IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1081	 26.46	0	1284976..1285542	+	188	18310063	-	CPE1081	-	hypothetical protein
1082	 27.63	0	1285574..1286449	+	291	18310064	-	CPE1082	-	RpiR family transcriptional regulator
1083	 29.60	0	1286708..1287886	+	392	18310065	-	CPE1083	-	hypothetical protein
1084	 29.66	0	1288009..1288662	+	217	18310066	cmk	CPE1084	-	cytidylate kinase
1085	 29.09	0	1288664..1289512	+	282	18310067	lytB	CPE1085	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1086	 24.91	-1	1289622..1290416	+	264	18310068	-	CPE1086	-	hypothetical protein
1087	 28.00	0	1290516..1290665	-	49	18310069	-	CPE1087	-	hypothetical protein
1088	 26.18	0	1290802..1291374	+	190	18310070	-	CPE1088	-	hypothetical protein
1089	 17.85	-2	1291513..1291977	+	154	18310071	-	CPE1089	-	hypothetical protein
1090	 27.25	0	1292023..1292499	-	158	18310072	-	CPE1090	-	hypothetical protein
1091	 25.70	0	1292677..1293069	-	130	18310073	-	CPE1091	-	hypothetical protein
1092	 29.88	0	1293432..1294415	+	327	18310074	pac	CPE1092	-	choloylglycine hydrolase family protein
1093	 30.28	0	1294599..1295942	+	447	18310075	-	CPE1093	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1094	 31.10	0	1296398..1298011	+	537	18310076	-	CPE1094	-	phosphoenolpyruvate carboxylase
1095	 27.14	0	1298199..1299215	+	338	18310077	-	CPE1095	-	integrase/recombinase
1096	 27.00	0	1299873..1300172	+	99	18310078	-	CPE1096	-	hypothetical protein
1097	 27.23	0	1300313..1300525	-	70	18310079	-	CPE1097	-	transcriptional regulator
1098	 24.73	-1	1300712..1301176	+	154	18310080	-	CPE1098	-	hypothetical protein
1099	 29.04	0	1301201..1301503	+	100	18310081	-	CPE1099	-	hypothetical protein
1100	 23.81	-1	1301594..1302286	+	230	18310082	-	CPE1100	-	hypothetical protein
1101	 27.78	0	1302323..1302556	+	77	18310083	-	CPE1101	-	hypothetical protein
1102	 27.80	0	1302601..1303431	+	276	18310084	-	CPE1102	-	hypothetical protein
1103	 27.61	0	1303501..1306695	+	1064	18310085	-	CPE1103	-	hypothetical protein
1104	 31.02	0	1306795..1307226	+	143	18310086	-	CPE1104	-	hypothetical protein
1105	 31.46	0	1307241..1307561	+	106	18310087	-	CPE1105	-	hypothetical protein
1106	 22.22	-1	1307575..1307745	+	56	18310088	-	CPE1106	-	hypothetical protein
1107	 26.38	0	1307775..1308695	+	306	18310089	-	CPE1107	-	hypothetical protein
1108	 28.96	0	1309065..1309247	+	60	18310090	-	CPE1108	-	hypothetical protein
1109	 23.25	-1	1309449..1309904	+	151	18310091	-	CPE1109	-	hypothetical protein
1110	 27.78	0	1310119..1311216	+	365	18310092	-	CPE1110	-	hypothetical protein
1111	 20.75	-2	1311231..1311389	+	52	18310093	-	CPE1111	-	hypothetical protein
1112	 22.47	-1	1311383..1311649	+	88	18310094	-	CPE1112	-	hypothetical protein
1113	 28.65	0	1311688..1312071	+	127	18310095	-	CPE1113	-	hypothetical protein
1114	 27.22	0	1312073..1312252	+	59	18310096	-	CPE1114	-	hypothetical protein
1115	 21.40	-2	1312258..1312500	+	80	18310097	-	CPE1115	-	hypothetical protein
1116	 28.22	0	1312560..1312970	+	136	18310098	-	CPE1116	-	hypothetical protein
1117	 28.89	0	1312983..1313567	+	194	18310099	-	CPE1117	-	hypothetical protein
1118	 27.61	0	1313567..1315243	+	558	18310100	-	CPE1118	-	phage-related terminase
1119	 18.97	-2	1315252..1315425	+	57	18310101	-	CPE1119	-	hypothetical protein
1120	 26.96	0	1315442..1316665	+	407	18310102	-	CPE1120	-	hypothetical protein
1121	 27.69	0	1316640..1317242	+	200	18310103	-	CPE1121	-	phage phi-C31 gp35-like protein
1122	 28.85	0	1317279..1318415	+	378	18310104	-	CPE1122	-	phage-related head protein
1123	 25.51	-1	1318478..1318771	+	97	18310105	-	CPE1123	-	hypothetical protein
1124	 29.87	0	1318764..1319081	+	105	18310106	-	CPE1124	-	hypothetical protein
1125	 31.76	0	1319082..1319525	+	147	18310107	-	CPE1125	-	hypothetical protein
1126	 26.78	0	1319535..1319885	+	116	18310108	-	CPE1126	-	hypothetical protein
1127	 32.00	0	1319901..1320500	+	199	18310109	-	CPE1127	-	hypothetical protein
1128	 26.14	0	1320548..1320853	+	101	18310110	-	CPE1128	-	hypothetical protein
1129	 26.19	0	1321015..1321350	+	111	18310111	-	CPE1129	-	hypothetical protein
1130	 31.69	0	1321368..1324169	+	933	18310112	-	CPE1130	-	hypothetical protein
1131	 28.02	0	1324150..1324845	+	231	18310113	-	CPE1131	-	hypothetical protein
1132	 30.79	0	1324849..1327800	+	983	18310114	-	CPE1132	-	hypothetical protein
1133	 29.97	0	1327849..1329723	+	624	18310115	-	CPE1133	-	choline binding protein
1134	 27.68	0	1329739..1331685	+	648	18310116	-	CPE1134	-	hypothetical protein
1135	 31.69	0	1331702..1331944	+	80	18310117	-	CPE1135	-	hypothetical protein
1136	 31.67	0	1332026..1332205	+	59	18310118	-	CPE1136	-	hypothetical protein
1137	 25.00	-1	1332271..1332474	+	67	18310119	-	CPE1137	-	hypothetical protein
1138	 29.95	0	1332512..1333426	+	304	18310120	-	CPE1138	-	hypothetical protein
1139	 27.80	0	1334196..1334990	-	264	18310121	-	CPE1139	-	hypothetical protein
1140	 27.08	0	1335177..1335464	+	95	18310122	-	CPE1140	-	hypothetical protein
1141	 17.45	-2	1335992..1336501	+	169	18310123	-	CPE1141	-	hypothetical protein
1142	 24.66	-1	1336950..1337537	+	195	18310124	-	CPE1142	-	hypothetical protein
1143	 23.42	-1	1337651..1337983	+	110	18310125	-	CPE1143	-	hypothetical protein
1144	 28.16	0	1338112..1339077	-	321	18310126	-	CPE1144	-	transcriptional regulator
1145	 27.76	0	1339126..1339986	-	286	18310127	citG	CPE1145	-	CitG protein
1146	 24.57	-1	1340264..1341301	+	345	18310128	citC	CPE1146	-	citrate (pro-3S)-lyase ligase
1147	 31.05	0	1341325..1341630	+	101	18310129	cilG	CPE1147	-	citrate lyase subunit gamma
1148	 33.67	+1	1341618..1342508	+	296	18310130	cilB	CPE1148	-	citrate lyase beta subunit
1149	 32.12	0	1342512..1344071	+	519	18310131	cilA	CPE1149	-	citrate lyase alpha subunit
1150	 26.71	0	1344090..1344602	+	170	18310132	-	CPE1150	-	triphosphoribosyl-dephospho-CoA synthase
1151	 32.02	0	1344643..1345788	+	381	18310133	-	CPE1151	-	malate oxidoreductase
1152	 31.92	0	1345809..1347149	+	446	18310134	citN	CPE1152	-	citrate/sodium symporter
1153	 33.56	+1	1347518..1349752	+	744	18310135	pflA	CPE1153	-	formate acetyltransferase
1154	 31.07	0	1350038..1350745	+	235	149134307	pflA	CPE1154	-	pyruvate formate-lyase activating enzyme
1155	 28.68	0	1351007..1353736	+	909	18310137	mutS	CPE1155	-	DNA mismatch repair protein
1156	 28.94	0	1353763..1355787	+	674	18310138	mutL	CPE1156	-	DNA mismatch repair protein
1157	 29.15	0	1355805..1356737	+	310	18310139	miaA	CPE1157	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1158	 28.81	0	1356781..1357023	+	80	18310140	-	CPE1158	-	RNA chaperone Hfq
1159	 31.07	0	1357128..1358408	+	426	18310141	-	CPE1159	-	aluminum resistance protein
1160	 27.81	0	1358667..1359572	+	301	18310142	-	CPE1160	-	hypothetical protein
1161	 28.92	0	1359730..1360341	-	203	18310143	lexA	CPE1161	-	LexA repressor
1162	 30.03	0	1360549..1360941	+	130	18310144	-	CPE1162	-	hypothetical protein
1163	 25.57	-1	1361032..1362384	-	450	18310145	xerC	CPE1163	-	site-specific tyrosine recombinase XerC
1164	 31.05	0	1362882..1363100	-	72	18310146	-	CPE1164	-	hypothetical protein
1165	 30.36	0	1363219..1364427	+	402	18310147	thd	CPE1165	-	threonine dehydratase, catabolic
1166	 33.20	+1	1364467..1365936	-	489	18310148	-	CPE1166	-	lysine specific permease
1167	 29.65	0	1366440..1367660	+	406	18310149	-	CPE1167	-	glutamate/ aspartate transporter
1168	 26.13	0	1367695..1368027	-	110	18310150	-	CPE1168	-	hypothetical protein
1169	 30.54	0	1368302..1368946	+	214	18310151	-	CPE1169	-	hypothetical protein
1170	 27.85	0	1368979..1369197	-	72	18310152	-	CPE1170	-	hypothetical protein
1171	 23.96	-1	1369260..1369643	-	127	18310153	-	CPE1171	-	hypothetical protein
1172	 25.85	0	1369976..1370710	-	244	18310154	-	CPE1172	-	haloacid dehalogenase, IB family protein
1173	 30.07	0	1370990..1371418	+	142	18310155	-	CPE1173	-	hypothetical protein
1174	 30.54	0	1371494..1372246	-	250	18310156	exoA	CPE1174	-	exodeoxyribonuclease III
1175	 29.39	0	1372431..1372658	+	75	18310157	-	CPE1175	-	hypothetical protein
1176	 25.30	-1	1372966..1373388	-	140	18310158	-	CPE1176	-	hypothetical protein
1177	 33.85	+1	1373711..1374289	-	192	18310159	pyrE	CPE1177	-	orotate phosphoribosyltransferase
1178	 32.56	0	1374440..1375339	-	299	18310160	pyrD	CPE1178	-	dihydroorotate dehydrogenase 1B
1179	 33.06	+1	1375359..1376099	-	246	18310161	pyrZ	CPE1179	-	dihydroorotate dehydrogenase electron transfer subunit
1180	 31.48	0	1376124..1376987	-	287	18310162	pyrF	CPE1180	-	orotidine 5'-phosphate decarboxylase
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.