IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
921	 70.49	0	1059422..1059604	+	60	148272099	-	CMM_0920	-	hypothetical protein
922	 75.48	0	1059604..1060068	+	154	148272100	-	CMM_0921	-	putative endoribonuclease, putative translation initiation inhibitor
923	 72.65	0	1060150..1062189	-	679	148272101	acsA1	CMM_0922	-	acetyl-coenzyme A synthetase
924	 77.91	+1	1062551..1063795	+	414	148272102	-	CMM_0923	-	hypothetical protein
925	 77.88	+1	1063792..1064817	+	341	148272103	-	CMM_0924	-	hypothetical protein
926	 76.76	+1	1064943..1065368	+	141	148272104	-	CMM_0925	-	hypothetical protein
927	 77.36	+1	1065365..1065766	+	133	148272105	-	CMM_0925A	-	hypothetical protein
928	 79.72	+1	1065756..1066115	+	119	148272106	-	CMM_0926	-	hypothetical protein
929	 70.36	0	1066457..1069411	+	984	148272107	topA	CMM_0927	-	DNA topoisomerase I
930	 75.31	0	1069408..1070043	+	211	148272108	tmkA	CMM_0928	-	hypothetical protein
931	 75.66	0	1070040..1071284	+	414	148272109	holB	CMM_0929	-	DNA polymerase III subunit delta'
932	 73.57	0	1071281..1072858	+	525	148272110	-	CMM_0930	-	hypothetical protein
933	 74.39	0	1073336..1074694	+	452	148272111	pbpE	CMM_0931	-	D-alanyl-D-alanine carboxypeptidase
934	 73.60	0	1074759..1075349	+	196	148272112	pncA	CMM_0932	-	putative pyrazinamidase / nicotinamidase
935	 73.24	0	1075427..1076902	+	491	148272113	gabD	CMM_0933	-	putative succinate-semialdehyde dehydrogenase
936	 75.41	0	1076902..1077702	+	266	148272114	-	CMM_0934	-	putative tRNA/rRNA methyltransferase
937	 71.26	0	1077769..1078116	+	115	148272115	-	CMM_0935	-	hypothetical protein
938	 73.71	0	1078250..1078618	+	122	148272116	-	CMM_0936	-	hypothetical protein
939	 73.50	0	1078702..1080633	-	643	148272117	-	CMM_0937	-	putative multidrug export ABC transporter, fused permease and ATP-binding protein
940	 71.41	0	1080838..1081764	+	308	148272118	-	CMM_0938	-	putative multidrug export ABC transporter, ATP-binding protein
941	 70.02	0	1081761..1082594	+	277	148272119	-	CMM_0939	-	putative multidrug export ABC transporter,permease component
942	 68.80	-1	1082591..1083433	+	280	148272120	-	CMM_0940	-	putative multidrug export ABC transporter,permease component
943	 76.59	0	1083396..1084745	-	449	148272121	-	CMM_0941	-	MFS family transporter
944	 77.02	+1	1084888..1085718	+	276	148272122	-	CMM_0942	-	hypothetical protein
945	 72.01	0	1085724..1086191	+	155	148272123	-	CMM_0943	-	hypothetical protein
946	 71.16	0	1086418..1087686	+	422	148272124	-	CMM_0944	-	putative sugar ABC transporter, substrate-binding protein
947	 69.96	0	1087690..1088631	+	313	148272125	-	CMM_0945	-	putative sugar ABC transporter, permease component
948	 68.86	0	1088643..1089554	+	303	148272126	-	CMM_0946	-	putative sugar ABC transporter, permease component
949	 73.91	0	1089587..1091449	+	620	148272127	-	CMM_0947	-	putative beta-glycosidase
950	 74.91	0	1091558..1092697	+	379	148272128	-	CMM_0948	-	LacI family transcriptional regulator
951	 76.67	0	1092708..1092917	-	69	148272129	-	CMM_0949	-	hypothetical protein
952	 74.05	0	1092917..1093471	-	184	148272130	-	CMM_0950	-	hypothetical protein
953	 76.88	+1	1093591..1094295	+	234	148272131	-	CMM_0951	-	hypothetical protein
954	 73.21	0	1094342..1095748	-	468	148272132	-	CMM_0952	-	putative MFS permease
955	 69.99	0	1095854..1097269	-	471	148272133	-	CMM_0953	-	putative MFS permease
956	 76.43	0	1097486..1097782	+	98	148272134	-	CMM_0954	-	hypothetical protein
957	 79.26	+1	1097779..1099572	-	597	148272135	-	CMM_0955	-	putative peptide ABC transporter, permease compound
958	 76.72	+1	1099572..1101113	-	513	148272136	-	CMM_0956	-	putative peptide ABC transporter, substrate-binding protein
959	 77.75	+1	1101103..1102527	-	474	148272137	-	CMM_0957	-	putative MFS permease
960	 78.74	+1	1102524..1103351	-	275	148272138	-	CMM_0958	-	putative peptide ABC transporter, ATP-binding protein
961	 78.75	+1	1103348..1104208	-	286	148272139	-	CMM_0959	-	putative peptide ABC transporter, ATP-binding protein
962	 75.57	0	1104310..1104792	-	160	148272140	ribH	CMM_0960	-	riboflavin synthase subunit beta
963	 73.18	0	1104789..1106123	-	444	148272141	ribAB	CMM_0961	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
964	 73.97	0	1106120..1106776	-	218	148272142	ribC	CMM_0962	-	riboflavin synthase subunit alpha
965	 78.71	+1	1106776..1107846	-	356	148272143	ribD	CMM_0963	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
966	 76.47	0	1108127..1108891	-	254	148272144	-	CMM_0964	-	putative hydrolase
967	 70.32	0	1108888..1109901	-	337	148272145	trpS	CMM_0965	-	tryptophanyl-tRNA synthetase
968	 71.75	0	1109984..1110829	-	281	148272146	xthA	CMM_0966	-	putative exonuclease III
969	 73.06	0	1110840..1111949	-	369	148272147	-	CMM_0967	-	membrane protein, putative ribonuclease
970	 77.17	+1	1112074..1113729	+	551	148272148	ptsA	CMM_0968	-	phosphoenolpyruvate--protein phosphatase
971	 66.93	-1	1113818..1114579	-	253	148272149	sdhB	CMM_0969	-	succinate dehydrogenase iron-sulfur subunit
972	 67.87	-1	1114637..1116460	-	607	148272150	sdhA	CMM_0970	-	succinate dehydrogenase flavoprotein subunit
973	 68.17	-1	1116493..1116957	-	154	148272151	sdhD	CMM_0971	-	putative succinate dehydrogenase, hydrophobic membrane subunit
974	 65.29	-1	1116960..1117394	-	144	148272152	sdhC	CMM_0972	-	succinate dehydrogenase, cytochrome b subunit
975	 76.72	+1	1117535..1118728	-	397	148272153	-	CMM_0973	-	putative mannosyl transferase
976	 71.93	0	1118828..1119949	+	373	148272154	manC	CMM_0974	-	hypothetical protein
977	 71.88	0	1120024..1121097	+	357	148272155	-	CMM_0975	-	putative ABC transporter, substrate-binding protein
978	 68.13	-1	1121248..1122342	+	364	148272156	-	CMM_0976	-	putative ABC transporter, substrate-binding protein
979	 71.27	0	1122424..1123965	+	513	148272157	-	CMM_0977	-	putative sugar ABC transporter, ATPase component
980	 72.98	0	1123962..1125338	+	458	148272158	-	CMM_0978	-	putative sugar ABC transporter, permease component
981	 71.19	0	1125335..1126639	+	434	148272159	-	CMM_0979	-	putative sugar ABC transporter, permease component
982	 72.81	0	1126645..1127067	+	140	148272160	cddA	CMM_0980	-	cytidine deaminase
983	 74.21	0	1127064..1128362	+	432	148272161	deoA	CMM_0981	-	thymidine phosphorylase
984	 73.61	0	1128418..1129353	-	311	148272162	iunH	CMM_0982	-	inosine-uridine preferring nucleoside hydrolase
985	 72.56	0	1129456..1130574	+	372	148272163	addA	CMM_0983	-	adenosine deaminase
986	 74.00	0	1130643..1131092	+	149	148272164	-	CMM_0984	-	phosphotransferase system mannitol/fructose-specific IIA component
987	 69.23	0	1131089..1131361	+	90	148272165	-	CMM_0985	-	hypothetical protein
988	 76.06	0	1131310..1132320	-	336	148272166	-	CMM_0986	-	hypothetical protein
989	 77.19	+1	1132317..1132943	-	208	148272167	-	CMM_0987	-	MerR family transcriptional regulator
990	 73.53	0	1133031..1134734	-	567	148272168	manB	CMM_0988	-	putative phosphomannomutase
991	 72.58	0	1134731..1135558	-	275	148272169	punA	CMM_0989	-	purine nucleoside phosphorylase
992	 71.59	0	1135649..1137091	+	480	148272170	lpdA	CMM_0990	-	flavoprotein disulfide reductase
993	 73.33	0	1137170..1138939	-	589	148272171	accA	CMM_0991	-	acetyl/propionyl CoA carboxylase subunit
994	 76.89	+1	1139062..1139589	+	175	148272172	-	CMM_0992	-	hypothetical protein
995	 76.04	0	1139611..1140282	-	223	148272173	-	CMM_0993	-	hypothetical protein
996	 73.85	0	1140337..1141602	+	421	148272174	-	CMM_0994	-	putative RNA methyltransferase
997	 73.05	0	1141702..1142406	+	234	148272175	-	CMM_0995	-	putative two component system, response regulator
998	 74.16	0	1142396..1143742	+	448	148272176	-	CMM_0996	-	putative two-component system, sensor kinase
999	 74.00	0	1143739..1144761	+	340	148272177	-	CMM_0997	-	hypothetical protein
1000	 80.34	+1	1145049..1145282	-	77	148272178	-	CMM_0998	-	hypothetical protein
1001	 69.27	0	1145279..1146892	-	537	148272179	accD	CMM_0999	-	putative acetyl/propionyl-CoA carboxylase beta chain
1002	 77.01	+1	1147000..1147782	+	260	148272180	-	CMM_1000	-	putative lipoate protein ligase
1003	 75.35	0	1147786..1148580	+	264	148272181	-	CMM_1001	-	hypothetical protein
1004	 72.45	0	1148600..1149118	-	172	148272182	-	CMM_1002	-	hypothetical protein
1005	 74.91	0	1149255..1150382	+	375	148272183	purK	CMM_1003	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1006	 72.57	0	1150437..1150961	+	174	148272184	purE	CMM_1004	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1007	 70.89	0	1150958..1152307	+	449	148272185	-	CMM_1005	-	putative transcriptional regulator
1008	 75.19	0	1152323..1153507	-	394	148272186	wcqB	CMM_1006	-	putative glycosyltransferase,mannosyltransferase
1009	 66.53	-1	1153554..1154300	-	248	148272187	wzt	CMM_1007	-	putative polysaccharide ABC transporter, ATP-binding protein
1010	 65.63	-1	1154284..1155153	-	289	148272188	wzm	CMM_1008	-	putative polysaccharide ABC-transporter,permease component
1011	 76.49	0	1155248..1156102	-	284	148272189	rmlD	CMM_1009	-	putative dTDP-4-dehydrorhamnose reductase
1012	 69.39	0	1156099..1157088	-	329	148272190	rmlB	CMM_1010	-	putative dTDP-glucose 4,6-dehydratase
1013	 73.73	0	1157269..1157721	+	150	148272191	wcqC	CMM_1011	-	putative sugar translocase
1014	 70.96	0	1157747..1158352	+	201	148272192	rmlC	CMM_1012	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1015	 67.13	-1	1158356..1159219	+	287	148272193	rmlA	CMM_1013	-	putative glucose-1-phosphate thymidylyltransferase
1016	 76.58	0	1159283..1160260	-	325	148272194	wcqD	CMM_1014	-	putative NDP-sugar-epimerase
1017	 71.61	0	1160257..1161288	-	343	148272195	wcqE	CMM_1015	-	putative glycosyl transferase
1018	 73.10	0	1161285..1162139	-	284	148272196	wcqF	CMM_1016	-	putative glycosyl transferase
1019	 72.36	0	1162412..1164625	+	737	148272197	wcqG	CMM_1017	-	hypothetical protein
1020	 75.49	0	1164622..1165584	+	320	148272198	wcqH	CMM_1018	-	putative glycosyltransferase
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.