IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
516	 71.74	0	600028..601308	+	426	148271694	serS	CMM_0515	-	seryl-tRNA synthetase
517	 72.14	0	601305..602126	+	273	148271695	-	CMM_0516	-	HAD family hydrolase
518	 70.94	0	602512..603657	+	381	148271696	-	CMM_0517	-	LytR family transcriptional regulator
519	 72.47	0	604230..604763	+	177	148271697	-	CMM_0518	-	hypothetical protein
520	 75.00	0	604825..605892	+	355	148271698	-	CMM_0519	-	hypothetical protein
521	 69.53	0	606062..606760	+	232	148271699	-	CMM_0520	-	hypothetical protein
522	 73.44	0	606778..607854	+	358	148271700	-	CMM_0521	-	putative oxidoreductase/dehydrogenase
523	 74.32	0	607946..608311	+	121	148271701	-	CMM_0522	-	hypothetical protein
524	 74.34	0	608351..609706	-	451	148271702	-	CMM_0523	-	glycosy hydrolase family protein
525	 72.69	0	610366..611445	-	359	148271703	-	CMM_0524	-	hypothetical protein
526	 74.58	0	611442..611858	-	138	148271704	-	CMM_0525	-	PadR family transcriptional regulator
527	 79.17	+1	612006..612341	+	111	148271705	-	CMM_0526	-	hypothetical protein
528	 77.34	+1	612444..613211	+	255	148271706	-	CMM_0527	-	hypothetical protein
529	 76.02	0	613276..614184	+	302	148271707	-	CMM_0528	-	putative metal-dependent hydrolase
530	 74.95	0	614297..614839	+	180	148271708	-	CMM_0529	-	hypothetical protein
531	 70.72	0	614857..615891	+	344	148271709	-	CMM_0530	-	putative oxidoreductase
532	 75.78	0	615988..616755	+	255	148271710	plsC	CMM_0531	-	putative 1-acylglycerol-3-phosphate O-acyltransferase
533	 73.14	0	617075..617491	-	138	148271711	panD	CMM_0532	-	hypothetical protein
534	 70.33	0	617722..618813	+	363	148271712	-	CMM_0533	-	putative tRNA processing ribonuclease BN
535	 72.43	0	618856..620382	-	508	148271713	phrB	CMM_0534	-	deoxyribodipyrimidine photo-lyase
536	 76.98	+1	620529..621914	+	461	148271714	-	CMM_0535	-	putative glycosyl transferase
537	 71.85	0	621911..622354	-	147	148271715	-	CMM_0536	-	MarR family transcriptional regulator
538	 76.35	0	622675..623469	-	264	148271716	-	CMM_0537	-	putative transcriptional regulator
539	 71.36	0	623866..624504	-	212	148271717	upp	CMM_0538	-	uracil phosphoribosyltransferase
540	 78.22	+1	624573..625022	+	149	148271718	-	CMM_0539	-	putative cytosine/adenosine deaminase
541	 76.78	+1	625050..625583	-	177	148271719	-	CMM_0540	-	hypothetical protein
542	 75.74	0	625636..626043	+	135	148271720	-	CMM_0541	-	putative carboxymuconolactone decarboxylase-like protein
543	 77.67	+1	626040..626948	+	302	148271721	-	CMM_0542	-	putative phosphotriesterase-family protein
544	 69.72	0	626945..627862	-	305	148271722	-	CMM_0543	-	CDF family metal efflux transport protein
545	 75.91	0	627994..628869	+	291	148271723	proC	CMM_0544	-	hypothetical protein
546	 68.31	-1	628910..629578	-	222	148271724	trkA	CMM_0545	-	potassium uptake system NAD-binding protein
547	 68.77	-1	629643..631067	-	474	148271725	trkG	CMM_0546	-	Trk family potassium uptake protein
548	 75.23	0	631147..631695	+	182	148271726	-	CMM_0547	-	ArsR family transcriptional regulator
549	 69.58	0	631818..632057	+	79	148271727	-	CMM_0548	-	putative DNA-binding protein, putative excisionase
550	 75.95	0	632357..633196	-	279	148271729	serB1	CMM_0549	-	putative phosphoserine phosphatase
551	 73.86	0	633187..633450	+	87	148271728	-	CMM_0550	-	putative thioredoxin
552	 72.94	0	633485..633787	+	100	148271730	-	CMM_0551	-	hypothetical protein
553	 76.16	0	633849..634880	+	343	148271731	-	CMM_0552	-	LacI family transcription regulator
554	 72.45	0	634993..636306	+	437	148271732	-	CMM_0553	-	putative sugar MFS-permease
555	 76.31	0	636303..637142	+	279	148271733	-	CMM_0554	-	putative hydrolase
556	 76.97	+1	637139..638380	+	413	148271734	-	CMM_0555	-	hypothetical protein
557	 74.84	0	638377..639012	-	211	148271735	-	CMM_0556	-	hypothetical protein
558	 73.15	0	639092..639307	-	71	148271736	-	CMM_0557	-	hypothetical protein
559	 71.17	0	639386..639718	-	110	148271737	-	CMM_0558	-	hypothetical protein
560	 77.62	+1	639896..640306	-	136	148271738	-	CMM_0559	-	hypothetical protein
561	 72.41	0	640299..641534	-	411	148271739	-	CMM_0560	-	putative transcriptional regulator
562	 68.27	-1	641710..643020	-	436	148271740	aspS	CMM_0561	-	aspartyl-tRNA synthetase
563	 74.82	0	643133..643966	+	277	148271741	-	CMM_0562	-	hypothetical protein
564	 77.29	+1	643963..644583	+	206	148271742	-	CMM_0563	-	putative allophanate hydrolase subunit
565	 78.65	+1	644580..645497	+	305	148271743	-	CMM_0564	-	putative allophanate hydrolase subunit
566	 73.31	0	645549..646376	-	275	148271744	-	CMM_0565	-	hypothetical protein
567	 74.34	0	646496..648985	-	829	148271745	-	CMM_0566	-	putative excinuclease ABC subunit A
568	 70.31	0	649537..650580	-	347	148271746	sigB	CMM_0567	-	putative RNA polymerase sigma 70 factor
569	 73.02	0	650896..651540	+	214	148271747	-	CMM_0568	-	putative phosphoglycerate mutase
570	 71.92	0	651540..652148	+	202	148271748	ccbD	CMM_0569	-	putative thioredoxin
571	 71.39	0	652149..652889	+	246	148271749	ccdA	CMM_0570	-	cytochrome C biogenesis membrane protein
572	 70.55	0	652873..654519	+	548	148271750	resB	CMM_0571	-	putative cytochrome C biogenesis membrane protein
573	 70.86	0	654516..655541	+	341	148271751	resC	CMM_0572	-	putative cytochrome C-type biogenesis protein
574	 75.30	0	655571..656554	-	327	148271752	menC	CMM_0573	-	O-succinylbenzoate synthase
575	 60.97	-2	656631..657806	+	391	148271753	-	CMM_0574	-	putative cytosine-specific DNA methylase
576	 61.16	-2	657850..658593	+	247	148271754	-	CMM_0575	-	hypothetical protein
577	 71.49	0	658675..659586	+	303	148271755	menB	CMM_0576	-	naphthoate synthase
578	 78.45	+1	659612..660799	+	395	148271756	menE	CMM_0577	-	O-succinylbenzoate--CoA ligase
579	 74.19	0	660845..661828	-	327	148271757	-	CMM_0578	-	putative quinone reductase
580	 77.31	+1	661825..662256	-	143	148271758	-	CMM_0579	-	MarR family transcriptional regulator
581	 71.16	0	662376..662798	+	140	148271759	-	CMM_0580	-	hypothetical protein
582	 66.09	-1	662903..663076	-	57	148271760	-	CMM_0581	-	hypothetical protein
583	 76.42	0	663209..663526	+	105	148271761	-	CMM_0582	-	hypothetical protein
584	 75.25	0	663516..663911	-	131	148271762	-	CMM_0583	-	putative NTP pyrophosphohydrolase
585	 76.90	+1	664071..664676	-	201	148271763	-	CMM_0584	-	putative acetyltransferase
586	 73.06	0	664690..665268	-	192	148271764	-	CMM_0585	-	putative acetyltransferase
587	 74.85	0	665325..666644	-	439	148271765	hemA	CMM_0586	-	glutamyl-tRNA reductase
588	 74.73	0	666749..667876	+	375	148271766	hemE	CMM_0587	-	uroporphyrinogen decarboxylase
589	 77.99	+1	667869..669308	+	479	148271767	hemY	CMM_0588	-	hypothetical protein
590	 70.76	0	669436..669777	+	113	148271768	-	CMM_0589	-	hypothetical protein
591	 64.99	-1	669810..670226	+	138	148271769	-	CMM_0590	-	hypothetical protein
592	 76.45	0	670216..670491	+	91	148271770	-	CMM_0591	-	hypothetical protein
593	 75.95	0	670513..672150	+	545	148271771	-	CMM_0592	-	hypothetical protein
594	 74.82	0	672238..672801	+	187	148271772	-	CMM_0593	-	hypothetical protein
595	 72.05	0	672863..673642	+	259	148271773	-	CMM_0594	-	hypothetical protein
596	 71.70	0	673642..674892	+	416	148271774	hemH	CMM_0595	-	ferrochelatase
597	 77.10	+1	674889..675875	+	328	148271775	hemC	CMM_0596	-	porphobilinogen deaminase
598	 74.40	0	675872..676711	+	279	148271776	hemD	CMM_0597	-	hypothetical protein
599	 72.68	0	676708..677688	+	326	148271777	hemB	CMM_0598	-	delta-aminolevulinic acid dehydratase
600	 74.85	0	677771..679138	+	455	148271778	hemL	CMM_0599	-	glutamate-1-semialdehyde 2,1-aminomutase
601	 74.21	0	679197..680018	-	273	148271779	-	CMM_0600	-	DNA/RNA endonuclease
602	 72.10	0	680102..680764	-	220	148271780	hemO	CMM_0601	-	Heme oxygenase (decyclizing)
603	 66.67	-1	680840..681232	-	130	148271781	-	CMM_0602	-	hypothetical protein
604	 77.39	+1	681317..682342	-	341	148271782	-	CMM_0603	-	putative Zinc-dependant oxidoreductase
605	 71.93	0	682375..683400	-	341	148271783	pfkA	CMM_0604	-	hypothetical protein
606	 77.26	+1	683439..684146	+	235	148271784	-	CMM_0605	-	putative kinase
607	 69.66	0	684157..684657	-	166	148271785	-	CMM_0606	-	putative general stress protein
608	 76.09	0	684723..685688	+	321	148271786	-	CMM_0607	-	putative DNA repair protein
609	 72.00	0	685740..686546	-	268	148271787	-	CMM_0608	-	hypothetical protein
610	 73.58	0	686616..687569	+	317	148271788	-	CMM_0609	-	putative aldose-1-epimerase
611	 72.22	0	687668..688135	+	155	148271789	-	CMM_0610	-	putative glyoxylase family protein
612	 75.60	0	688242..688700	+	152	148271790	-	CMM_0611	-	MarR family transcriptional regulator
613	 76.57	0	688722..689468	-	248	148271791	-	CMM_0612	-	hypothetical protein
614	 75.87	0	689561..691201	-	546	148271792	sacC	CMM_0613	-	putative levanase/invertase
615	 70.11	0	691469..693034	+	521	148271793	sacB	CMM_0614	-	putative levansucrase
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.