IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
80	 24.05	-1	114098..114334	+	78	18309062	-	CPE0080	-	hypothetical protein
81	 35.55	+1	114586..115533	+	315	18309063	glcK	CPE0081	-	glucose kinase
82	 37.57	+2	116074..116616	+	180	18309064	-	CPE0082	-	hypothetical protein
83	 26.60	0	116949..117572	+	207	18309065	gpmA	CPE0083	-	phosphoglycerate mutase family protein
84	 26.72	0	117931..118701	-	256	18309066	iolR	CPE0084	-	transcription repressor of myo-inositol catabolism operon
85	 32.38	0	119183..120337	+	384	18309067	mdh	CPE0085	-	alcohol dehydrogenase
86	 34.87	+1	120344..121189	+	281	18309068	alf1	CPE0086	-	fructose-bisphosphate aldolase
87	 32.25	0	121203..122219	+	338	18309069	iolC	CPE0087	-	myo-inositol catabolism protein
88	 32.94	+1	122233..123000	+	255	18309070	iolB	CPE0088	-	myo-inositol catabolism protein
89	 34.11	+1	123017..124936	+	639	18309071	iolD	CPE0089	-	myo-inositol catabolism protein
90	 31.75	0	125006..126013	+	335	18309072	-	CPE0090	-	dehydrogenase
91	 30.20	0	126132..127025	+	297	18309073	iolE	CPE0091	-	myo-inositol catabolism protein
92	 32.70	+1	127107..128696	+	529	18309074	-	CPE0092	-	putative symporter YidK
93	 32.67	+1	128783..129832	+	349	18309075	-	CPE0093	-	dehydrogenase
94	 31.75	0	130202..130960	+	252	18309076	-	CPE0094	-	hypothetical protein
95	 32.56	0	131191..131967	+	258	18309077	-	CPE0095	-	crotonase
96	 35.27	+1	132070..133620	+	516	18309078	-	CPE0096	-	propionate CoA-transferase
97	 33.51	+1	133724..134860	+	378	18309079	acdS	CPE0097	-	acyl-CoA dehydrogenase
98	 28.77	0	135262..135612	-	116	18309080	-	CPE0098	-	hypothetical protein
99	 33.86	+1	136190..137320	+	376	18309081	gldA	CPE0099	-	glycerol dehydrogenase
100	 33.10	+1	137346..139094	+	582	18309082	-	CPE0100	-	dihydroxyacetone kinase
101	 30.54	0	139454..140887	+	477	18309083	-	CPE0101	-	multidrug resistance protein
102	 28.21	0	141164..141436	+	90	18309084	-	CPE0102	-	hypothetical protein
103	 32.70	+1	141837..142790	-	317	18309085	ldh	CPE0103	-	L-lactate dehydrogenase
104	 23.04	-1	143416..144591	+	391	18309086	-	CPE0104	-	hypothetical protein
105	 27.40	0	144710..145147	+	145	18309087	-	CPE0105	-	hypothetical protein
106	 27.80	0	145358..146098	+	246	18309088	-	CPE0106	-	hypothetical protein
107	 26.12	0	146210..147082	+	290	18309089	-	CPE0107	-	hypothetical protein
108	 30.84	0	147218..148582	-	454	18309090	-	CPE0108	-	GTP-binding protein
109	 27.02	0	149310..149594	-	94	18309091	-	CPE0109	-	hypothetical protein
110	 31.50	0	150273..151694	-	473	18309092	thiH	CPE0110	-	thiamine biosynthesis protein ThiH
111	 32.14	0	151800..152051	-	83	18309093	-	CPE0111	-	hypothetical protein
112	 30.33	0	152495..154060	+	521	18309094	-	CPE0112	-	hypothetical protein
113	 31.58	0	154209..154436	+	75	18309095	-	CPE0113	-	hypothetical protein
114	 28.00	0	154720..154944	+	74	18309096	-	CPE0114	-	hypothetical protein
115	 27.92	0	155002..155943	-	313	18309097	-	CPE0115	-	N-acetylmuramoyl-L-alanine amidase
116	 23.08	-1	155956..157116	-	386	18309098	-	CPE0116	-	hypothetical protein
117	 24.94	-1	157128..158378	-	416	18309099	-	CPE0117	-	hypothetical protein
118	 22.60	-1	158494..159294	+	266	18309100	-	CPE0118	-	hypothetical protein
119	 29.22	0	159434..160114	+	226	18309101	-	CPE0119	-	two-component response regulator
120	 26.92	0	160111..161124	+	337	18309102	-	CPE0120	-	two-component sensor histidine kinase
121	 15.66	-2	161176..161373	+	65	18309103	-	CPE0121	-	hypothetical protein
122	 30.22	0	161923..162693	+	256	18309104	-	CPE0122	-	ABC transporter
123	 27.37	0	162683..164662	+	659	18309105	-	CPE0123	-	ABC transporter
124	 17.54	-2	164831..165400	-	189	18309106	-	CPE0124	-	hypothetical protein
125	 23.94	-1	165492..165704	+	70	18309107	-	CPE0125	-	hypothetical protein
126	 20.49	-2	165999..166325	+	108	18309108	-	CPE0126	-	hypothetical protein
127	 26.15	0	166569..166763	+	64	18309109	-	CPE0127	-	hypothetical protein
128	 28.89	0	166956..167585	+	209	18309110	-	CPE0128	-	hypothetical protein
129	 29.02	0	168100..169119	+	339	18309111	-	CPE0129	-	hypothetical protein
130	 32.03	0	169320..169472	+	50	18309112	-	CPE0130	-	hypothetical protein
131	 29.42	0	169828..170721	-	297	18309113	-	CPE0131	-	hypothetical protein
132	 34.30	+1	171050..172288	+	412	18309114	cinA	CPE0132	-	competence damage-inducible protein A
133	 27.18	0	172988..173914	+	308	18309115	-	CPE0133	-	CAAX amino terminal protease family protein
134	 31.90	0	174180..174389	+	69	18309116	-	CPE0134	-	hypothetical protein
135	 32.14	0	174742..175329	+	195	18309117	rubY	CPE0135	-	rubrerythrin
136	 29.67	0	175492..176037	-	181	18309118	-	CPE0136	-	hypothetical protein
137	 34.43	+1	176893..178449	+	518	18309119	-	CPE0137	-	ABC transporter
138	 26.72	0	178710..179510	+	266	18309120	-	CPE0138	-	hypothetical protein
139	 29.09	0	179861..180331	+	156	18309121	-	CPE0139	-	transposase
140	 26.61	0	180609..182378	+	589	18309122	-	CPE0140	-	hypothetical protein
141	 27.78	0	182398..182559	-	53	18309123	-	CPE0141	-	hypothetical protein
142	 26.85	0	182670..182885	+	71	18309124	-	CPE0142	-	hypothetical protein
143	 23.61	-1	182876..183235	+	119	18309125	-	CPE0143	-	hypothetical protein
144	 28.26	0	183767..184318	+	183	18309126	-	CPE0144	-	hypothetical protein
145	 27.66	0	184608..185453	+	281	18309127	-	CPE0145	-	hypothetical protein
146	 27.29	0	185482..186507	+	341	18309128	-	CPE0146	-	2-keto-3-deoxygluconate kinase
147	 30.44	0	186571..188370	+	599	18309129	bglR	CPE0147	-	beta-D-glucuronidase
148	 24.78	-1	188513..189202	+	229	18309130	-	CPE0148	-	transcriptional regulator
149	 32.75	+1	189392..190243	+	283	18309131	-	CPE0149	-	D-mannonate oxidoreductase
150	 33.83	+1	190258..190866	+	202	18309132	-	CPE0150	-	2-dehydro-3-deoxyphosphogluconate/4-hydroxy-2-ox oglutarate aldolase
151	 31.43	0	190957..192009	+	350	18309133	uxuA	CPE0151	-	mannonate dehydratase
152	 28.69	0	192029..193429	+	466	18309134	uxaC	CPE0152	-	glucuronate isomerase
153	 30.75	0	193550..194941	+	463	18309135	uidB	CPE0153	-	glucuronide permease
154	 32.71	+1	195005..196774	+	589	18309136	-	CPE0154	-	beta-hexosamidase A
155	 28.36	0	197405..199576	+	723	18309137	-	CPE0155	-	hypothetical protein
156	 29.89	0	199580..201148	+	522	18309138	-	CPE0156	-	putative surface protein
157	 26.59	0	201393..202148	+	251	18309139	-	CPE0157	-	sortase
158	 28.62	0	202217..203128	+	303	18309140	-	CPE0158	-	hypothetical protein
159	 31.82	0	203688..204281	+	197	18309141	-	CPE0159	-	hypothetical protein
160	 32.25	0	204516..205067	+	183	18309142	-	CPE0160	-	hypothetical protein
161	 22.22	-1	205272..206738	-	488	18309143	-	CPE0161	-	hypothetical protein
162	 34.98	+1	207408..208439	+	343	18309144	pfoR	CPE0162	-	regulatory protein
163	 30.74	0	209028..210530	+	500	18309145	pfoA	CPE0163	-	perfringolysin O
164	 27.45	0	210726..211184	+	152	18309146	-	CPE0164	-	hypothetical protein
165	 29.17	0	211256..211423	+	55	18309147	-	CPE0165	-	hypothetical protein
166	 32.06	0	212226..213713	+	495	18309148	-	CPE0166	-	membrane-spanning transporter protein
167	 34.73	+1	213872..215941	+	689	18309149	pbg	CPE0167	-	beta-galactosidase
168	 31.08	0	216493..217734	+	413	18309150	arcA	CPE0168	-	arginine deiminase
169	 32.33	0	217842..218837	+	331	18309151	arcB	CPE0169	-	ornithine carbamoyltransferase
170	 33.33	+1	218982..220418	+	478	18309152	arcD	CPE0170	-	arginine/ornithine antiporter
171	 33.86	+1	220479..221423	+	314	18309153	arcC	CPE0171	-	carbamate kinase
172	 28.73	0	221496..221951	+	151	18309154	argR	CPE0172	-	arginine repressor
173	 29.38	0	222495..225809	+	1104	18309155	colA	CPE0173	-	collagenase
174	 29.41	0	225957..226415	-	152	18309156	mscL	CPE0174	-	large-conductance mechanosensitive channel
175	 31.94	0	227207..227782	+	191	18309157	ycgJ	CPE0175	-	methyltransferase, UbiE/COQ5 family
176	 30.74	0	227846..229000	+	384	18309158	metB	CPE0176	-	cystathionine beta-lyase
177	 30.47	0	228987..229895	+	302	18309159	cysK	CPE0177	-	cysteine synthase family protein
178	 30.48	0	229993..230448	+	151	18309160	luxS	CPE0178	-	S-ribosylhomocysteinase
179	 28.88	0	231156..232166	+	336	18309161	lipA	CPE0179	-	lipase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.