IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
858	 68.02	-1	976162..978672	+	836	148272036	clpC	CMM_0857	-	ATP-dependent protease, ATPase subunit
859	 69.26	0	978839..979726	+	295	148272037	galE2	CMM_0858	-	putative UDP-glucose 4-epimerase
860	 71.06	0	979723..980700	+	325	148272038	-	CMM_0859	-	putative oxidoreductase
861	 66.28	-1	981002..981517	+	171	148272039	rplJ	CMM_0860	-	50S ribosomal protein L10
862	 68.49	-1	981593..981976	+	127	148272040	rplL	CMM_0861	-	50S ribosomal protein L7/L12
863	 76.05	0	982055..983674	-	539	148272041	-	CMM_0862	-	putative transcriptional regulator
864	 76.46	0	983800..984279	+	159	148272042	-	CMM_0863	-	MarR family transcriptional regulator
865	 73.07	0	984361..985593	+	410	148272043	-	CMM_0864	-	putative multidrug efflux MFS permease
866	 73.14	0	985636..986655	-	339	148272044	-	CMM_0865	-	LacI family transcription regulator
867	 68.42	-1	986970..988334	+	454	148272045	-	CMM_0866	-	putative alpha-glucoside ABC transporter,substrate-binding protein
868	 64.61	-2	988471..989442	+	323	148272046	-	CMM_0867	-	putative alpha-glucoside ABC transporter,permease component
869	 68.79	-1	989439..990428	+	329	148272047	-	CMM_0868	-	putative alpha-glucoside ABC transport system,permease component
870	 71.29	0	990551..992431	+	626	148272048	-	CMM_0869	-	ABC transporter permease/ATPase
871	 71.35	0	992488..993255	-	255	148272049	-	CMM_0870	-	hypothetical protein
872	 70.70	0	993258..994001	-	247	148272050	-	CMM_0871	-	hypothetical protein
873	 70.55	0	994171..995535	+	454	148272051	cysB	CMM_0872	-	putative cystathionine beta-synthase
874	 71.53	0	995583..996755	+	390	148272052	metB	CMM_0873	-	cystathionine gamma-synthase
875	 74.18	0	996801..997559	-	252	148272053	rnhA	CMM_0874	-	ribonuclease H
876	 73.41	0	997737..998759	+	340	148272054	-	CMM_0875	-	LacI family transcriptional regulator
877	 72.01	0	998939..1000642	+	567	148272055	araB	CMM_0876	-	ribulokinase
878	 71.03	0	1000639..1001349	+	236	148272056	araD	CMM_0877	-	L-ribulose-5-phosphate 4-epimerase
879	 70.03	0	1001346..1002863	+	505	148272057	araA	CMM_0878	-	L-arabinose isomerase
880	 66.76	-1	1002940..1004070	+	376	148272058	-	CMM_0879	-	putative sugar ABC transporter, substrate-binding protein
881	 65.62	-1	1004248..1005777	+	509	148272059	-	CMM_0880	-	putative sugar ABC transporter, ATPase component
882	 66.67	-1	1005783..1006970	+	395	148272060	-	CMM_0881	-	putative sugar ABC transporter, permease component
883	 69.01	0	1007319..1008512	-	397	148272061	xylA	CMM_0882	-	xylose isomerase
884	 73.12	0	1008717..1010219	+	500	148272062	bglJ	CMM_0883	-	beta-glucosidase
885	 77.25	+1	1010216..1010782	+	188	148272063	-	CMM_0884	-	putative acetyltransferase
886	 70.78	0	1010813..1011250	-	145	148272064	-	CMM_0885	-	MarR family transcriptional regulator
887	 71.43	0	1011375..1011710	-	111	148272065	-	CMM_0886	-	hypothetical protein
888	 78.89	+1	1011839..1012795	-	318	148272066	-	CMM_0887	-	hypothetical protein
889	 75.76	0	1012877..1013932	+	351	148272067	-	CMM_0888	-	hypothetical protein
890	 70.47	0	1014064..1015299	+	411	148272068	-	CMM_0889	-	putative MFS-type efflux transporter
891	 75.98	0	1015340..1016434	+	364	148272069	-	CMM_0890	-	hypothetical protein
892	 80.07	+1	1016431..1017318	-	295	148272070	strB	CMM_0891	-	putative streptomycin phosphotransferase
893	 73.58	0	1017315..1017965	-	216	148272071	-	CMM_0892	-	hypothetical protein
894	 75.73	0	1018383..1021241	-	952	148272072	-	CMM_0893	-	LuxR family transcriptional regulator
895	 73.55	0	1021575..1022228	-	217	148272073	-	CMM_0894	-	putative nucleoside-diphosphate-sugar epimerase
896	 71.72	0	1022461..1024578	+	705	148272074	ptaA	CMM_0895	-	phosphate acetyltransferase
897	 72.71	0	1024644..1025834	+	396	148272075	ackA	CMM_0896	-	hypothetical protein
898	 73.10	0	1026122..1031185	+	1687	148272076	-	CMM_0897	-	hypothetical protein
899	 70.42	0	1031353..1032204	+	283	148272077	-	CMM_0898	-	hypothetical protein
900	 72.52	0	1032201..1033412	+	403	148272078	-	CMM_0899	-	hypothetical protein
901	 76.46	0	1033458..1035938	+	826	148272079	-	CMM_0900	-	DNA polymerase III subunits gamma and tau
902	 70.00	0	1035945..1036544	+	199	148272080	recR	CMM_0901	-	recombination protein RecR
903	 70.22	0	1036654..1037919	+	421	148272081	lysC	CMM_0902	-	aspartate kinase
904	 74.41	0	1037969..1039066	+	365	148272082	asdA	CMM_0903	-	aspartate-semialdehyde dehydrogenase
905	 67.68	-1	1039154..1040632	+	492	148272083	mqoA	CMM_0904	-	malate:quinone oxidoreductase
906	 73.67	0	1040702..1041886	+	394	148272084	-	CMM_0905	-	hypothetical protein
907	 75.68	0	1041957..1042655	+	232	148272085	-	CMM_0906	-	putative two-component system, response regulator
908	 69.63	0	1042656..1043330	+	224	148272086	tdkA	CMM_0907	-	thymidine kinase
909	 71.61	0	1043686..1045080	+	464	148272087	-	CMM_0908	-	putative tyrosine-protein kinase
910	 76.87	+1	1045419..1046369	+	316	148272088	-	CMM_0909	-	hypothetical protein
911	 72.32	0	1046366..1048186	+	606	148272089	-	CMM_0910	-	hypothetical protein
912	 73.68	0	1048274..1048858	+	194	148272090	-	CMM_0911	-	hypothetical protein
913	 77.16	+1	1049131..1049721	+	196	148272091	-	CMM_0912	-	hypothetical protein
914	 75.19	0	1049761..1050288	-	175	148272092	-	CMM_0913	-	hypothetical protein
915	 75.25	0	1050375..1051388	+	337	148272093	-	CMM_0914	-	putative flavin-dependent oxidoreductase/monooxygenase
916	 67.87	-1	1051481..1053715	+	744	148272094	pbpC	CMM_0915	-	putative penicillin-binding protein
917	 73.30	0	1053861..1055141	+	426	148272095	-	CMM_0916	-	putative acyltransferase
918	 70.64	0	1055138..1055590	+	150	148272096	-	CMM_0917	-	hypothetical protein
919	 71.01	0	1055835..1056779	-	314	148272097	-	CMM_0918	-	putative phosphohydrolase
920	 68.36	-1	1056779..1059316	-	845	148272098	pbpD	CMM_0919	-	putative penicillin-binding protein
921	 70.49	0	1059422..1059604	+	60	148272099	-	CMM_0920	-	hypothetical protein
922	 75.48	0	1059604..1060068	+	154	148272100	-	CMM_0921	-	putative endoribonuclease, putative translation initiation inhibitor
923	 72.65	0	1060150..1062189	-	679	148272101	acsA1	CMM_0922	-	acetyl-coenzyme A synthetase
924	 77.91	+1	1062551..1063795	+	414	148272102	-	CMM_0923	-	hypothetical protein
925	 77.88	+1	1063792..1064817	+	341	148272103	-	CMM_0924	-	hypothetical protein
926	 76.76	+1	1064943..1065368	+	141	148272104	-	CMM_0925	-	hypothetical protein
927	 77.36	+1	1065365..1065766	+	133	148272105	-	CMM_0925A	-	hypothetical protein
928	 79.72	+1	1065756..1066115	+	119	148272106	-	CMM_0926	-	hypothetical protein
929	 70.36	0	1066457..1069411	+	984	148272107	topA	CMM_0927	-	DNA topoisomerase I
930	 75.31	0	1069408..1070043	+	211	148272108	tmkA	CMM_0928	-	hypothetical protein
931	 75.66	0	1070040..1071284	+	414	148272109	holB	CMM_0929	-	DNA polymerase III subunit delta'
932	 73.57	0	1071281..1072858	+	525	148272110	-	CMM_0930	-	hypothetical protein
933	 74.39	0	1073336..1074694	+	452	148272111	pbpE	CMM_0931	-	D-alanyl-D-alanine carboxypeptidase
934	 73.60	0	1074759..1075349	+	196	148272112	pncA	CMM_0932	-	putative pyrazinamidase / nicotinamidase
935	 73.24	0	1075427..1076902	+	491	148272113	gabD	CMM_0933	-	putative succinate-semialdehyde dehydrogenase
936	 75.41	0	1076902..1077702	+	266	148272114	-	CMM_0934	-	putative tRNA/rRNA methyltransferase
937	 71.26	0	1077769..1078116	+	115	148272115	-	CMM_0935	-	hypothetical protein
938	 73.71	0	1078250..1078618	+	122	148272116	-	CMM_0936	-	hypothetical protein
939	 73.50	0	1078702..1080633	-	643	148272117	-	CMM_0937	-	putative multidrug export ABC transporter, fused permease and ATP-binding protein
940	 71.41	0	1080838..1081764	+	308	148272118	-	CMM_0938	-	putative multidrug export ABC transporter, ATP-binding protein
941	 70.02	0	1081761..1082594	+	277	148272119	-	CMM_0939	-	putative multidrug export ABC transporter,permease component
942	 68.80	-1	1082591..1083433	+	280	148272120	-	CMM_0940	-	putative multidrug export ABC transporter,permease component
943	 76.59	0	1083396..1084745	-	449	148272121	-	CMM_0941	-	MFS family transporter
944	 77.02	+1	1084888..1085718	+	276	148272122	-	CMM_0942	-	hypothetical protein
945	 72.01	0	1085724..1086191	+	155	148272123	-	CMM_0943	-	hypothetical protein
946	 71.16	0	1086418..1087686	+	422	148272124	-	CMM_0944	-	putative sugar ABC transporter, substrate-binding protein
947	 69.96	0	1087690..1088631	+	313	148272125	-	CMM_0945	-	putative sugar ABC transporter, permease component
948	 68.86	0	1088643..1089554	+	303	148272126	-	CMM_0946	-	putative sugar ABC transporter, permease component
949	 73.91	0	1089587..1091449	+	620	148272127	-	CMM_0947	-	putative beta-glycosidase
950	 74.91	0	1091558..1092697	+	379	148272128	-	CMM_0948	-	LacI family transcriptional regulator
951	 76.67	0	1092708..1092917	-	69	148272129	-	CMM_0949	-	hypothetical protein
952	 74.05	0	1092917..1093471	-	184	148272130	-	CMM_0950	-	hypothetical protein
953	 76.88	+1	1093591..1094295	+	234	148272131	-	CMM_0951	-	hypothetical protein
954	 73.21	0	1094342..1095748	-	468	148272132	-	CMM_0952	-	putative MFS permease
955	 69.99	0	1095854..1097269	-	471	148272133	-	CMM_0953	-	putative MFS permease
956	 76.43	0	1097486..1097782	+	98	148272134	-	CMM_0954	-	hypothetical protein
957	 79.26	+1	1097779..1099572	-	597	148272135	-	CMM_0955	-	putative peptide ABC transporter, permease compound
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.