IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1250	 20.85	-2	1457655..1458872	-	405	18310232	-	CPE1250	-	hypothetical protein
1251	 28.46	0	1458882..1459865	-	327	18310233	-	CPE1251	-	hypothetical protein
1252	 31.81	0	1460384..1461106	-	240	18310234	-	CPE1252	-	hypothetical protein
1253	 19.76	-2	1461286..1461624	-	112	18310235	-	CPE1253	-	hypothetical protein
1254	 34.47	+1	1461651..1463057	-	468	18310236	gltB	CPE1254	-	putative oxidoreductase
1255	 33.78	+1	1463050..1463949	-	299	18310237	hydG	CPE1255	-	ferredoxin--NADP(+) reductase subunit alpha
1256	 34.10	+1	1464100..1465266	-	388	18310238	bdhB	CPE1256	-	NADPH-dependent butanol dehydrogenase
1257	 33.26	+1	1465378..1466829	-	483	18310239	-	CPE1257	-	hypothetical protein
1258	 32.46	0	1467436..1470303	+	955	18310240	entA	CPE1258	-	putative enterotoxin
1259	 29.84	0	1470518..1471432	-	304	18310241	-	CPE1259	-	hypothetical protein
1260	 31.00	0	1471730..1472500	-	256	18310242	-	CPE1260	-	hypothetical protein
1261	 26.41	0	1472753..1473373	-	206	18310243	-	CPE1261	-	hypothetical protein
1262	 32.75	+1	1473706..1473876	+	56	18310244	-	CPE1262	-	hypothetical protein
1263	 32.04	0	1474429..1474893	+	154	18310245	greA	CPE1263	-	transcription elongation factor GreA
1264	 31.24	0	1475202..1479968	-	1588	18310246	-	CPE1264	-	sialidase-like protein
1265	 31.29	0	1480226..1481989	+	587	18310247	-	CPE1265	-	hypothetical protein
1266	 32.37	0	1482112..1486179	-	1355	18310248	-	CPE1266	-	beta-galactosidase
1267	 28.84	0	1486429..1487763	-	444	18310249	-	CPE1267	-	hypothetical protein
1268	 28.21	0	1487900..1489618	-	572	18310250	adeC	CPE1268	-	adenine deaminase
1269	 30.47	0	1489634..1490680	-	348	18310251	-	CPE1269	-	spermidine/putrescine-binding protein 1
1270	 28.59	0	1490720..1491751	-	343	18310252	-	CPE1270	-	ABC transporter
1271	 30.52	0	1491787..1492569	-	260	18310253	-	CPE1271	-	ABC transporter
1272	 33.04	+1	1492571..1492909	-	112	18310254	-	CPE1272	-	hypothetical protein
1273	 29.17	0	1493064..1493399	-	111	18310255	-	CPE1273	-	hypothetical protein
1274	 23.76	-1	1493787..1494935	-	382	18310256	-	CPE1274	-	lysine-N-methylase
1275	 28.36	0	1495134..1496099	-	321	18310257	-	CPE1275	-	dihydrouridine synthase family protein
1276	 29.98	0	1496203..1497573	-	456	18310258	-	CPE1276	-	hypothetical protein
1277	 26.90	0	1497946..1498287	-	113	18310259	-	CPE1277	-	hypothetical protein
1278	 33.28	+1	1498299..1500215	-	638	18310260	-	CPE1278	-	oligopeptide transporter, OPT family
1279	 31.41	0	1500861..1504352	-	1163	18310261	nagK	CPE1279	-	hyaluronidase
1280	 28.10	0	1504584..1504736	-	50	18310262	-	CPE1280	-	hypothetical protein
1281	 30.19	0	1505003..1510066	-	1687	18310263	-	CPE1281	-	hypothetical protein
1282	 27.86	0	1510515..1511903	-	462	18310264	-	CPE1282	-	transmembrane protein
1283	 29.20	0	1512322..1513071	+	249	18310265	-	CPE1283	-	transcriptional regulator
1284	 30.12	0	1513189..1514370	-	393	18310266	-	CPE1284	-	pyrimidine nucleoside transporter
1285	 28.78	0	1514831..1515928	-	365	18310267	-	CPE1285	-	peptidase, S41 family
1286	 36.42	+2	1516256..1516708	+	150	18310268	-	CPE1286	-	hypothetical protein
1287	 19.61	-2	1516999..1519614	-	871	18310269	-	CPE1287	-	hypothetical protein
1288	 21.60	-2	1520263..1521327	-	354	18310270	-	CPE1288	-	hypothetical protein
1289	 30.98	0	1521612..1523180	-	522	18310271	-	CPE1289	-	hypothetical protein
1290	 26.36	0	1523220..1524911	-	563	18310272	-	CPE1290	-	hypothetical protein
1291	 38.80	+2	1525991..1526173	-	60	18310273	-	CPE1291	-	hypothetical protein
1292	 28.32	0	1526730..1527308	-	192	18310274	xpt	CPE1292	-	xanthine phosphoribosyltransferase
1293	 26.67	0	1527481..1528470	+	329	18310275	-	CPE1293	-	tetratricopeptide repeat protein
1294	 29.39	0	1528817..1529425	-	202	18310276	-	CPE1294	-	hypothetical protein
1295	 31.00	0	1529901..1530371	-	156	18310277	smpB	CPE1295	-	SsrA-binding protein
1296	 31.47	0	1530963..1533218	-	751	18310278	rnr	CPE1296	-	ribonuclease R
1297	 29.87	0	1533451..1533681	-	76	18310279	secG	CPE1297	-	preprotein translocase subunit SecG
1298	 27.87	0	1533885..1534433	-	182	18310280	-	CPE1298	-	hypothetical protein
1299	 33.87	+1	1535696..1536991	-	431	18310281	eno	CPE1299	-	phosphopyruvate hydratase
1300	 32.24	0	1537694..1539151	-	485	18310282	-	CPE1300	-	amino acid antiporter
1301	 33.72	+1	1539718..1541256	-	512	18310283	pgm	CPE1301	-	phosphoglyceromutase
1302	 37.35	+2	1541381..1542127	-	248	18310284	tpiA	CPE1302	-	triosephosphate isomerase
1303	 35.59	+1	1542371..1543564	-	397	18310285	pgk	CPE1303	-	phosphoglycerate kinase
1304	 37.34	+2	1543708..1544706	-	332	18310286	gapC	CPE1304	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1305	 31.85	0	1544797..1545876	-	359	18310287	-	CPE1305	-	transcriptional regulator
1306	 28.35	0	1546057..1547442	-	461	18310288	sigL	CPE1306	-	RNA polymerase factor sigma-54
1307	 26.95	0	1547694..1548461	-	255	18310289	-	CPE1307	-	hypothetical protein
1308	 27.25	0	1548448..1548957	-	169	18310290	-	CPE1308	-	hypothetical protein
1309	 29.79	0	1549560..1550630	-	356	18310291	-	CPE1309	-	hypothetical protein
1310	 29.64	0	1550721..1551560	-	279	18310292	-	CPE1310	-	degV family protein
1311	 29.87	0	1551575..1552036	-	153	18310293	-	CPE1311	-	hypothetical protein
1312	 27.34	0	1552125..1552958	-	277	18310294	-	CPE1312	-	HAD hydrolase, IIB family
1313	 31.67	0	1553118..1554680	-	520	18310295	-	CPE1313	-	vanW-like family protein
1314	 31.57	0	1554845..1555810	-	321	18310296	-	CPE1314	-	muramidase
1315	 30.24	0	1555884..1556789	-	301	18310297	ddl	CPE1315	-	D-alanine--D-alanine ligase
1316	 22.87	-1	1556909..1559374	-	821	18310298	-	CPE1316	-	two-component sensor histidine kinase
1317	 29.17	0	1559474..1560337	+	287	18310299	-	CPE1317	-	hypothetical protein
1318	 30.95	0	1560366..1560995	-	209	18310300	-	CPE1318	-	endonuclease III
1319	 30.35	0	1561007..1561711	-	234	18310301	-	CPE1319	-	acyltransferase
1320	 27.49	0	1561749..1562741	-	330	18310302	-	CPE1320	-	hypothetical protein
1321	 31.76	0	1562886..1563395	-	169	18310303	cysE	CPE1321	-	serine O-acetyltransferase
1322	 31.67	0	1563414..1564316	-	300	18310304	cysK	CPE1322	-	cysteine synthase A
1323	 27.67	0	1564655..1565926	-	423	18310305	-	CPE1323	-	CBS domain/MgtE intracellular domain protein
1324	 27.76	0	1566266..1567054	+	262	18310306	-	CPE1324	-	amino acid ABC transporter
1325	 27.26	0	1567068..1567709	+	213	18310307	-	CPE1325	-	amino acid ABC transporter
1326	 30.16	0	1567721..1568413	+	230	18310308	-	CPE1326	-	amino acid ABC transporter
1327	 22.91	-1	1568585..1569265	-	226	18310309	-	CPE1327	-	hypothetical protein
1328	 30.73	0	1569338..1570219	-	293	18310310	-	CPE1328	-	putative lipid kinase
1329	 28.16	0	1570535..1571056	+	173	18310311	-	CPE1329	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1330	 27.35	0	1571103..1571453	-	116	18310312	-	CPE1330	-	hypothetical protein
1331	 32.96	+1	1571475..1572011	-	178	18310313	rubY	CPE1331	-	rubrerythrin
1332	 29.48	0	1572063..1573412	-	449	18310314	spoVR	CPE1332	-	stage V sporulation protein R
1333	 30.96	0	1573439..1574617	-	392	18310315	-	CPE1333	-	hypothetical protein
1334	 29.49	0	1574621..1576543	-	640	18310316	prkA	CPE1334	-	serine protein kinase
1335	 27.88	0	1576633..1578411	-	592	18310317	recQ	CPE1335	-	ATP-dependent DNA helicase RecQ
1336	 29.33	0	1578642..1579265	-	207	18310318	thiE	CPE1336	-	thiamine-phosphate pyrophosphorylase
1337	 30.08	0	1579258..1580055	-	265	18310319	thiM	CPE1337	-	hydroxyethylthiazole kinase
1338	 31.45	0	1580067..1580861	-	264	18310320	thiD	CPE1338	-	phosphomethylpyrimidine kinase
1339	 27.14	0	1581169..1582008	+	279	18310321	-	CPE1339	-	hypothetical protein
1340	 30.08	0	1582126..1583139	-	337	18310322	-	CPE1340	-	LacI family transcriptional regulator
1341	 35.02	+1	1583357..1584421	+	354	18310323	-	CPE1341	-	galactoside ABC transporter
1342	 31.20	0	1584496..1586043	+	515	18310324	-	CPE1342	-	galactose/methyl galaxtoside transporter ATP-binding protein
1343	 32.56	0	1586015..1587043	+	342	18310325	mglC	CPE1343	-	beta-methylgalactoside transporter inner membrane component
1344	 27.96	0	1587084..1588106	-	340	18310326	-	CPE1344	-	aldose 1-epimerase
1345	 29.98	0	1588332..1589495	+	387	18310327	galK	CPE1345	-	galactokinase
1346	 27.52	0	1589618..1591114	+	498	18310328	galT	CPE1346	-	galactose-1-phosphate uridylyltransferase
1347	 28.35	0	1591305..1592969	-	554	18310329	-	CPE1347	-	uridine kinase
1348	 28.90	0	1593091..1593789	+	232	18310330	-	CPE1348	-	hypothetical protein
1349	 23.68	-1	1593786..1594220	+	144	18310331	-	CPE1349	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.