IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1149	 32.12	0	1342512..1344071	+	519	18310131	cilA	CPE1149	-	citrate lyase alpha subunit
1150	 26.71	0	1344090..1344602	+	170	18310132	-	CPE1150	-	triphosphoribosyl-dephospho-CoA synthase
1151	 32.02	0	1344643..1345788	+	381	18310133	-	CPE1151	-	malate oxidoreductase
1152	 31.92	0	1345809..1347149	+	446	18310134	citN	CPE1152	-	citrate/sodium symporter
1153	 33.56	+1	1347518..1349752	+	744	18310135	pflA	CPE1153	-	formate acetyltransferase
1154	 31.07	0	1350038..1350745	+	235	149134307	pflA	CPE1154	-	pyruvate formate-lyase activating enzyme
1155	 28.68	0	1351007..1353736	+	909	18310137	mutS	CPE1155	-	DNA mismatch repair protein
1156	 28.94	0	1353763..1355787	+	674	18310138	mutL	CPE1156	-	DNA mismatch repair protein
1157	 29.15	0	1355805..1356737	+	310	18310139	miaA	CPE1157	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1158	 28.81	0	1356781..1357023	+	80	18310140	-	CPE1158	-	RNA chaperone Hfq
1159	 31.07	0	1357128..1358408	+	426	18310141	-	CPE1159	-	aluminum resistance protein
1160	 27.81	0	1358667..1359572	+	301	18310142	-	CPE1160	-	hypothetical protein
1161	 28.92	0	1359730..1360341	-	203	18310143	lexA	CPE1161	-	LexA repressor
1162	 30.03	0	1360549..1360941	+	130	18310144	-	CPE1162	-	hypothetical protein
1163	 25.57	-1	1361032..1362384	-	450	18310145	xerC	CPE1163	-	site-specific tyrosine recombinase XerC
1164	 31.05	0	1362882..1363100	-	72	18310146	-	CPE1164	-	hypothetical protein
1165	 30.36	0	1363219..1364427	+	402	18310147	thd	CPE1165	-	threonine dehydratase, catabolic
1166	 33.20	+1	1364467..1365936	-	489	18310148	-	CPE1166	-	lysine specific permease
1167	 29.65	0	1366440..1367660	+	406	18310149	-	CPE1167	-	glutamate/ aspartate transporter
1168	 26.13	0	1367695..1368027	-	110	18310150	-	CPE1168	-	hypothetical protein
1169	 30.54	0	1368302..1368946	+	214	18310151	-	CPE1169	-	hypothetical protein
1170	 27.85	0	1368979..1369197	-	72	18310152	-	CPE1170	-	hypothetical protein
1171	 23.96	-1	1369260..1369643	-	127	18310153	-	CPE1171	-	hypothetical protein
1172	 25.85	0	1369976..1370710	-	244	18310154	-	CPE1172	-	haloacid dehalogenase, IB family protein
1173	 30.07	0	1370990..1371418	+	142	18310155	-	CPE1173	-	hypothetical protein
1174	 30.54	0	1371494..1372246	-	250	18310156	exoA	CPE1174	-	exodeoxyribonuclease III
1175	 29.39	0	1372431..1372658	+	75	18310157	-	CPE1175	-	hypothetical protein
1176	 25.30	-1	1372966..1373388	-	140	18310158	-	CPE1176	-	hypothetical protein
1177	 33.85	+1	1373711..1374289	-	192	18310159	pyrE	CPE1177	-	orotate phosphoribosyltransferase
1178	 32.56	0	1374440..1375339	-	299	18310160	pyrD	CPE1178	-	dihydroorotate dehydrogenase 1B
1179	 33.06	+1	1375359..1376099	-	246	18310161	pyrZ	CPE1179	-	dihydroorotate dehydrogenase electron transfer subunit
1180	 31.48	0	1376124..1376987	-	287	18310162	pyrF	CPE1180	-	orotidine 5'-phosphate decarboxylase
1181	 31.17	0	1376997..1378196	-	399	18310163	pyrC	CPE1181	-	dihydroorotase, multifunctional complex type
1182	 23.27	-1	1378218..1378376	-	52	18310164	-	CPE1182	-	hypothetical protein
1183	 31.06	0	1378381..1379304	-	307	18310165	pyrB	CPE1183	-	aspartate carbamoyltransferase catalytic subunit
1184	 31.67	0	1379716..1380495	-	259	18310166	-	CPE1184	-	beta-lactamase
1185	 32.15	0	1380727..1381827	-	366	18310167	pfk	CPE1185	-	6-phosphofructokinase
1186	 29.29	0	1382037..1382951	-	304	18310168	uppP	CPE1186	-	undecaprenyl pyrophosphate phosphatase
1187	 30.27	0	1383211..1384188	-	325	18310169	manA	CPE1187	-	mannose-6-phosphate isomerase, class I
1188	 28.24	0	1384439..1385794	+	451	18310170	-	CPE1188	-	UDP-N-acetylmuramyl tripeptide synthetase
1189	 28.69	0	1385812..1386543	+	243	18310171	cobQ	CPE1189	-	glutamine amidotransferase, CobB/CobQ family
1190	 30.36	0	1386523..1388070	-	515	18310172	-	CPE1190	-	hypothetical protein
1191	 27.12	0	1388384..1388962	+	192	18310173	-	CPE1191	-	hypothetical protein
1192	 25.33	-1	1388996..1390432	-	478	18310174	-	CPE1192	-	two-component sensor histidine kinase
1193	 28.02	0	1390419..1391096	-	225	18310175	-	CPE1193	-	two-component response regulator
1194	 28.11	0	1391335..1392597	-	420	18310176	-	CPE1194	-	hypothetical protein
1195	 29.12	0	1392606..1395620	-	1004	18310177	-	CPE1195	-	hypothetical protein
1196	 32.48	0	1395825..1397813	-	662	18310178	-	CPE1196	-	hypothetical protein
1197	 28.18	0	1398012..1400357	-	781	18310179	-	CPE1197	-	helicase protein
1198	 28.53	0	1400459..1400833	-	124	18310180	-	CPE1198	-	hypothetical protein
1199	 31.39	0	1400875..1401852	-	325	18310181	-	CPE1199	-	hypothetical protein
1200	 28.73	0	1402014..1403120	-	368	18310182	-	CPE1200	-	hypothetical protein
1201	 26.91	0	1403122..1404039	-	305	18310183	-	CPE1201	-	hypothetical protein
1202	 29.38	0	1404296..1406902	+	868	18310184	-	CPE1202	-	calcium-transporting ATPase
1203	 28.39	0	1406947..1408563	-	538	18310185	spoVB	CPE1203	-	stage V sporulation protein B
1204	 29.33	0	1408585..1409559	-	324	18310186	-	CPE1204	-	ribosomal large subunit pseudouridine synthase C
1205	 33.08	+1	1409630..1410814	-	394	18310187	-	CPE1205	-	amidohydrolase family protein
1206	 26.17	0	1411020..1413014	-	664	18310188	pcrA	CPE1206	-	ATP-dependent helicase
1207	 30.41	0	1413167..1414639	+	490	18310189	-	CPE1207	-	nicotinate phosphoribosyltransferase
1208	 29.38	0	1414693..1414869	-	58	18310190	-	CPE1208	-	hypothetical protein
1209	 25.89	0	1414899..1415234	-	111	18310191	-	CPE1209	-	hypothetical protein
1210	 29.29	0	1415853..1416272	+	139	18310192	-	CPE1210	-	FUR family transcriptional regulator
1211	 29.54	0	1416350..1417747	-	465	18310193	-	CPE1211	-	dipeptidase PepV
1212	 31.05	0	1417936..1419246	-	436	18310194	uraA	CPE1212	-	uracil permease
1213	 24.15	-1	1419531..1419737	-	68	18310195	-	CPE1213	-	hypothetical protein
1214	 29.06	0	1419709..1419942	-	77	18310196	-	CPE1214	-	hypothetical protein
1215	 26.79	0	1420122..1420595	-	157	18310197	-	CPE1215	-	ABC transporter
1216	 27.33	0	1420728..1420877	-	49	18310198	-	CPE1216	-	hypothetical protein
1217	 30.97	0	1420883..1421941	-	352	18310199	-	CPE1217	-	ABC transporter
1218	 28.74	0	1422029..1423030	-	333	18310200	-	CPE1218	-	ABC transporter
1219	 28.76	0	1423043..1423807	-	254	18310201	cbiJ	CPE1219	-	cobalt-precorrin-6x reductase
1220	 31.12	0	1423826..1424548	-	240	18310202	cbiH	CPE1220	-	precorrin-3B C17-methyltransferase
1221	 27.63	0	1424703..1425701	-	332	18310203	cbiG	CPE1221	-	cobalamin biosynthesis protein CbiG
1222	 31.61	0	1425704..1426459	-	251	18310204	cbiF	CPE1222	-	precorrin-4 C11-methyltransferase
1223	 31.22	0	1426510..1427172	-	220	18310205	cbiL	CPE1223	-	cobalt-precorrin-2 C(20)-methyltransferase
1224	 25.08	-1	1427172..1427765	-	197	18310206	cbiT	CPE1224	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
1225	 26.80	0	1427785..1428396	-	203	18310207	cbiE	CPE1225	-	precorrin-6y C5,15-methyltransferase (decarboxylating)
1226	 32.06	0	1428424..1429521	-	365	18310208	cbiD	CPE1226	-	cobalt-precorrin-6A synthase
1227	 31.11	0	1429539..1430168	-	209	18310209	cbiC	CPE1227	-	precorrin-8X methylmutase
1228	 28.94	0	1430168..1431010	-	280	18310210	cbiK	CPE1228	-	CbiK protein
1229	 30.90	0	1431530..1432762	+	410	18310211	-	CPE1229	-	hypothetical protein
1230	 21.36	-2	1432782..1433090	-	102	18310212	-	CPE1230	-	hypothetical protein
1231	 31.12	0	1433358..1436747	-	1129	18310213	-	CPE1231	-	surface protein
1232	 38.52	+2	1437121..1438122	-	333	18310214	-	CPE1232	-	hypothetical protein
1233	 37.63	+2	1438156..1438854	-	232	18310215	-	CPE1233	-	hypothetical protein
1234	 32.80	+1	1439365..1442370	-	1001	18310216	nagJ	CPE1234	-	hyaluronidase
1235	 27.36	0	1442598..1443551	-	317	18310217	-	CPE1235	-	hypothetical protein
1236	 30.41	0	1443783..1444466	-	227	18310218	sod	CPE1236	-	Mn/Fe superoxide dismutase
1237	 20.10	-2	1444528..1445139	-	203	18310219	-	CPE1237	-	hypothetical protein
1238	 29.74	0	1445449..1446897	+	482	18310220	-	CPE1238	-	multidrug resistance protein
1239	 27.27	0	1446957..1447121	-	54	18310221	-	CPE1239	-	hypothetical protein
1240	 31.32	0	1447152..1448489	-	445	18310222	-	CPE1240	-	magnesium transporter
1241	 27.78	0	1449030..1449803	-	257	18310223	-	CPE1241	-	hypothetical protein
1242	 34.29	+1	1450066..1450275	+	69	18310224	cspL	CPE1242	-	cold shock protein
1243	 30.92	0	1450428..1450634	-	68	18310225	-	CPE1243	-	hypothetical protein
1244	 28.24	0	1450681..1451151	-	156	18310226	-	CPE1244	-	hypothetical protein
1245	 30.56	0	1451269..1452240	-	323	18310227	-	CPE1245	-	hypothetical protein
1246	 20.48	-2	1452414..1452662	+	82	18310228	-	CPE1246	-	hypothetical protein
1247	 27.54	0	1452739..1455294	-	851	18310229	-	CPE1247	-	hypothetical protein
1248	 27.90	0	1455868..1456806	-	312	18310230	-	CPE1248	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.