1802968..1804152	-	394	18310522	-	CPE1540	-	ABC transporter
1541	 29.34	0	1804139..1804840	-	233	18310523	-	CPE1541	-	ABC transporter
1542	 31.21	0	1804830..1805960	-	376	18310524	-	CPE1542	-	hypothetical protein
1543	 27.37	0	1806187..1806873	-	228	18310525	bioD	CPE1543	-	dithiobiotin synthetase
1544	 29.06	0	1806876..1807835	-	319	18310526	bioB	CPE1544	-	biotin synthase
1545	 29.73	0	1807854..1808408	-	184	18310527	bioY	CPE1545	-	biotin synthase
1546	 30.40	0	1808794..1809885	-	363	18310528	-	CPE1546	-	hypothetical protein
1547	 27.46	0	1810241..1813678	-	1145	18310529	spoVK	CPE1547	-	stage V sporulation protein K
1548	 29.31	0	1813734..1815722	-	662	18310530	fdh	CPE1548	-	molybdopterin oxidoreductase
1549	 31.32	0	1816133..1817227	+	364	18310531	prs	CPE1549	-	phosphoribosylpyrophosphate synthetase
1550	 29.57	0	1817277..1818338	-	353	18310532	-	CPE1550	-	hypothetical protein
1551	 29.19	0	1818549..1819538	-	329	18310533	-	CPE1551	-	endo-1,4-beta-xylanase
1552	 29.07	0	1819759..1821726	-	655	18310534	pulA	CPE1552	-	pullulanase
1553	 23.46	-1	1821902..1822438	+	178	18310535	sipS	CPE1553	-	signal peptidase I
1554	 26.24	0	1822494..1823339	-	281	18310536	-	CPE1554	-	putative lipoprotein
1555	 22.59	-1	1823448..1823717	-	89	18310537	-	CPE1555	-	hypothetical protein
1556	 27.53	0	1823828..1825843	-	671	18310538	-	CPE1556	-	hypothetical protein
1557	 26.92	0	1826145..1827095	-	316	18310539	-	CPE1557	-	hypothetical protein
1558	 31.93	0	1827243..1827884	+	213	18310540	-	CPE1558	-	di-trans, poly-cis-decaprenylcistransferase
1559	 25.87	0	1827889..1829388	+	499	18310541	-	CPE1559	-	diapophytoene dehydrogenase
1560	 26.06	0	1829419..1831110	-	563	18310542	-	CPE1560	-	GGDEF/HD domain protein
1561	 24.03	-1	1831325..1831969	-	214	18310543	-	CPE1561	-	hypothetical protein
1562	 21.96	-2	1831971..1832480	-	169	18310544	-	CPE1562	-	hypothetical protein
1563	 26.28	0	1832449..1833015	-	188	18310545	-	CPE1563	-	hypothetical protein
1564	 25.31	-1	1833167..1833727	-	186	18310546	-	CPE1564	-	hypothetical protein
1565	 29.42	0	1833988..1834983	-	331	18310547	-	CPE1565	-	hypothetical protein
1566	 30.09	0	1835113..1836192	-	359	18310548	dinP	CPE1566	-	DNA polymerase IV
1567	 34.76	+1	1836335..1836967	-	210	18310549	ppiB	CPE1567	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1568	 27.16	0	1837145..1837549	-	134	18310550	-	CPE1568	-	hypothetical protein
1569	 31.89	0	1837666..1838496	-	276	18310551	-	CPE1569	-	HAD hydrolase, IIB family
1570	 27.59	0	1838800..1839513	-	237	18310552	-	CPE1570	-	phage shock protein A
1571	 28.92	0	1839598..1840299	-	233	18310553	-	CPE1571	-	putative lipoprotein
1572	 23.42	-1	1840447..1841112	+	221	18310554	-	CPE1572	-	hypothetical protein
1573	 27.98	0	1841356..1843692	-	778	18310555	-	CPE1573	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
1574	 31.37	0	1844089..1845006	-	305	18310556	-	CPE1574	-	hypothetical protein
1575	 30.93	0	1845153..1846442	-	429	18310557	-	CPE1575	-	hypothetical protein
1576	 28.73	0	1846695..1847063	-	122	18310558	-	CPE1576	-	hypothetical protein
1577	 34.59	+1	1847265..1848218	-	317	18310559	-	CPE1577	-	ABC transporter
1578	 32.79	+1	1848218..1849315	-	365	18310560	-	CPE1578	-	ABC transporter
1579	 30.66	0	1849305..1850840	-	511	18310561	-	CPE1579	-	ABC transporter
1580	 35.67	+1	1850981..1852093	-	370	18310562	-	CPE1580	-	membrane lipoprotein TmpC precursor
1581	 27.13	0	1852647..1853468	-	273	18310563	-	CPE1581	-	lipase
1582	 25.55	-1	1853950..1854771	-	273	18310564	-	CPE1582	-	hypothetical protein
1583	 28.94	0	1854780..1856486	-	568	18310565	-	CPE1583	-	ABC transporter
1584	 29.57	0	1856632..1857189	-	185	18310566	-	CPE1584	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.