IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
573	 70.86	0	654516..655541	+	341	148271751	resC	CMM_0572	-	putative cytochrome C-type biogenesis protein
574	 75.30	0	655571..656554	-	327	148271752	menC	CMM_0573	-	O-succinylbenzoate synthase
575	 60.97	-2	656631..657806	+	391	148271753	-	CMM_0574	-	putative cytosine-specific DNA methylase
576	 61.16	-2	657850..658593	+	247	148271754	-	CMM_0575	-	hypothetical protein
577	 71.49	0	658675..659586	+	303	148271755	menB	CMM_0576	-	naphthoate synthase
578	 78.45	+1	659612..660799	+	395	148271756	menE	CMM_0577	-	O-succinylbenzoate--CoA ligase
579	 74.19	0	660845..661828	-	327	148271757	-	CMM_0578	-	putative quinone reductase
580	 77.31	+1	661825..662256	-	143	148271758	-	CMM_0579	-	MarR family transcriptional regulator
581	 71.16	0	662376..662798	+	140	148271759	-	CMM_0580	-	hypothetical protein
582	 66.09	-1	662903..663076	-	57	148271760	-	CMM_0581	-	hypothetical protein
583	 76.42	0	663209..663526	+	105	148271761	-	CMM_0582	-	hypothetical protein
584	 75.25	0	663516..663911	-	131	148271762	-	CMM_0583	-	putative NTP pyrophosphohydrolase
585	 76.90	+1	664071..664676	-	201	148271763	-	CMM_0584	-	putative acetyltransferase
586	 73.06	0	664690..665268	-	192	148271764	-	CMM_0585	-	putative acetyltransferase
587	 74.85	0	665325..666644	-	439	148271765	hemA	CMM_0586	-	glutamyl-tRNA reductase
588	 74.73	0	666749..667876	+	375	148271766	hemE	CMM_0587	-	uroporphyrinogen decarboxylase
589	 77.99	+1	667869..669308	+	479	148271767	hemY	CMM_0588	-	hypothetical protein
590	 70.76	0	669436..669777	+	113	148271768	-	CMM_0589	-	hypothetical protein
591	 64.99	-1	669810..670226	+	138	148271769	-	CMM_0590	-	hypothetical protein
592	 76.45	0	670216..670491	+	91	148271770	-	CMM_0591	-	hypothetical protein
593	 75.95	0	670513..672150	+	545	148271771	-	CMM_0592	-	hypothetical protein
594	 74.82	0	672238..672801	+	187	148271772	-	CMM_0593	-	hypothetical protein
595	 72.05	0	672863..673642	+	259	148271773	-	CMM_0594	-	hypothetical protein
596	 71.70	0	673642..674892	+	416	148271774	hemH	CMM_0595	-	ferrochelatase
597	 77.10	+1	674889..675875	+	328	148271775	hemC	CMM_0596	-	porphobilinogen deaminase
598	 74.40	0	675872..676711	+	279	148271776	hemD	CMM_0597	-	hypothetical protein
599	 72.68	0	676708..677688	+	326	148271777	hemB	CMM_0598	-	delta-aminolevulinic acid dehydratase
600	 74.85	0	677771..679138	+	455	148271778	hemL	CMM_0599	-	glutamate-1-semialdehyde 2,1-aminomutase
601	 74.21	0	679197..680018	-	273	148271779	-	CMM_0600	-	DNA/RNA endonuclease
602	 72.10	0	680102..680764	-	220	148271780	hemO	CMM_0601	-	Heme oxygenase (decyclizing)
603	 66.67	-1	680840..681232	-	130	148271781	-	CMM_0602	-	hypothetical protein
604	 77.39	+1	681317..682342	-	341	148271782	-	CMM_0603	-	putative Zinc-dependant oxidoreductase
605	 71.93	0	682375..683400	-	341	148271783	pfkA	CMM_0604	-	hypothetical protein
606	 77.26	+1	683439..684146	+	235	148271784	-	CMM_0605	-	putative kinase
607	 69.66	0	684157..684657	-	166	148271785	-	CMM_0606	-	putative general stress protein
608	 76.09	0	684723..685688	+	321	148271786	-	CMM_0607	-	putative DNA repair protein
609	 72.00	0	685740..686546	-	268	148271787	-	CMM_0608	-	hypothetical protein
610	 73.58	0	686616..687569	+	317	148271788	-	CMM_0609	-	putative aldose-1-epimerase
611	 72.22	0	687668..688135	+	155	148271789	-	CMM_0610	-	putative glyoxylase family protein
612	 75.60	0	688242..688700	+	152	148271790	-	CMM_0611	-	MarR family transcriptional regulator
613	 76.57	0	688722..689468	-	248	148271791	-	CMM_0612	-	hypothetical protein
614	 75.87	0	689561..691201	-	546	148271792	sacC	CMM_0613	-	putative levanase/invertase
615	 70.11	0	691469..693034	+	521	148271793	sacB	CMM_0614	-	putative levansucrase
616	 80.43	+1	693118..693771	+	217	148271794	-	CMM_0615	-	hypothetical protein
617	 74.38	0	693943..694707	+	254	148271795	-	CMM_0616	-	hypothetical protein
618	 78.86	+1	694704..695531	+	275	148271796	-	CMM_0617	-	hypothetical protein
619	 75.97	0	695606..696508	-	300	148271797	-	CMM_0618	-	LysR family transcriptional regulator
620	 73.05	0	696681..700331	+	1216	148271798	putA	CMM_0619	-	delta-1-pyrroline-5-carboxylate dehydrogenase /proline oxidase
621	 75.76	0	700353..700484	+	43	148271799	-	CMM_0620	-	hypothetical protein
622	 78.30	+1	700481..701185	+	234	148271800	-	CMM_0621	-	hypothetical protein
623	 78.76	+1	701209..701787	+	192	148271801	-	CMM_0622	-	putative 4'-phosphopantetheinyl transferase
624	 75.19	0	701792..703105	-	437	148271802	-	CMM_0623	-	metalloendopeptidase family M1
625	 76.37	0	703102..707304	-	1400	148271803	npsC	CMM_0624	-	non-ribosomal peptide synthase
626	 79.13	+1	707376..707744	-	122	148271804	-	CMM_0625	-	hypothetical protein
627	 70.70	0	707868..708239	+	123	148271805	-	CMM_0626	-	hypothetical protein
628	 60.07	-2	709446..716102	+	2218	148271806	-	CMM_0627	-	hypothetical protein
629	 72.37	0	716740..717177	-	145	148271807	-	CMM_0628	-	AsnC family transcriptional regulator
630	 69.99	0	717361..718203	+	280	148271808	-	CMM_0629	-	hypothetical protein
631	 74.54	0	718242..719486	+	414	148271809	rocD	CMM_0630	-	putative ornithine aminotransferase
632	 72.29	0	719607..720104	+	165	148271810	-	CMM_0631	-	hypothetical protein
633	 72.38	0	720135..720782	+	215	148271811	-	CMM_0632	-	hypothetical protein
634	 75.93	0	720800..721792	-	330	148271812	-	CMM_0633	-	permease DMT family
635	 76.87	+1	721857..722258	-	133	148271813	-	CMM_0634	-	hypothetical protein
636	 71.53	0	722346..723230	-	294	148271814	-	CMM_0635	-	putative NDP-sugar epimerase
637	 73.62	0	723227..723643	-	138	148271815	-	CMM_0636	-	hypothetical protein
638	 77.91	+1	723640..724875	-	411	148271816	-	CMM_0637	-	benzoate transport protein BenE family
639	 75.87	0	725136..726395	+	419	148271817	-	CMM_0638	-	M23 family membrane bound metalloendopeptidase
640	 76.21	0	726453..727175	+	240	148271818	-	CMM_0639	-	hypothetical protein
641	 65.79	-1	727339..727794	+	151	148271819	-	CMM_0640	-	hypothetical protein
642	 67.93	-1	727797..728033	+	78	148271820	-	CMM_0641	-	hypothetical protein
643	 75.69	0	728165..728962	+	265	148271821	-	CMM_0642	-	hypothetical protein
644	 71.97	0	729154..730227	+	357	148271822	-	CMM_0643	-	putative oxidoreductase
645	 76.42	0	730274..731011	-	245	148271823	-	CMM_0644	-	putative two-component system, response regulator
646	 76.58	0	731008..732228	-	406	148271824	-	CMM_0645	-	putative two-component system sensor kinase
647	 72.83	0	732294..732650	-	118	148271825	-	CMM_0646	-	hypothetical protein
648	 74.33	0	732755..733354	-	199	148271826	-	CMM_0647	-	TetR family transcriptional regulator
649	 72.79	0	733415..734998	+	527	148271827	-	CMM_0648	-	putative efflux MFS permease
650	 63.30	-2	735725..736021	+	98	148271828	-	CMM_0649	-	hypothetical protein
651	 74.71	0	736095..737114	-	339	148271829	-	CMM_0650	-	putative monooxygenase
652	 79.74	+1	737194..738264	-	356	148271830	-	CMM_0651	-	putative monooxygenase
653	 75.67	0	738309..739274	-	321	148271831	qorA	CMM_0652	-	putative Zn-dependant quinone oxidoreductase
654	 70.29	0	739395..740333	+	312	148271832	cysK	CMM_0653	-	hypothetical protein
655	 74.87	0	740336..740920	+	194	148271833	cysE	CMM_0654	-	putative serine O-acetyltransferase
656	 71.21	0	740920..741579	+	219	148271834	-	CMM_0655	-	putative RNA methyltransferase
657	 73.80	0	741611..742171	+	186	148271835	-	CMM_0656	-	hypothetical protein
658	 73.38	0	742168..742569	-	133	148271836	-	CMM_0657	-	hypothetical protein
659	 76.44	0	742620..743141	+	173	148271837	-	CMM_0658	-	putative endoribonuclease L-PSP
660	 72.75	0	743160..744161	-	333	148271838	addB	CMM_0659	-	putative adenosine deaminase
661	 74.11	0	744239..744547	+	102	148271839	-	CMM_0660	-	hypothetical protein
662	 52.75	-2	745338..748628	+	1096	148271840	-	CMM_0661	-	hypothetical protein
663	 68.10	-1	748784..749830	-	348	148271841	adhA	CMM_0662	-	NADP-dependent alcohol dehydrogenase
664	 78.21	+1	749984..751369	+	461	148271842	-	CMM_0663	-	putative carboxylesterase, type B
665	 75.26	0	751420..751908	-	162	148271843	SoxR	CMM_0664	-	hypothetical protein
666	 68.81	-1	752015..752341	+	108	148271844	fdxA	CMM_0665	-	hypothetical protein
667	 75.15	0	752338..752832	+	164	148271845	-	CMM_0666	-	putative flavin-dependant reductase
668	 72.69	0	752869..754794	-	641	148271846	-	CMM_0667	-	putative secreted phosphoesterase
669	 74.40	0	755391..756011	+	206	148271847	-	CMM_0668	-	putative phosphohydrolase
670	 75.79	0	756008..756292	+	94	148271848	-	CMM_0669	-	hypothetical protein
671	 76.74	+1	756289..756963	-	224	148271849	-	CMM_0670	-	hypothetical protein
672	 74.64	0	757050..759155	-	701	148271850	-	CMM_0671	-	hypothetical protein
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.