IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1029	 29.20	0	1230323..1230709	-	128	18310011	-	CPE1029	-	hypothetical protein
1030	 32.99	+1	1231228..1232676	+	482	18310012	-	CPE1030	-	hypothetical protein
1031	 27.76	0	1232895..1233629	+	244	18310013	-	CPE1031	-	transcriptional regulator
1032	 30.90	0	1233841..1235157	+	438	18310014	-	CPE1032	-	amidohydrolase family protein
1033	 23.10	-1	1235303..1236103	-	266	18310015	-	CPE1033	-	choline/ethanolamine kinase family protein
1034	 30.66	0	1236168..1237253	+	361	18310016	cobT	CPE1034	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1035	 26.92	0	1237291..1237851	+	186	18310017	-	CPE1035	-	hypothetical protein
1036	 28.17	0	1237835..1238590	+	251	18310018	cobS	CPE1036	-	cobalamin synthase
1037	 26.77	0	1238604..1238984	+	126	18310019	-	CPE1037	-	hypothetical protein
1038	 30.08	0	1238989..1239633	+	214	18310020	cobC	CPE1038	-	alpha-ribazole-5'-phosphate phosphatase
1039	 29.22	0	1239636..1240583	+	315	18310021	cbiB	CPE1039	-	cobalamin biosynthesis protein
1040	 26.29	0	1240580..1241644	+	354	18310022	-	CPE1040	-	threonine-phosphate decarboxylase
1041	 30.39	0	1242218..1243135	+	305	18310023	-	CPE1041	-	iron ABC transporter
1042	 32.36	0	1243122..1244153	+	343	18310024	-	CPE1042	-	iron ABC transporter
1043	 27.42	0	1244119..1244913	+	264	18310025	-	CPE1043	-	iron(III) dicitrate transport system
1044	 30.89	0	1244923..1245576	+	217	18310026	-	CPE1044	-	hypothetical protein
1045	 29.71	0	1245586..1247049	+	487	18310027	cbiP	CPE1045	-	cobyric acid synthase CobQ
1046	 31.50	0	1247325..1253222	+	1965	18310028	-	CPE1046	-	hypothetical protein
1047	 24.44	-1	1253315..1253764	+	149	18310029	-	CPE1047	-	hypothetical protein
1048	 22.52	-1	1253987..1254430	+	147	18310030	-	CPE1048	-	hypothetical protein
1049	 23.65	-1	1254652..1255818	+	388	18310031	-	CPE1049	-	hypothetical protein
1050	 29.84	0	1256109..1256909	+	266	18310032	-	CPE1050	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1051	 28.95	0	1257260..1258444	-	394	18310033	cfa	CPE1051	-	cyclopropane-fatty-acyl-phospholipid synthase
1052	 32.52	0	1258777..1260132	+	451	18310034	-	CPE1052	-	putative thiosulfate sulfurtransferase
1053	 18.54	-2	1260136..1260561	+	141	18310035	-	CPE1053	-	hypothetical protein
1054	 25.83	0	1260786..1261025	+	79	18310036	-	CPE1054	-	hypothetical protein
1055	 25.94	0	1261234..1262004	+	256	18310037	-	CPE1055	-	endonuclease/exonuclease/phosphatase family protein
1056	 30.18	0	1262188..1263012	+	274	18310038	hisB	CPE1056	-	histidinol-phosphatase
1057	 27.99	0	1263140..1264561	-	473	18310039	-	CPE1057	-	tetratricopeptide repeat protein
1058	 29.30	0	1264921..1266582	-	553	18310040	nadE	CPE1058	-	NAD synthetase
1059	 26.57	0	1267144..1267557	+	137	18310041	-	CPE1059	-	hypothetical protein
1060	 29.65	0	1267577..1268527	+	316	18310042	-	CPE1060	-	SPFH domain protein/band 7 family protein
1061	 25.83	0	1268707..1269759	+	350	18310043	alr	CPE1061	-	alanine racemase
1062	 29.47	0	1269992..1271026	+	344	18310044	-	CPE1062	-	hypothetical protein
1063	 30.94	0	1271044..1271712	+	222	18310045	nqrD	CPE1063	-	SoxR-reducing system protein RsxE
1064	 28.99	0	1271741..1272316	+	191	18310046	nqrE	CPE1064	-	Na-translocating NADH-quinone reductase
1065	 31.23	0	1272333..1273139	+	268	18310047	-	CPE1065	-	ferredoxin
1066	 30.14	0	1273220..1273720	+	166	18310048	-	CPE1066	-	cytidine/deoxycytidylate deaminase family protein
1067	 27.74	0	1273892..1274356	+	154	18310049	-	CPE1067	-	MarR family transcriptional regulator
1068	 32.10	0	1274358..1275332	+	324	18310050	fabH	CPE1068	-	3-oxoacyl-(acyl carrier protein) synthase III
1069	 30.37	0	1275429..1276373	+	314	18310051	fabD	CPE1069	-	malonyl CoA-acyl carrier protein transacylase
1070	 30.77	0	1276377..1277117	+	246	18310052	fabG	CPE1070	-	3-ketoacyl-(acyl-carrier-protein) reductase
1071	 33.01	+1	1277132..1278373	+	413	18310053	fabF	CPE1071	-	3-oxoacyl-(acyl carrier protein) synthase II
1072	 28.25	0	1278385..1278876	+	163	18310054	accB	CPE1072	-	acetyl-CoA carboxylase biotin carboxyl carrier protein
1073	 32.14	0	1278879..1279298	+	139	18310055	fabZ	CPE1073	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1074	 31.41	0	1279310..1280662	+	450	18310056	accC	CPE1074	-	biotin carboxylase
1075	 33.05	+1	1280827..1281534	+	235	18310057	accD	CPE1075	-	acetyl-CoA carboxylase carboxyl transferase subunit beta
1076	 31.13	0	1281527..1282342	+	271	18310058	accA	CPE1076	-	acetyl-CoA carboxylase carboxyl transferase subunit alpha
1077	 29.74	0	1282443..1282832	-	129	18310059	-	CPE1077	-	PadR family transcriptional regulator
1078	 40.09	+2	1282959..1283180	+	73	18310060	-	CPE1078	-	hypothetical protein
1079	 28.41	0	1283238..1283948	-	236	18310061	-	CPE1079	-	hypothetical protein
1080	 30.10	0	1284275..1284985	+	236	18310062	-	CPE1080	-	pseudouridylate synthase
1081	 26.46	0	1284976..1285542	+	188	18310063	-	CPE1081	-	hypothetical protein
1082	 27.63	0	1285574..1286449	+	291	18310064	-	CPE1082	-	RpiR family transcriptional regulator
1083	 29.60	0	1286708..1287886	+	392	18310065	-	CPE1083	-	hypothetical protein
1084	 29.66	0	1288009..1288662	+	217	18310066	cmk	CPE1084	-	cytidylate kinase
1085	 29.09	0	1288664..1289512	+	282	18310067	lytB	CPE1085	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1086	 24.91	-1	1289622..1290416	+	264	18310068	-	CPE1086	-	hypothetical protein
1087	 28.00	0	1290516..1290665	-	49	18310069	-	CPE1087	-	hypothetical protein
1088	 26.18	0	1290802..1291374	+	190	18310070	-	CPE1088	-	hypothetical protein
1089	 17.85	-2	1291513..1291977	+	154	18310071	-	CPE1089	-	hypothetical protein
1090	 27.25	0	1292023..1292499	-	158	18310072	-	CPE1090	-	hypothetical protein
1091	 25.70	0	1292677..1293069	-	130	18310073	-	CPE1091	-	hypothetical protein
1092	 29.88	0	1293432..1294415	+	327	18310074	pac	CPE1092	-	choloylglycine hydrolase family protein
1093	 30.28	0	1294599..1295942	+	447	18310075	-	CPE1093	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1094	 31.10	0	1296398..1298011	+	537	18310076	-	CPE1094	-	phosphoenolpyruvate carboxylase
1095	 27.14	0	1298199..1299215	+	338	18310077	-	CPE1095	-	integrase/recombinase
1096	 27.00	0	1299873..1300172	+	99	18310078	-	CPE1096	-	hypothetical protein
1097	 27.23	0	1300313..1300525	-	70	18310079	-	CPE1097	-	transcriptional regulator
1098	 24.73	-1	1300712..1301176	+	154	18310080	-	CPE1098	-	hypothetical protein
1099	 29.04	0	1301201..1301503	+	100	18310081	-	CPE1099	-	hypothetical protein
1100	 23.81	-1	1301594..1302286	+	230	18310082	-	CPE1100	-	hypothetical protein
1101	 27.78	0	1302323..1302556	+	77	18310083	-	CPE1101	-	hypothetical protein
1102	 27.80	0	1302601..1303431	+	276	18310084	-	CPE1102	-	hypothetical protein
1103	 27.61	0	1303501..1306695	+	1064	18310085	-	CPE1103	-	hypothetical protein
1104	 31.02	0	1306795..1307226	+	143	18310086	-	CPE1104	-	hypothetical protein
1105	 31.46	0	1307241..1307561	+	106	18310087	-	CPE1105	-	hypothetical protein
1106	 22.22	-1	1307575..1307745	+	56	18310088	-	CPE1106	-	hypothetical protein
1107	 26.38	0	1307775..1308695	+	306	18310089	-	CPE1107	-	hypothetical protein
1108	 28.96	0	1309065..1309247	+	60	18310090	-	CPE1108	-	hypothetical protein
1109	 23.25	-1	1309449..1309904	+	151	18310091	-	CPE1109	-	hypothetical protein
1110	 27.78	0	1310119..1311216	+	365	18310092	-	CPE1110	-	hypothetical protein
1111	 20.75	-2	1311231..1311389	+	52	18310093	-	CPE1111	-	hypothetical protein
1112	 22.47	-1	1311383..1311649	+	88	18310094	-	CPE1112	-	hypothetical protein
1113	 28.65	0	1311688..1312071	+	127	18310095	-	CPE1113	-	hypothetical protein
1114	 27.22	0	1312073..1312252	+	59	18310096	-	CPE1114	-	hypothetical protein
1115	 21.40	-2	1312258..1312500	+	80	18310097	-	CPE1115	-	hypothetical protein
1116	 28.22	0	1312560..1312970	+	136	18310098	-	CPE1116	-	hypothetical protein
1117	 28.89	0	1312983..1313567	+	194	18310099	-	CPE1117	-	hypothetical protein
1118	 27.61	0	1313567..1315243	+	558	18310100	-	CPE1118	-	phage-related terminase
1119	 18.97	-2	1315252..1315425	+	57	18310101	-	CPE1119	-	hypothetical protein
1120	 26.96	0	1315442..1316665	+	407	18310102	-	CPE1120	-	hypothetical protein
1121	 27.69	0	1316640..1317242	+	200	18310103	-	CPE1121	-	phage phi-C31 gp35-like protein
1122	 28.85	0	1317279..1318415	+	378	18310104	-	CPE1122	-	phage-related head protein
1123	 25.51	-1	1318478..1318771	+	97	18310105	-	CPE1123	-	hypothetical protein
1124	 29.87	0	1318764..1319081	+	105	18310106	-	CPE1124	-	hypothetical protein
1125	 31.76	0	1319082..1319525	+	147	18310107	-	CPE1125	-	hypothetical protein
1126	 26.78	0	1319535..1319885	+	116	18310108	-	CPE1126	-	hypothetical protein
1127	 32.00	0	1319901..1320500	+	199	18310109	-	CPE1127	-	hypothetical protein
1128	 26.14	0	1320548..1320853	+	101	18310110	-	CPE1128	-	hypothetical protein
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.