IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1338	 31.45	0	1580067..1580861	-	264	18310320	thiD	CPE1338	-	phosphomethylpyrimidine kinase
1339	 27.14	0	1581169..1582008	+	279	18310321	-	CPE1339	-	hypothetical protein
1340	 30.08	0	1582126..1583139	-	337	18310322	-	CPE1340	-	LacI family transcriptional regulator
1341	 35.02	+1	1583357..1584421	+	354	18310323	-	CPE1341	-	galactoside ABC transporter
1342	 31.20	0	1584496..1586043	+	515	18310324	-	CPE1342	-	galactose/methyl galaxtoside transporter ATP-binding protein
1343	 32.56	0	1586015..1587043	+	342	18310325	mglC	CPE1343	-	beta-methylgalactoside transporter inner membrane component
1344	 27.96	0	1587084..1588106	-	340	18310326	-	CPE1344	-	aldose 1-epimerase
1345	 29.98	0	1588332..1589495	+	387	18310327	galK	CPE1345	-	galactokinase
1346	 27.52	0	1589618..1591114	+	498	18310328	galT	CPE1346	-	galactose-1-phosphate uridylyltransferase
1347	 28.35	0	1591305..1592969	-	554	18310329	-	CPE1347	-	uridine kinase
1348	 28.90	0	1593091..1593789	+	232	18310330	-	CPE1348	-	hypothetical protein
1349	 23.68	-1	1593786..1594220	+	144	18310331	-	CPE1349	-	hypothetical protein
1350	 35.87	+1	1594317..1595183	+	288	18310332	alf2	CPE1350	-	fructose-1,6-bisphosphate aldolase, class II
1351	 27.01	0	1595230..1596273	-	347	18310333	-	CPE1351	-	hypothetical protein
1352	 25.00	-1	1596413..1596976	+	187	18310334	-	CPE1352	-	hypothetical protein
1353	 23.95	-1	1597424..1597828	-	134	18310335	-	CPE1353	-	hypothetical protein
1354	 32.12	0	1597967..1599616	-	549	18310336	entB	CPE1354	-	enterotoxin
1355	 21.41	-2	1599782..1600150	-	122	18310337	-	CPE1355	-	hypothetical protein
1356	 29.97	0	1600338..1600724	+	128	18310338	-	CPE1356	-	hypothetical protein
1357	 29.63	0	1600850..1601335	-	161	18310339	-	CPE1357	-	ybaK/ebsC protein
1358	 24.21	-1	1601922..1603226	-	434	18310340	-	CPE1358	-	hypothetical protein
1359	 23.36	-1	1603308..1603748	-	146	18310341	-	CPE1359	-	hypothetical protein
1360	 28.17	0	1603772..1604158	-	128	18310342	-	CPE1360	-	hypothetical protein
1361	 30.71	0	1604254..1605129	-	291	18310343	-	CPE1361	-	hypothetical protein
1362	 28.70	0	1605491..1606051	-	186	18310344	-	CPE1362	-	hypothetical protein
1363	 30.28	0	1606130..1607080	-	316	18310345	-	CPE1363	-	ribonuclease Z
1364	 32.74	+1	1607193..1611608	-	1471	18310346	-	CPE1364	-	hypothetical protein
1365	 29.82	0	1611842..1612468	+	208	18310347	-	CPE1365	-	hypothetical protein
1366	 26.16	0	1612521..1613273	-	250	18310348	-	CPE1366	-	hypothetical protein
1367	 26.54	0	1613365..1614513	-	382	18310349	-	CPE1367	-	hypothetical protein
1368	 30.51	0	1614594..1619726	-	1710	18310350	-	CPE1368	-	hypothetical protein
1369	 27.78	0	1619964..1620467	-	167	18310351	-	CPE1369	-	GNAT family acetyltransferase
1370	 26.67	0	1620776..1621555	+	259	18310352	hisB	CPE1370	-	histidinol phosphatase
1371	 29.68	0	1621905..1623218	+	437	18310353	-	CPE1371	-	sodium- and chloride- dependent transporter
1372	 29.17	0	1623511..1624206	+	231	18310354	-	CPE1372	-	putative proton-coupled thiamine transporter YuaJ
1373	 24.61	-1	1624315..1625391	+	358	18310355	hisC	CPE1373	-	aminotransferase family protein
1374	 29.80	0	1625522..1626568	-	348	18310356	-	CPE1374	-	calcium/proton exchanger
1375	 29.71	0	1627010..1628305	-	431	18310357	-	CPE1375	-	phosphodiesterase/nucleotide pyrophosphatase family protein
1376	 25.60	-1	1628362..1628697	-	111	18310358	-	CPE1376	-	hypothetical protein
1377	 24.64	-1	1628835..1629248	-	137	18310359	-	CPE1377	-	hypothetical protein
1378	 27.08	0	1629448..1630359	-	303	18310360	-	CPE1378	-	hypothetical protein
1379	 28.91	0	1630393..1631184	-	263	18310361	-	CPE1379	-	D-alanyl-D-alanine carboxypeptidase
1380	 24.46	-1	1631454..1631780	-	108	18310362	-	CPE1380	-	hypothetical protein
1381	 24.63	-1	1632265..1633206	+	313	18310363	-	CPE1381	-	hypothetical protein
1382	 31.72	0	1633244..1634113	-	289	18310364	map	CPE1382	-	methionine aminopeptidase, type I
1383	 25.13	-1	1634461..1635057	-	198	18310365	-	CPE1383	-	hypothetical protein
1384	 22.40	-1	1635159..1636082	+	307	18310366	-	CPE1384	-	hypothetical protein
1385	 33.33	+1	1636222..1636791	-	189	18310367	-	CPE1385	-	hypothetical protein
1386	 35.27	+1	1636877..1637134	-	85	18310368	-	CPE1386	-	hypothetical protein
1387	 31.94	0	1637156..1637371	-	71	18310369	-	CPE1387	-	hypothetical protein
1388	 38.10	+2	1637407..1637889	-	160	18310370	-	CPE1388	-	hypothetical protein
1389	 28.79	0	1638106..1638699	-	197	18310371	-	CPE1389	-	GTPase EngB
1390	 30.59	0	1638699..1641029	-	776	18310372	lonA	CPE1390	-	ATP-dependent protease La
1391	 32.69	+1	1641151..1642863	-	570	18310373	lonB	CPE1391	-	Lon-like ATP-dependent protease
1392	 31.35	0	1642974..1644281	-	435	18310374	clpX	CPE1392	-	ATP-dependent protease ATP-binding subunit
1393	 31.62	0	1644321..1644905	-	194	18310375	clpP	CPE1393	-	ATP-dependent Clp protease proteolytic subunit
1394	 31.70	0	1645096..1646382	-	428	18310376	tig	CPE1394	-	trigger factor
1395	 22.47	-1	1646480..1647298	-	272	18310377	-	CPE1395	-	hypothetical protein
1396	 31.32	0	1647504..1649090	+	528	18310378	-	CPE1396	-	ATP-dependent RNA helicase, DEAD/DEAH box family
1397	 34.85	+1	1649129..1649392	-	87	18310379	-	CPE1397	-	hypothetical protein
1398	 33.47	+1	1649585..1650292	+	235	18310380	pfs	CPE1398	-	purine nucleoside phosphorylase
1399	 26.64	0	1650343..1651626	-	427	18310381	-	CPE1399	-	hypothetical protein
1400	 23.77	-1	1651637..1651981	-	114	18310382	-	CPE1400	-	hypothetical protein
1401	 28.93	0	1652165..1653073	-	302	18310383	-	CPE1401	-	DNA polymerase III subunit epsilon
1402	 27.58	0	1653320..1656241	-	973	18310384	-	CPE1402	-	zinc metalloprotease
1403	 30.00	0	1656616..1656885	-	89	18310385	-	CPE1403	-	hypothetical protein
1404	 29.60	0	1657055..1658206	+	383	18310386	-	CPE1404	-	hypothetical protein
1405	 30.72	0	1658258..1658983	-	241	18310387	-	CPE1405	-	N-acetylmuramoyl-L-alanine amidase
1406	 32.37	0	1659141..1659347	+	68	18310388	-	CPE1406	-	hypothetical protein
1407	 30.51	0	1659365..1659718	+	117	18310389	-	CPE1407	-	hypothetical protein
1408	 31.23	0	1659846..1661417	-	523	18310390	-	CPE1408	-	hypothetical protein
1409	 28.99	0	1661680..1662990	+	436	18310391	-	CPE1409	-	hypothetical protein
1410	 32.42	0	1663004..1663984	+	326	18310392	-	CPE1410	-	Na-translocating NADH-quinone reductase Nqr2 subunit
1411	 29.07	0	1664307..1664564	-	85	18310393	-	CPE1411	-	hypothetical protein
1412	 30.74	0	1664692..1665849	-	385	18310394	thiI	CPE1412	-	thiamine biosynthesis/tRNA modification protein ThiI
1413	 29.58	0	1665846..1666991	-	381	18310395	nifS	CPE1413	-	aminotransferase, class V
1414	 29.22	0	1667165..1667602	-	145	18310396	pheB	CPE1414	-	hypothetical protein
1415	 29.84	0	1667981..1670560	-	859	18310397	-	CPE1415	-	hypothetical protein
1416	 25.43	-1	1670669..1671250	-	193	18310398	-	CPE1416	-	hypothetical protein
1417	 26.90	0	1671289..1672128	-	279	18310399	-	CPE1417	-	hypothetical protein
1418	 29.90	0	1672370..1673098	+	242	18310400	-	CPE1418	-	hypothetical protein
1419	 33.26	+1	1673142..1674530	-	462	18310401	-	CPE1419	-	amino acid ABC transporter
1420	 28.16	0	1674837..1675493	-	218	18310402	-	CPE1420	-	poly A polymerase
1421	 30.15	0	1675816..1676568	+	250	18310403	-	CPE1421	-	hypothetical protein
1422	 34.56	+1	1676773..1677750	+	325	18310404	-	CPE1422	-	hypothetical protein
1423	 36.07	+2	1677991..1678173	+	60	18310405	sas2	CPE1423	-	small acid-soluble spore protein C2
1424	 26.76	0	1678221..1678661	-	146	18310406	-	CPE1424	-	hypothetical protein
1425	 30.25	0	1678661..1679308	-	215	18310407	-	CPE1425	-	pyrrolidone-carboxylate peptidase
1426	 33.12	+1	1679338..1680267	-	309	18310408	-	CPE1426	-	hypothetical protein
1427	 30.98	0	1680280..1680960	-	226	18310409	-	CPE1427	-	hypothetical protein
1428	 30.14	0	1681198..1683798	-	866	18310410	clpB	CPE1428	-	clpB protein
1429	 24.38	-1	1684114..1685655	+	513	18310411	-	CPE1429	-	hypothetical protein
1430	 27.18	0	1685736..1687166	+	476	18310412	clsD	CPE1430	-	cardiolipin synthase
1431	 29.34	0	1687324..1688949	-	541	18310413	-	CPE1431	-	FAD flavoprotein oxidase
1432	 32.55	0	1689150..1690433	-	427	18310414	hemL	CPE1432	-	glutamate-1-semialdehyde aminotransferase
1433	 31.78	0	1690491..1691456	-	321	18310415	hemB	CPE1433	-	delta-aminolevulinic acid dehydratase
1434	 30.02	0	1691513..1692991	-	492	18310416	hemX	CPE1434	-	uroporphyrinogen-III methyltransferase/synthase
1435	 30.37	0	1693000..1693875	-	291	18310417	hemC	CPE1435	-	porphobilinogen deaminase
1436	 26.40	0	1693933..1694595	-	220	18310418	-	CPE1436	-	precorrin-2 dehydrogenase
1437	 27.85	0	1694559..1695761	-	400	18310419	hemA	CPE1437	-	glutamyl-tRNA reductase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.