IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1444	 25.89	0	1701724..1702005	-	93	18310426	-	CPE1444	-	GIY-YIG domain protein
1445	 27.22	0	1702268..1704328	+	686	18310427	-	CPE1445	-	AraC family transcriptional regulator
1446	 24.88	-1	1704792..1706057	-	421	18310428	-	CPE1446	-	hypothetical protein
1447	 24.17	-1	1706074..1706826	-	250	18310429	-	CPE1447	-	hypothetical protein
1448	 27.84	0	1706848..1707375	-	175	18310430	-	CPE1448	-	transcriptional regulator
1449	 38.27	+2	1707673..1707834	-	53	18310431	-	CPE1449	-	hypothetical protein
1450	 29.84	0	1707913..1708542	-	209	18310432	-	CPE1450	-	ribonuclease H-related protein
1451	 26.75	0	1708558..1709529	-	323	18310433	-	CPE1451	-	hypothetical protein
1452	 28.18	0	1709642..1710670	-	342	18310434	-	CPE1452	-	rhomboid family protein
1453	 28.22	0	1710688..1712487	-	599	18310435	pepF	CPE1453	-	oligoendopeptidase F
1454	 28.57	0	1712508..1712906	-	132	18310436	-	CPE1454	-	hypothetical protein
1455	 23.51	-1	1713075..1713410	+	111	18310437	-	CPE1455	-	hypothetical protein
1456	 26.01	0	1713483..1714151	+	222	18310438	-	CPE1456	-	ABC transporter
1457	 27.53	0	1714170..1714979	+	269	18310439	-	CPE1457	-	ABC transporter
1458	 18.89	-2	1714974..1715153	-	59	18310440	-	CPE1458	-	hypothetical protein
1459	 31.18	0	1715138..1716529	-	463	18310441	-	CPE1459	-	hypothetical protein
1460	 27.63	0	1716808..1718226	-	472	18310442	-	CPE1460	-	hypothetical protein
1461	 32.68	+1	1718309..1719232	-	307	18310443	-	CPE1461	-	hypothetical protein
1462	 25.55	-1	1719499..1719909	-	136	18310444	furR	CPE1462	-	FUR family transcriptional regulator
1463	 31.52	0	1720201..1721028	-	275	18310445	-	CPE1463	-	PTS system protein
1464	 36.18	+2	1721028..1721834	-	268	18310446	-	CPE1464	-	PTS system protein
1465	 31.12	0	1721989..1722486	-	165	18310447	-	CPE1465	-	PTS system protein
1466	 32.14	0	1722641..1723060	-	139	18310448	-	CPE1466	-	PTS system protein
1467	 29.93	0	1723470..1724672	+	400	18310449	pfk	CPE1467	-	6-phosphofructokinase
1468	 31.97	0	1724731..1725096	-	121	18310450	-	CPE1468	-	hypothetical protein
1469	 28.75	0	1725353..1726639	-	428	18310451	-	CPE1469	-	aminotransferase, class V
1470	 29.81	0	1726809..1728740	+	643	18310452	-	CPE1470	-	prbable ABC transporter
1471	 33.55	+1	1728905..1729369	-	154	18310453	dut	CPE1471	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1472	 31.64	0	1729504..1730094	-	196	18310454	-	CPE1472	-	hypothetical protein
1473	 22.52	-1	1730180..1730734	-	184	18310455	-	CPE1473	-	hypothetical protein
1474	 27.93	0	1730973..1731620	+	215	18310456	hlyC	CPE1474	-	hemolysin III
1475	 26.33	0	1731671..1732555	-	294	18310457	-	CPE1475	-	LysR family transcriptional regulator
1476	 26.67	0	1732567..1732851	-	94	18310458	-	CPE1476	-	hypothetical protein
1477	 29.29	0	1733027..1733743	+	238	18310459	-	CPE1477	-	polysaccharide deacetylase family protein
1478	 25.14	-1	1733760..1734296	-	178	18310460	-	CPE1478	-	hypothetical protein
1479	 27.83	0	1734415..1735050	-	211	18310461	-	CPE1479	-	hypothetical protein
1480	 30.07	0	1735270..1736925	+	551	18310462	-	CPE1480	-	sulfate permease, SulP family
1481	 26.80	0	1736966..1737118	-	50	18310463	-	CPE1481	-	hypothetical protein
1482	 31.99	0	1737195..1738160	-	321	18310464	-	CPE1482	-	sugar kinase
1483	 26.15	0	1738200..1738394	-	64	18310465	-	CPE1483	-	hypothetical protein
1484	 28.29	0	1738652..1739980	-	442	18310466	-	CPE1484	-	MATE efflux family protein
1485	 26.20	0	1740001..1740687	-	228	18310467	-	CPE1485	-	ABC transporter
1486	 25.93	0	1740689..1741444	-	251	18310468	-	CPE1486	-	ABC transporter
1487	 29.75	0	1741419..1742423	-	334	18310469	-	CPE1487	-	hypothetical protein
1488	 26.34	0	1742670..1742855	-	61	18310470	-	CPE1488	-	hypothetical protein
1489	 29.95	0	1743060..1743917	-	285	18310471	-	CPE1489	-	hypothetical protein
1490	 27.54	0	1744021..1744797	-	258	18310472	-	CPE1490	-	hypothetical protein
1491	 24.59	-1	1745032..1745454	+	140	18310473	-	CPE1491	-	hypothetical protein
1492	 30.29	0	1745657..1746181	-	174	18310474	-	CPE1492	-	hypothetical protein
1493	 29.02	0	1746252..1746761	-	169	18310475	-	CPE1493	-	hypothetical protein
1494	 29.26	0	1747023..1747856	-	277	18310476	-	CPE1494	-	PP-loop family protein
1495	 30.59	0	1747807..1748061	-	84	18310477	-	CPE1495	-	hypothetical protein
1496	 26.30	0	1748260..1748529	+	89	18310478	-	CPE1496	-	hypothetical protein
1497	 34.74	+1	1748546..1749898	+	450	18310479	-	CPE1497	-	hypothetical protein
1498	 27.38	0	1750111..1750614	-	167	18310480	-	CPE1498	-	hypothetical protein
1499	 30.94	0	1750939..1751814	-	291	18310481	comEC	CPE1499	-	late competence protein
1500	 22.15	-2	1751985..1753307	-	440	18310482	virS	CPE1500	-	sensor histidine kinase VirS
1501	 25.88	0	1753301..1754011	-	236	18310483	virR	CPE1501	-	DNA-binding response regulator, LytTr family
1502	 31.07	0	1754150..1755163	-	337	18310484	-	CPE1502	-	hypothetical protein
1503	 31.25	0	1755260..1755547	-	95	18310485	-	CPE1503	-	hypothetical protein
1504	 32.45	0	1755771..1756784	-	337	18310486	-	CPE1504	-	hypothetical protein
1505	 31.79	0	1757210..1758508	-	432	18310487	uraA	CPE1505	-	uracil transporter
1506	 32.26	0	1758696..1760279	+	527	18310488	-	CPE1506	-	ABC transporter
1507	 29.39	0	1760330..1761292	-	320	18310489	-	CPE1507	-	endo-1,4-beta-xylanase
1508	 30.18	0	1761676..1763862	-	728	18310490	topB	CPE1508	-	DNA topoisomerase III
1509	 24.95	-1	1763959..1765377	-	472	18310491	-	CPE1509	-	hypothetical protein
1510	 21.37	-2	1765387..1765854	-	155	18310492	-	CPE1510	-	hypothetical protein
1511	 22.56	-1	1766269..1766667	-	132	18310493	-	CPE1511	-	hypothetical protein
1512	 28.43	0	1766875..1770156	-	1093	18310494	-	CPE1512	-	sensor histidine kinase/response regulator
1513	 24.07	-1	1770238..1771338	-	366	18310495	-	CPE1513	-	hypothetical protein
1514	 25.00	-1	1771353..1772720	-	455	18310496	argI	CPE1514	-	AlgI-related protein
1515	 31.93	0	1772948..1773445	-	165	18310497	-	CPE1515	-	putative lipoprotein
1516	 28.02	0	1773697..1774920	-	407	18310498	-	CPE1516	-	ATP-dependent RNA helicase, DEAD/DEAH box family
1517	 24.04	-1	1774938..1775249	-	103	18310499	-	CPE1517	-	hypothetical protein
1518	 32.74	+1	1775558..1776904	-	448	18310500	gdhA	CPE1518	-	glutamate dehydrogenase
1519	 26.87	0	1777386..1777880	-	164	18310501	-	CPE1519	-	hypothetical protein
1520	 33.82	+1	1778114..1779139	+	341	18310502	ilvE	CPE1520	-	branched-chain amino acid aminotransferase
1521	 21.01	-2	1779183..1779596	-	137	18310503	-	CPE1521	-	hypothetical protein
1522	 23.63	-1	1779619..1780164	-	181	18310504	-	CPE1522	-	hypothetical protein
1523	 30.76	0	1780361..1783744	-	1127	18310505	nagL	CPE1523	-	hyaluronidase
1524	 26.86	0	1784103..1785029	+	308	18310506	-	CPE1524	-	hypothetical protein
1525	 29.32	0	1785150..1786919	-	589	18310507	-	CPE1525	-	ABC transporter
1526	 28.34	0	1786954..1788675	-	573	18310508	-	CPE1526	-	ABC transporter
1527	 25.16	-1	1789308..1790102	-	264	18310509	-	CPE1527	-	hypothetical protein
1528	 22.78	-1	1790285..1790644	-	119	18310510	-	CPE1528	-	hypothetical protein
1529	 27.20	0	1790912..1792249	+	445	18310511	-	CPE1529	-	hypothetical protein
1530	 19.42	-2	1792316..1792732	-	138	18310512	-	CPE1530	-	hypothetical protein
1531	 30.38	0	1792953..1793900	-	315	18310513	-	CPE1531	-	fructokinase
1532	 27.87	0	1793893..1795356	-	487	18310514	sacA	CPE1532	-	sucrose-6-P hydrolase
1533	 27.73	0	1795396..1796376	-	326	18310515	-	CPE1533	-	sucrose operon repressor
1534	 31.71	0	1796505..1797857	-	450	18310516	-	CPE1534	-	PTS system, sucrose-specific IIBC component
1535	 25.84	0	1798180..1798806	-	208	18310517	-	CPE1535	-	hypothetical protein
1536	 32.38	0	1799318..1800364	-	348	18310518	asrC	CPE1536	-	anaerobic sulfite reductase subunit C
1537	 30.68	0	1800377..1801168	-	263	18310519	asrB	CPE1537	-	anaerobic sulfite reductase subunit B
1538	 28.49	0	1801169..1802200	-	343	18310520	asrA	CPE1538	-	anaerobic sulfite reductase subunit A
1539	 23.84	-1	1802460..1802870	+	136	18310521	-	CPE1539	-	hypothetical protein
1540	 30.04	0	1802968..1804152	-	394	18310522	-	CPE1540	-	ABC transporter
1541	 29.34	0	1804139..1804840	-	233	18310523	-	CPE1541	-	ABC transporter
1542	 31.21	0	1804830..1805960	-	376	18310524	-	CPE1542	-	hypothetical protein
1543	 27.37	0	1806187..1806873	-	228	18310525	bioD	CPE1543	-	dithiobiotin synthetase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.