IslandPath Analysis: Clostridium perfringens str. 13



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.13   STD DEV: 3.46
Clostridium perfringens str. 13, complete genome - 1..3031430
2660 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
964	 23.39	-1	1161203..1161373	+	56	18309946	-	CPE0964	-	hypothetical protein
965	 21.61	-2	1161697..1163334	-	545	18309947	-	CPE0965	-	GGDEF domain protein
966	 27.50	0	1163773..1164252	+	159	18309948	-	CPE0966	-	hypothetical protein
967	 30.67	0	1164789..1165952	+	387	18309949	-	CPE0967	-	glutamate/ aspartate transporter
968	 21.29	-2	1166285..1167280	+	331	18309950	-	CPE0968	-	hypothetical protein
969	 24.80	-1	1167573..1169483	+	636	18309951	-	CPE0969	-	hypothetical protein
970	 30.10	0	1169513..1170967	-	484	18309952	-	CPE0970	-	Na+/H+ antiporter
971	 22.71	-1	1170996..1171616	-	206	18309953	-	CPE0971	-	hypothetical protein
972	 29.52	0	1171854..1172639	+	261	18309954	hisB	CPE0972	-	histidinol phosphatase
973	 28.07	0	1172822..1172992	-	56	18309955	-	CPE0973	-	hypothetical protein
974	 27.65	0	1173309..1174328	-	339	18309956	-	CPE0974	-	hypothetical protein
975	 30.60	0	1174529..1176469	+	646	18309957	-	CPE0975	-	tetracycline resistant protein
976	 23.16	-1	1176634..1176987	+	117	18309958	-	CPE0976	-	hypothetical protein
977	 27.55	0	1177094..1178044	-	316	18309959	-	CPE0977	-	hypothetical protein
978	 29.56	0	1178435..1179097	-	220	18309960	-	CPE0978	-	hypothetical protein
979	 29.24	0	1179675..1180187	-	170	18309961	-	CPE0979	-	ferritin family protein
980	 22.59	-1	1180337..1181155	-	272	18309962	-	CPE0980	-	transcriptional regulator
981	 29.24	0	1181316..1183148	+	610	18309963	-	CPE0981	-	glycosyl hydrolase, family 20
982	 32.26	0	1183266..1183733	+	155	18309964	-	CPE0982	-	hypothetical protein
983	 32.18	0	1183854..1184630	-	258	18309965	-	CPE0983	-	hypothetical protein
984	 30.73	0	1184746..1186167	-	473	18309966	spoVAF	CPE0984	-	stage V sporulation protein AF
985	 31.21	0	1186397..1187905	-	502	18309967	-	CPE0985	-	hypothetical protein
986	 25.32	-1	1188307..1190178	+	623	18309968	-	CPE0986	-	two-component sensor histidine kinase
987	 32.87	+1	1190402..1191469	+	355	18309969	pfoS	CPE0987	-	regulatory protein
988	 32.60	+1	1191501..1192181	+	226	18309970	sdhB	CPE0988	-	L-serine dehydratase beta subunit
989	 35.95	+1	1192185..1193063	+	292	18309971	sdhA	CPE0989	-	L-serine dehydratase alpha subunit
990	 29.12	0	1193131..1193865	-	244	18309972	-	CPE0990	-	hypothetical protein
991	 28.25	0	1194072..1194818	+	248	18309973	truA	CPE0991	-	tRNA pseudouridine synthase A
992	 31.27	0	1194885..1195952	-	355	18309974	-	CPE0992	-	oxidoreductase, 2-nitropropane dioxygenase family
993	 28.83	0	1196153..1196863	+	236	18309975	-	CPE0993	-	transcriptional regulator
994	 28.07	0	1196919..1197830	-	303	18309976	-	CPE0994	-	radical SAM domain protein
995	 32.08	0	1197974..1199008	+	344	18309977	-	CPE0995	-	glucanase
996	 25.89	0	1199327..1199998	+	223	18309978	-	CPE0996	-	hypothetical protein
997	 25.65	-1	1200014..1201693	+	559	18309979	-	CPE0997	-	hypothetical protein
998	 31.08	0	1202355..1203995	+	546	18309980	gltX	CPE0998	-	glutamyl-tRNA synthetase
999	 34.62	+1	1204190..1204345	+	51	18309981	-	CPE0999	-	hypothetical protein
1000	 27.48	0	1204572..1205186	+	204	18309982	-	CPE1000	-	hypothetical protein
1001	 30.81	0	1205280..1206902	-	540	18309983	-	CPE1001	-	aspartate aminotransferase
1002	 23.17	-1	1207034..1208056	-	340	18309984	-	CPE1002	-	hypothetical protein
1003	 25.56	-1	1208361..1208540	+	59	18309985	-	CPE1003	-	hypothetical protein
1004	 30.84	0	1208552..1209475	+	307	18309986	hprK	CPE1004	-	HPr kinase/phosphorylase
1005	 24.19	-1	1209520..1210449	+	309	18309987	-	CPE1005	-	divalent cation transporter
1006	 31.27	0	1210516..1211922	+	468	18309988	-	CPE1006	-	putative aminopeptidase 1
1007	 21.26	-2	1212047..1212634	+	195	18309989	-	CPE1007	-	hypothetical protein
1008	 24.88	-1	1212707..1213570	+	287	18309990	-	CPE1008	-	hypothetical protein
1009	 34.44	+1	1213738..1214097	+	119	18309991	mgsA	CPE1009	-	methylglyoxal synthase
1010	 22.92	-1	1214278..1214613	+	111	18309992	-	CPE1010	-	hypothetical protein
1011	 28.35	0	1214739..1214999	+	86	18309993	-	CPE1011	-	hypothetical protein
1012	 31.50	0	1215083..1215463	+	126	18309994	-	CPE1012	-	putative endoribonuclease L-PSP
1013	 30.89	0	1215507..1215752	+	81	18309995	-	CPE1013	-	hypothetical protein
1014	 30.00	0	1215859..1218495	-	878	18309996	-	CPE1014	-	rubredoxin/flavodoxin/oxidoreductase
1015	 29.66	0	1218700..1219542	-	280	18309997	-	CPE1015	-	hypothetical protein
1016	 29.44	0	1219810..1220400	+	196	18309998	pabA	CPE1016	-	anthranilate synthase component II
1017	 27.32	0	1220406..1221752	+	448	18309999	pabB	CPE1017	-	para-aminobenzoate synthase, component I
1018	 26.53	0	1221806..1222540	+	244	18310000	-	CPE1018	-	4-amino-4-deoxychorismate lyase
1019	 32.26	0	1222555..1223112	+	185	18310001	folE	CPE1019	-	GTP cyclohydrolase I
1020	 26.37	0	1223137..1223610	+	157	18310002	-	CPE1020	-	hypothetical protein
1021	 32.72	+1	1223623..1224432	+	269	18310003	folP	CPE1021	-	dihydropteroate synthase
1022	 28.10	0	1224445..1225266	+	273	18310004	folA/folK	CPE1022	-	dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1023	 22.29	-1	1225337..1225807	-	156	18310005	-	CPE1023	-	hypothetical protein
1024	 22.22	-1	1225922..1226362	+	146	18310006	-	CPE1024	-	hypothetical protein
1025	 26.48	0	1226692..1227786	+	364	18310007	pykA	CPE1025	-	pyruvate kinase
1026	 26.52	0	1227783..1228340	-	185	18310008	-	CPE1026	-	hypothetical protein
1027	 27.69	0	1228514..1229965	+	483	18310009	-	CPE1027	-	hypothetical protein
1028	 26.32	0	1229962..1230303	-	113	18310010	-	CPE1028	-	hypothetical protein
1029	 29.20	0	1230323..1230709	-	128	18310011	-	CPE1029	-	hypothetical protein
1030	 32.99	+1	1231228..1232676	+	482	18310012	-	CPE1030	-	hypothetical protein
1031	 27.76	0	1232895..1233629	+	244	18310013	-	CPE1031	-	transcriptional regulator
1032	 30.90	0	1233841..1235157	+	438	18310014	-	CPE1032	-	amidohydrolase family protein
1033	 23.10	-1	1235303..1236103	-	266	18310015	-	CPE1033	-	choline/ethanolamine kinase family protein
1034	 30.66	0	1236168..1237253	+	361	18310016	cobT	CPE1034	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1035	 26.92	0	1237291..1237851	+	186	18310017	-	CPE1035	-	hypothetical protein
1036	 28.17	0	1237835..1238590	+	251	18310018	cobS	CPE1036	-	cobalamin synthase
1037	 26.77	0	1238604..1238984	+	126	18310019	-	CPE1037	-	hypothetical protein
1038	 30.08	0	1238989..1239633	+	214	18310020	cobC	CPE1038	-	alpha-ribazole-5'-phosphate phosphatase
1039	 29.22	0	1239636..1240583	+	315	18310021	cbiB	CPE1039	-	cobalamin biosynthesis protein
1040	 26.29	0	1240580..1241644	+	354	18310022	-	CPE1040	-	threonine-phosphate decarboxylase
1041	 30.39	0	1242218..1243135	+	305	18310023	-	CPE1041	-	iron ABC transporter
1042	 32.36	0	1243122..1244153	+	343	18310024	-	CPE1042	-	iron ABC transporter
1043	 27.42	0	1244119..1244913	+	264	18310025	-	CPE1043	-	iron(III) dicitrate transport system
1044	 30.89	0	1244923..1245576	+	217	18310026	-	CPE1044	-	hypothetical protein
1045	 29.71	0	1245586..1247049	+	487	18310027	cbiP	CPE1045	-	cobyric acid synthase CobQ
1046	 31.50	0	1247325..1253222	+	1965	18310028	-	CPE1046	-	hypothetical protein
1047	 24.44	-1	1253315..1253764	+	149	18310029	-	CPE1047	-	hypothetical protein
1048	 22.52	-1	1253987..1254430	+	147	18310030	-	CPE1048	-	hypothetical protein
1049	 23.65	-1	1254652..1255818	+	388	18310031	-	CPE1049	-	hypothetical protein
1050	 29.84	0	1256109..1256909	+	266	18310032	-	CPE1050	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1051	 28.95	0	1257260..1258444	-	394	18310033	cfa	CPE1051	-	cyclopropane-fatty-acyl-phospholipid synthase
1052	 32.52	0	1258777..1260132	+	451	18310034	-	CPE1052	-	putative thiosulfate sulfurtransferase
1053	 18.54	-2	1260136..1260561	+	141	18310035	-	CPE1053	-	hypothetical protein
1054	 25.83	0	1260786..1261025	+	79	18310036	-	CPE1054	-	hypothetical protein
1055	 25.94	0	1261234..1262004	+	256	18310037	-	CPE1055	-	endonuclease/exonuclease/phosphatase family protein
1056	 30.18	0	1262188..1263012	+	274	18310038	hisB	CPE1056	-	histidinol-phosphatase
1057	 27.99	0	1263140..1264561	-	473	18310039	-	CPE1057	-	tetratricopeptide repeat protein
1058	 29.30	0	1264921..1266582	-	553	18310040	nadE	CPE1058	-	NAD synthetase
1059	 26.57	0	1267144..1267557	+	137	18310041	-	CPE1059	-	hypothetical protein
1060	 29.65	0	1267577..1268527	+	316	18310042	-	CPE1060	-	SPFH domain protein/band 7 family protein
1061	 25.83	0	1268707..1269759	+	350	18310043	alr	CPE1061	-	alanine racemase
1062	 29.47	0	1269992..1271026	+	344	18310044	-	CPE1062	-	hypothetical protein
1063	 30.94	0	1271044..1271712	+	222	18310045	nqrD	CPE1063	-	SoxR-reducing system protein RsxE
29.13	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.