IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
644	 71.97	0	729154..730227	+	357	148271822	-	CMM_0643	-	putative oxidoreductase
645	 76.42	0	730274..731011	-	245	148271823	-	CMM_0644	-	putative two-component system, response regulator
646	 76.58	0	731008..732228	-	406	148271824	-	CMM_0645	-	putative two-component system sensor kinase
647	 72.83	0	732294..732650	-	118	148271825	-	CMM_0646	-	hypothetical protein
648	 74.33	0	732755..733354	-	199	148271826	-	CMM_0647	-	TetR family transcriptional regulator
649	 72.79	0	733415..734998	+	527	148271827	-	CMM_0648	-	putative efflux MFS permease
650	 63.30	-2	735725..736021	+	98	148271828	-	CMM_0649	-	hypothetical protein
651	 74.71	0	736095..737114	-	339	148271829	-	CMM_0650	-	putative monooxygenase
652	 79.74	+1	737194..738264	-	356	148271830	-	CMM_0651	-	putative monooxygenase
653	 75.67	0	738309..739274	-	321	148271831	qorA	CMM_0652	-	putative Zn-dependant quinone oxidoreductase
654	 70.29	0	739395..740333	+	312	148271832	cysK	CMM_0653	-	hypothetical protein
655	 74.87	0	740336..740920	+	194	148271833	cysE	CMM_0654	-	putative serine O-acetyltransferase
656	 71.21	0	740920..741579	+	219	148271834	-	CMM_0655	-	putative RNA methyltransferase
657	 73.80	0	741611..742171	+	186	148271835	-	CMM_0656	-	hypothetical protein
658	 73.38	0	742168..742569	-	133	148271836	-	CMM_0657	-	hypothetical protein
659	 76.44	0	742620..743141	+	173	148271837	-	CMM_0658	-	putative endoribonuclease L-PSP
660	 72.75	0	743160..744161	-	333	148271838	addB	CMM_0659	-	putative adenosine deaminase
661	 74.11	0	744239..744547	+	102	148271839	-	CMM_0660	-	hypothetical protein
662	 52.75	-2	745338..748628	+	1096	148271840	-	CMM_0661	-	hypothetical protein
663	 68.10	-1	748784..749830	-	348	148271841	adhA	CMM_0662	-	NADP-dependent alcohol dehydrogenase
664	 78.21	+1	749984..751369	+	461	148271842	-	CMM_0663	-	putative carboxylesterase, type B
665	 75.26	0	751420..751908	-	162	148271843	SoxR	CMM_0664	-	hypothetical protein
666	 68.81	-1	752015..752341	+	108	148271844	fdxA	CMM_0665	-	hypothetical protein
667	 75.15	0	752338..752832	+	164	148271845	-	CMM_0666	-	putative flavin-dependant reductase
668	 72.69	0	752869..754794	-	641	148271846	-	CMM_0667	-	putative secreted phosphoesterase
669	 74.40	0	755391..756011	+	206	148271847	-	CMM_0668	-	putative phosphohydrolase
670	 75.79	0	756008..756292	+	94	148271848	-	CMM_0669	-	hypothetical protein
671	 76.74	+1	756289..756963	-	224	148271849	-	CMM_0670	-	hypothetical protein
672	 74.64	0	757050..759155	-	701	148271850	-	CMM_0671	-	hypothetical protein
673	 77.43	+1	759152..759820	-	222	148271851	-	CMM_0672	-	hypothetical protein
674	 78.36	+1	759817..760500	-	227	148271852	-	CMM_0673	-	TetR family transcriptional regulator
675	 75.72	0	760594..761907	-	437	148271853	-	CMM_0674	-	AraC family transcriptional regulator
676	 73.53	0	762248..762451	+	67	148271854	-	CMM_0675	-	hypothetical protein
677	 79.20	+1	762473..765496	-	1007	148271855	sbcC	CMM_0676	-	putative exonuclease
678	 76.09	0	765496..766662	-	388	148271856	sbcD	CMM_0677	-	putative dsDNA exonuclease subunit
679	 74.01	0	766983..769637	+	884	148271857	pknC	CMM_0678	-	putative serine/threonine-protein kinase
680	 70.27	0	769707..770345	+	212	148271858	-	CMM_0679	-	hypothetical protein
681	 74.66	0	770342..773032	+	896	148271859	-	CMM_0680	-	putative acyl-CoA ligase/aldehyde dehydrogenase
682	 73.40	0	773029..774276	+	415	148271860	fabB	CMM_0681	-	3-oxoacyl-[acyl-carrier-protein] synthase
683	 77.27	+1	774273..775922	+	549	148271861	ilvG	CMM_0682	-	putative acetolactate synthase
684	 73.90	0	775919..776554	+	211	148271862	coaBC	CMM_0683	-	putative pantothenate metabolism flavoprotein
685	 71.67	0	776547..777245	+	232	148271863	-	CMM_0684	-	peptide ABC transporter ATP-binding protein
686	 73.25	0	777242..778471	+	409	148271864	-	CMM_0685	-	peptide ABC transporter permease
687	 73.62	0	778696..779385	+	229	148271865	-	CMM_0686	-	hypothetical protein
688	 72.50	0	779420..780259	-	279	148271866	-	CMM_0687	-	short chain dehydrogenase
689	 74.00	0	780416..780892	+	158	148271867	-	CMM_0688	-	hypothetical protein
690	 69.30	0	780975..782264	+	429	148271868	purA	CMM_0689	-	adenylosuccinate synthetase
691	 70.54	0	782357..782485	+	42	148271869	-	CMM_0690	-	hypothetical protein
692	 74.17	0	782498..782950	-	150	148271870	-	CMM_0691	-	MarR family transcriptional regulator
693	 73.17	0	783012..783380	+	122	148271871	-	CMM_0692	-	hypothetical protein
694	 74.40	0	783456..784205	+	249	148271872	-	CMM_0693	-	hypothetical protein
695	 73.00	0	784209..784745	-	178	148271873	-	CMM_0694	-	hypothetical protein
696	 69.93	0	784899..785327	+	142	148271874	-	CMM_0695	-	hypothetical protein
697	 76.04	0	785365..786303	-	312	148271875	-	CMM_0696	-	putative hydrolase
698	 70.59	0	786349..786603	-	84	148271876	-	CMM_0697	-	Cro/CI family transcriptional regulator
699	 71.39	0	786623..787300	-	225	148271877	-	CMM_0698	-	hypothetical protein
700	 77.73	+1	787367..788857	-	496	148271878	-	CMM_0699	-	two component system, sensor kinase
701	 72.94	0	788854..789522	-	222	148271879	-	CMM_0700	-	putative two-component system response regulator
702	 80.97	+2	789670..790368	+	232	148271880	-	CMM_0701	-	hypothetical protein
703	 77.10	+1	790440..791081	+	213	148271881	-	CMM_0702	-	putative acetyltransferase
704	 71.04	0	791116..791481	-	121	148271882	-	CMM_0703	-	hypothetical protein
705	 77.23	+1	791849..792331	-	160	148271883	-	CMM_0704	-	hypothetical protein
706	 76.59	0	792796..793188	+	130	148271884	-	CMM_0705	-	hypothetical protein
707	 75.70	0	793298..795367	+	689	148271885	pbpB	CMM_0706	-	putative beta lactamase/penicillin-binding protein
708	 79.49	+1	795421..796800	+	459	148271886	-	CMM_0707	-	putative two-component system, sensor kinase
709	 74.16	0	796797..797477	+	226	148271887	-	CMM_0708	-	putative two-component system response regulator
710	 70.24	0	797660..798079	+	139	148271888	-	CMM_0709	-	stress-induced protein, putative organic hydroperoxide resistance protein
711	 74.22	0	798162..798545	+	127	148271889	tyrA	CMM_0710	-	hypothetical protein
712	 71.75	0	798577..799560	-	327	148271890	-	CMM_0711	-	hypothetical protein
713	 72.32	0	799650..800480	-	276	148271891	-	CMM_0712	-	hypothetical protein
714	 70.24	0	800539..801126	-	195	148271892	-	CMM_0713	-	hypothetical protein
715	 72.11	0	801284..803158	-	624	148271893	-	CMM_0714	-	hypothetical protein
716	 70.99	0	803155..804867	-	570	148271894	wzy2	CMM_0715	-	membrane protein, putative polysaccharide polymerase
717	 76.57	0	804846..805895	-	349	148271895	wcnG	CMM_0716	-	putative pyruvyl-transferase
718	 73.80	0	805892..807082	-	396	148271896	wzx2	CMM_0717	-	hypothetical protein
719	 73.45	0	807079..808125	-	348	148271897	wcnE	CMM_0718	-	putative mannosyltransferase
720	 74.89	0	808125..809255	-	376	148271898	wcnD	CMM_0719	-	putative glycosyltransferase
721	 69.99	0	809255..810730	-	491	148271899	wcnC	CMM_0720	-	putative undecaprenyl-phosphate sugar phosphotransferase
722	 74.17	0	810821..811540	-	239	148271900	wzb	CMM_0721	-	hypothetical protein
723	 69.36	0	811550..812962	-	470	148271901	wzc	CMM_0722	-	putative protein tyrosine kinase
724	 70.36	0	813177..815450	+	757	148271902	wcnB	CMM_0723	-	putative acyltransferase
725	 70.71	0	815640..816677	-	345	148271903	wcnA	CMM_0724	-	putative membrane-bound acyltransferase
726	 70.04	0	816769..817479	-	236	148271904	-	CMM_0725	-	putative esterase
727	 74.19	0	817680..818729	-	349	148271905	-	CMM_0726	-	hypothetical protein
728	 74.75	0	818980..819783	-	267	148271906	-	CMM_0727	-	putative hydrolase
729	 71.41	0	819780..822140	-	786	148271907	purL	CMM_0728	-	phosphoribosylformylglycinamidine synthase II
730	 72.27	0	822137..822832	-	231	148271908	purQ	CMM_0729	-	phosphoribosylformylglycinamidine synthase subunit I
731	 72.26	0	822832..823224	-	130	148271909	purS	CMM_0730	-	putative phosphoribosylformylglycinamidine (FGAM) synthase
732	 74.12	0	823345..824028	-	227	148271910	-	CMM_0731	-	hypothetical protein
733	 71.39	0	824193..825590	+	465	148271911	-	CMM_0732	-	putative MFS permease
734	 73.78	0	825663..826337	-	224	148271912	-	CMM_0733	-	GntR family transcriptional regulator
735	 75.95	0	826366..827205	+	279	148271913	-	CMM_0734	-	putative amidohydrolase
736	 72.02	0	827277..828266	-	329	148271914	-	CMM_0735	-	putative oxidoreductase
737	 75.10	0	828392..828877	+	161	148271915	furA	CMM_0736	-	FUR family transcriptional regulator
738	 69.67	0	828956..830485	+	509	148271916	katA	CMM_0737	-	hypothetical protein
739	 52.34	-2	830624..832954	-	776	148271917	-	CMM_0738	-	hypothetical protein
740	 73.81	0	833418..833921	-	167	148271918	-	CMM_0739	-	putative acetyltransferase
741	 75.00	0	833936..834535	-	199	148271919	-	CMM_0740	-	putative acyltransferase
742	 70.55	0	834599..835756	+	385	148271920	-	CMM_0741	-	hypothetical protein
743	 75.66	0	835753..836553	+	266	148271921	-	CMM_0742	-	putative integral membrane protein
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.