IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1301	 33.72	+1	1539718..1541256	-	512	18310283	pgm	CPE1301	-	phosphoglyceromutase
1302	 37.35	+2	1541381..1542127	-	248	18310284	tpiA	CPE1302	-	triosephosphate isomerase
1303	 35.59	+1	1542371..1543564	-	397	18310285	pgk	CPE1303	-	phosphoglycerate kinase
1304	 37.34	+2	1543708..1544706	-	332	18310286	gapC	CPE1304	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1305	 31.85	0	1544797..1545876	-	359	18310287	-	CPE1305	-	transcriptional regulator
1306	 28.35	0	1546057..1547442	-	461	18310288	sigL	CPE1306	-	RNA polymerase factor sigma-54
1307	 26.95	0	1547694..1548461	-	255	18310289	-	CPE1307	-	hypothetical protein
1308	 27.25	0	1548448..1548957	-	169	18310290	-	CPE1308	-	hypothetical protein
1309	 29.79	0	1549560..1550630	-	356	18310291	-	CPE1309	-	hypothetical protein
1310	 29.64	0	1550721..1551560	-	279	18310292	-	CPE1310	-	degV family protein
1311	 29.87	0	1551575..1552036	-	153	18310293	-	CPE1311	-	hypothetical protein
1312	 27.34	0	1552125..1552958	-	277	18310294	-	CPE1312	-	HAD hydrolase, IIB family
1313	 31.67	0	1553118..1554680	-	520	18310295	-	CPE1313	-	vanW-like family protein
1314	 31.57	0	1554845..1555810	-	321	18310296	-	CPE1314	-	muramidase
1315	 30.24	0	1555884..1556789	-	301	18310297	ddl	CPE1315	-	D-alanine--D-alanine ligase
1316	 22.87	-1	1556909..1559374	-	821	18310298	-	CPE1316	-	two-component sensor histidine kinase
1317	 29.17	0	1559474..1560337	+	287	18310299	-	CPE1317	-	hypothetical protein
1318	 30.95	0	1560366..1560995	-	209	18310300	-	CPE1318	-	endonuclease III
1319	 30.35	0	1561007..1561711	-	234	18310301	-	CPE1319	-	acyltransferase
1320	 27.49	0	1561749..1562741	-	330	18310302	-	CPE1320	-	hypothetical protein
1321	 31.76	0	1562886..1563395	-	169	18310303	cysE	CPE1321	-	serine O-acetyltransferase
1322	 31.67	0	1563414..1564316	-	300	18310304	cysK	CPE1322	-	cysteine synthase A
1323	 27.67	0	1564655..1565926	-	423	18310305	-	CPE1323	-	CBS domain/MgtE intracellular domain protein
1324	 27.76	0	1566266..1567054	+	262	18310306	-	CPE1324	-	amino acid ABC transporter
1325	 27.26	0	1567068..1567709	+	213	18310307	-	CPE1325	-	amino acid ABC transporter
1326	 30.16	0	1567721..1568413	+	230	18310308	-	CPE1326	-	amino acid ABC transporter
1327	 22.91	-1	1568585..1569265	-	226	18310309	-	CPE1327	-	hypothetical protein
1328	 30.73	0	1569338..1570219	-	293	18310310	-	CPE1328	-	putative lipid kinase
1329	 28.16	0	1570535..1571056	+	173	18310311	-	CPE1329	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1330	 27.35	0	1571103..1571453	-	116	18310312	-	CPE1330	-	hypothetical protein
1331	 32.96	+1	1571475..1572011	-	178	18310313	rubY	CPE1331	-	rubrerythrin
1332	 29.48	0	1572063..1573412	-	449	18310314	spoVR	CPE1332	-	stage V sporulation protein R
1333	 30.96	0	1573439..1574617	-	392	18310315	-	CPE1333	-	hypothetical protein
1334	 29.49	0	1574621..1576543	-	640	18310316	prkA	CPE1334	-	serine protein kinase
1335	 27.88	0	1576633..1578411	-	592	18310317	recQ	CPE1335	-	ATP-dependent DNA helicase RecQ
1336	 29.33	0	1578642..1579265	-	207	18310318	thiE	CPE1336	-	thiamine-phosphate pyrophosphorylase
1337	 30.08	0	1579258..1580055	-	265	18310319	thiM	CPE1337	-	hydroxyethylthiazole kinase
1338	 31.45	0	1580067..1580861	-	264	18310320	thiD	CPE1338	-	phosphomethylpyrimidine kinase
1339	 27.14	0	1581169..1582008	+	279	18310321	-	CPE1339	-	hypothetical protein
1340	 30.08	0	1582126..1583139	-	337	18310322	-	CPE1340	-	LacI family transcriptional regulator
1341	 35.02	+1	1583357..1584421	+	354	18310323	-	CPE1341	-	galactoside ABC transporter
1342	 31.20	0	1584496..1586043	+	515	18310324	-	CPE1342	-	galactose/methyl galaxtoside transporter ATP-binding protein
1343	 32.56	0	1586015..1587043	+	342	18310325	mglC	CPE1343	-	beta-methylgalactoside transporter inner membrane component
1344	 27.96	0	1587084..1588106	-	340	18310326	-	CPE1344	-	aldose 1-epimerase
1345	 29.98	0	1588332..1589495	+	387	18310327	galK	CPE1345	-	galactokinase
1346	 27.52	0	1589618..1591114	+	498	18310328	galT	CPE1346	-	galactose-1-phosphate uridylyltransferase
1347	 28.35	0	1591305..1592969	-	554	18310329	-	CPE1347	-	uridine kinase
1348	 28.90	0	1593091..1593789	+	232	18310330	-	CPE1348	-	hypothetical protein
1349	 23.68	-1	1593786..1594220	+	144	18310331	-	CPE1349	-	hypothetical protein
1350	 35.87	+1	1594317..1595183	+	288	18310332	alf2	CPE1350	-	fructose-1,6-bisphosphate aldolase, class II
1351	 27.01	0	1595230..1596273	-	347	18310333	-	CPE1351	-	hypothetical protein
1352	 25.00	-1	1596413..1596976	+	187	18310334	-	CPE1352	-	hypothetical protein
1353	 23.95	-1	1597424..1597828	-	134	18310335	-	CPE1353	-	hypothetical protein
1354	 32.12	0	1597967..1599616	-	549	18310336	entB	CPE1354	-	enterotoxin
1355	 21.41	-2	1599782..1600150	-	122	18310337	-	CPE1355	-	hypothetical protein
1356	 29.97	0	1600338..1600724	+	128	18310338	-	CPE1356	-	hypothetical protein
1357	 29.63	0	1600850..1601335	-	161	18310339	-	CPE1357	-	ybaK/ebsC protein
1358	 24.21	-1	1601922..1603226	-	434	18310340	-	CPE1358	-	hypothetical protein
1359	 23.36	-1	1603308..1603748	-	146	18310341	-	CPE1359	-	hypothetical protein
1360	 28.17	0	1603772..1604158	-	128	18310342	-	CPE1360	-	hypothetical protein
1361	 30.71	0	1604254..1605129	-	291	18310343	-	CPE1361	-	hypothetical protein
1362	 28.70	0	1605491..1606051	-	186	18310344	-	CPE1362	-	hypothetical protein
1363	 30.28	0	1606130..1607080	-	316	18310345	-	CPE1363	-	ribonuclease Z
1364	 32.74	+1	1607193..1611608	-	1471	18310346	-	CPE1364	-	hypothetical protein
1365	 29.82	0	1611842..1612468	+	208	18310347	-	CPE1365	-	hypothetical protein
1366	 26.16	0	1612521..1613273	-	250	18310348	-	CPE1366	-	hypothetical protein
1367	 26.54	0	1613365..1614513	-	382	18310349	-	CPE1367	-	hypothetical protein
1368	 30.51	0	1614594..1619726	-	1710	18310350	-	CPE1368	-	hypothetical protein
1369	 27.78	0	1619964..1620467	-	167	18310351	-	CPE1369	-	GNAT family acetyltransferase
1370	 26.67	0	1620776..1621555	+	259	18310352	hisB	CPE1370	-	histidinol phosphatase
1371	 29.68	0	1621905..1623218	+	437	18310353	-	CPE1371	-	sodium- and chloride- dependent transporter
1372	 29.17	0	1623511..1624206	+	231	18310354	-	CPE1372	-	putative proton-coupled thiamine transporter YuaJ
1373	 24.61	-1	1624315..1625391	+	358	18310355	hisC	CPE1373	-	aminotransferase family protein
1374	 29.80	0	1625522..1626568	-	348	18310356	-	CPE1374	-	calcium/proton exchanger
1375	 29.71	0	1627010..1628305	-	431	18310357	-	CPE1375	-	phosphodiesterase/nucleotide pyrophosphatase family protein
1376	 25.60	-1	1628362..1628697	-	111	18310358	-	CPE1376	-	hypothetical protein
1377	 24.64	-1	1628835..1629248	-	137	18310359	-	CPE1377	-	hypothetical protein
1378	 27.08	0	1629448..1630359	-	303	18310360	-	CPE1378	-	hypothetical protein
1379	 28.91	0	1630393..1631184	-	263	18310361	-	CPE1379	-	D-alanyl-D-alanine carboxypeptidase
1380	 24.46	-1	1631454..1631780	-	108	18310362	-	CPE1380	-	hypothetical protein
1381	 24.63	-1	1632265..1633206	+	313	18310363	-	CPE1381	-	hypothetical protein
1382	 31.72	0	1633244..1634113	-	289	18310364	map	CPE1382	-	methionine aminopeptidase, type I
1383	 25.13	-1	1634461..1635057	-	198	18310365	-	CPE1383	-	hypothetical protein
1384	 22.40	-1	1635159..1636082	+	307	18310366	-	CPE1384	-	hypothetical protein
1385	 33.33	+1	1636222..1636791	-	189	18310367	-	CPE1385	-	hypothetical protein
1386	 35.27	+1	1636877..1637134	-	85	18310368	-	CPE1386	-	hypothetical protein
1387	 31.94	0	1637156..1637371	-	71	18310369	-	CPE1387	-	hypothetical protein
1388	 38.10	+2	1637407..1637889	-	160	18310370	-	CPE1388	-	hypothetical protein
1389	 28.79	0	1638106..1638699	-	197	18310371	-	CPE1389	-	GTPase EngB
1390	 30.59	0	1638699..1641029	-	776	18310372	lonA	CPE1390	-	ATP-dependent protease La
1391	 32.69	+1	1641151..1642863	-	570	18310373	lonB	CPE1391	-	Lon-like ATP-dependent protease
1392	 31.35	0	1642974..1644281	-	435	18310374	clpX	CPE1392	-	ATP-dependent protease ATP-binding subunit
1393	 31.62	0	1644321..1644905	-	194	18310375	clpP	CPE1393	-	ATP-dependent Clp protease proteolytic subunit
1394	 31.70	0	1645096..1646382	-	428	18310376	tig	CPE1394	-	trigger factor
1395	 22.47	-1	1646480..1647298	-	272	18310377	-	CPE1395	-	hypothetical protein
1396	 31.32	0	1647504..1649090	+	528	18310378	-	CPE1396	-	ATP-dependent RNA helicase, DEAD/DEAH box family
1397	 34.85	+1	1649129..1649392	-	87	18310379	-	CPE1397	-	hypothetical protein
1398	 33.47	+1	1649585..1650292	+	235	18310380	pfs	CPE1398	-	purine nucleoside phosphorylase
1399	 26.64	0	1650343..1651626	-	427	18310381	-	CPE1399	-	hypothetical protein
1400	 23.77	-1	1651637..1651981	-	114	18310382	-	CPE1400	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.