IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
469	 64.66	-2	544648..544995	-	115	148271647	-	CMM_0468	-	hypothetical protein
470	 69.53	0	545154..546062	+	302	148271648	-	CMM_0469	-	putative oxidoreductase
471	 77.07	+1	546093..546659	-	188	148271649	-	CMM_0470	-	hypothetical protein
472	 71.55	0	546768..548468	+	566	148271650	-	CMM_0471	-	putative two-component sensor histidine kinase
473	 77.97	+1	548510..549385	+	291	148271651	-	CMM_0472	-	hypothetical protein
474	 75.29	0	549618..550475	-	285	148271652	-	CMM_0473	-	putative two-component system response regulator
475	 76.70	0	550605..551192	-	195	148271653	-	CMM_0474	-	hypothetical protein
476	 70.97	0	551281..552117	-	278	148271654	xthB	CMM_0475	-	putative exonuclease III
477	 78.03	+1	556093..556488	-	131	148271655	-	CMM_0476	-	hypothetical protein
478	 78.27	+1	556485..557234	-	249	148271656	-	CMM_0477	-	hypothetical protein
479	 72.61	0	557231..557785	-	184	148271657	sigZ	CMM_0478	-	putative ECF sigma factor
480	 75.53	0	557918..558391	+	157	148271658	-	CMM_0479	-	hypothetical protein
481	 76.48	0	558564..559439	+	291	148271659	-	CMM_0480	-	putative beta-hydroxyacid dehydrogenase
482	 71.89	0	559506..560060	+	184	148271660	pyrE	CMM_0481	-	orotate phosphoribosyltransferase
483	 78.23	+1	560060..562135	+	691	148271661	-	CMM_0482	-	hypothetical protein
484	 76.67	0	562242..563510	+	422	148271662	-	CMM_0483	-	putative MFS permease
485	 69.67	0	563511..564308	-	265	148271663	nagD	CMM_0484	-	putative N-acetylglucosamine-6-phosphate deacetylase
486	 75.72	0	564438..565343	+	301	148271664	cpdA	CMM_0485	-	putative 3',5'-cyclic-nucleotide phosphodiesterase
487	 64.33	-2	565417..565587	-	56	148271665	-	CMM_0486	-	hypothetical protein
488	 74.29	0	565772..566191	+	139	148271666	-	CMM_0487	-	hypothetical protein
489	 75.36	0	566280..568454	+	724	148271667	recQ2	CMM_0488	-	putative ATP-dependent DNA helicase
490	 72.68	0	568474..569520	-	348	148271668	-	CMM_0489	-	putative adenine-specific DNA-modification methylase
491	 77.10	+1	569873..570955	+	360	148271669	-	CMM_0490	-	hypothetical protein
492	 71.44	0	571114..572013	+	299	148271670	-	CMM_0491	-	hypothetical protein
493	 74.06	0	572091..573335	+	414	148271671	-	CMM_0492	-	hypothetical protein
494	 74.61	0	573369..574463	-	364	148271672	-	CMM_0493	-	putative oxidoreductase
495	 77.63	+1	574662..576896	+	744	148271673	-	CMM_0494	-	putative sucrose synthase (sucrose-UDP glucosyltransferase)
496	 75.41	0	576893..578218	+	441	148271674	-	CMM_0495	-	putative glycosyltransferase
497	 73.02	0	578576..580291	+	571	148271675	-	CMM_0496	-	hypothetical protein
498	 71.26	0	580291..581226	+	311	148271676	-	CMM_0497	-	hypothetical protein
499	 71.63	0	581223..582068	+	281	148271677	-	CMM_0498	-	hypothetical protein
500	 74.40	0	582124..583041	+	305	148271678	-	CMM_0499	-	putative lysophospholipase
501	 76.97	+1	583038..583532	+	164	148271679	-	CMM_0500	-	putative acetyltransferase
502	 78.06	+1	583604..586429	-	941	148271680	-	CMM_0501	-	hypothetical protein
503	 77.26	+1	586426..588303	-	625	148271681	-	CMM_0502	-	serine protease
504	 74.73	0	588673..589404	+	243	148271682	-	CMM_0503	-	TetR family transcriptional regulator
505	 72.55	0	589476..591650	-	724	148271683	-	CMM_0504	-	putative phospholipase C
506	 74.25	0	591934..592566	-	210	148271684	alkB	CMM_0505	-	DNA repair system specific for alkylated DNA
507	 72.54	0	592631..593311	-	226	148271685	-	CMM_0506	-	hypothetical protein
508	 70.76	0	593390..594439	+	349	148271686	lplA	CMM_0507	-	putative lipoate-protein ligase A
509	 72.98	0	594698..594982	-	94	148271687	-	CMM_0508	-	putative acetyltransferase
510	 72.60	0	595050..595268	-	72	148271688	-	CMM_0509	-	hypothetical protein
511	 76.44	0	595269..595616	-	115	148271689	-	CMM_0510	-	hypothetical protein
512	 71.24	0	595865..596761	+	298	148271690	-	CMM_0511	-	hypothetical protein
513	 76.00	0	596758..597207	-	149	148271691	-	CMM_0512	-	hypothetical protein
514	 71.79	0	597320..598960	-	546	148271692	pgmA	CMM_0513	-	phosphoglucomutase
515	 73.98	0	599010..599966	+	318	148271693	pheA	CMM_0514	-	hypothetical protein
516	 71.74	0	600028..601308	+	426	148271694	serS	CMM_0515	-	seryl-tRNA synthetase
517	 72.14	0	601305..602126	+	273	148271695	-	CMM_0516	-	HAD family hydrolase
518	 70.94	0	602512..603657	+	381	148271696	-	CMM_0517	-	LytR family transcriptional regulator
519	 72.47	0	604230..604763	+	177	148271697	-	CMM_0518	-	hypothetical protein
520	 75.00	0	604825..605892	+	355	148271698	-	CMM_0519	-	hypothetical protein
521	 69.53	0	606062..606760	+	232	148271699	-	CMM_0520	-	hypothetical protein
522	 73.44	0	606778..607854	+	358	148271700	-	CMM_0521	-	putative oxidoreductase/dehydrogenase
523	 74.32	0	607946..608311	+	121	148271701	-	CMM_0522	-	hypothetical protein
524	 74.34	0	608351..609706	-	451	148271702	-	CMM_0523	-	glycosy hydrolase family protein
525	 72.69	0	610366..611445	-	359	148271703	-	CMM_0524	-	hypothetical protein
526	 74.58	0	611442..611858	-	138	148271704	-	CMM_0525	-	PadR family transcriptional regulator
527	 79.17	+1	612006..612341	+	111	148271705	-	CMM_0526	-	hypothetical protein
528	 77.34	+1	612444..613211	+	255	148271706	-	CMM_0527	-	hypothetical protein
529	 76.02	0	613276..614184	+	302	148271707	-	CMM_0528	-	putative metal-dependent hydrolase
530	 74.95	0	614297..614839	+	180	148271708	-	CMM_0529	-	hypothetical protein
531	 70.72	0	614857..615891	+	344	148271709	-	CMM_0530	-	putative oxidoreductase
532	 75.78	0	615988..616755	+	255	148271710	plsC	CMM_0531	-	putative 1-acylglycerol-3-phosphate O-acyltransferase
533	 73.14	0	617075..617491	-	138	148271711	panD	CMM_0532	-	hypothetical protein
534	 70.33	0	617722..618813	+	363	148271712	-	CMM_0533	-	putative tRNA processing ribonuclease BN
535	 72.43	0	618856..620382	-	508	148271713	phrB	CMM_0534	-	deoxyribodipyrimidine photo-lyase
536	 76.98	+1	620529..621914	+	461	148271714	-	CMM_0535	-	putative glycosyl transferase
537	 71.85	0	621911..622354	-	147	148271715	-	CMM_0536	-	MarR family transcriptional regulator
538	 76.35	0	622675..623469	-	264	148271716	-	CMM_0537	-	putative transcriptional regulator
539	 71.36	0	623866..624504	-	212	148271717	upp	CMM_0538	-	uracil phosphoribosyltransferase
540	 78.22	+1	624573..625022	+	149	148271718	-	CMM_0539	-	putative cytosine/adenosine deaminase
541	 76.78	+1	625050..625583	-	177	148271719	-	CMM_0540	-	hypothetical protein
542	 75.74	0	625636..626043	+	135	148271720	-	CMM_0541	-	putative carboxymuconolactone decarboxylase-like protein
543	 77.67	+1	626040..626948	+	302	148271721	-	CMM_0542	-	putative phosphotriesterase-family protein
544	 69.72	0	626945..627862	-	305	148271722	-	CMM_0543	-	CDF family metal efflux transport protein
545	 75.91	0	627994..628869	+	291	148271723	proC	CMM_0544	-	hypothetical protein
546	 68.31	-1	628910..629578	-	222	148271724	trkA	CMM_0545	-	potassium uptake system NAD-binding protein
547	 68.77	-1	629643..631067	-	474	148271725	trkG	CMM_0546	-	Trk family potassium uptake protein
548	 75.23	0	631147..631695	+	182	148271726	-	CMM_0547	-	ArsR family transcriptional regulator
549	 69.58	0	631818..632057	+	79	148271727	-	CMM_0548	-	putative DNA-binding protein, putative excisionase
550	 75.95	0	632357..633196	-	279	148271729	serB1	CMM_0549	-	putative phosphoserine phosphatase
551	 73.86	0	633187..633450	+	87	148271728	-	CMM_0550	-	putative thioredoxin
552	 72.94	0	633485..633787	+	100	148271730	-	CMM_0551	-	hypothetical protein
553	 76.16	0	633849..634880	+	343	148271731	-	CMM_0552	-	LacI family transcription regulator
554	 72.45	0	634993..636306	+	437	148271732	-	CMM_0553	-	putative sugar MFS-permease
555	 76.31	0	636303..637142	+	279	148271733	-	CMM_0554	-	putative hydrolase
556	 76.97	+1	637139..638380	+	413	148271734	-	CMM_0555	-	hypothetical protein
557	 74.84	0	638377..639012	-	211	148271735	-	CMM_0556	-	hypothetical protein
558	 73.15	0	639092..639307	-	71	148271736	-	CMM_0557	-	hypothetical protein
559	 71.17	0	639386..639718	-	110	148271737	-	CMM_0558	-	hypothetical protein
560	 77.62	+1	639896..640306	-	136	148271738	-	CMM_0559	-	hypothetical protein
561	 72.41	0	640299..641534	-	411	148271739	-	CMM_0560	-	putative transcriptional regulator
562	 68.27	-1	641710..643020	-	436	148271740	aspS	CMM_0561	-	aspartyl-tRNA synthetase
563	 74.82	0	643133..643966	+	277	148271741	-	CMM_0562	-	hypothetical protein
564	 77.29	+1	643963..644583	+	206	148271742	-	CMM_0563	-	putative allophanate hydrolase subunit
565	 78.65	+1	644580..645497	+	305	148271743	-	CMM_0564	-	putative allophanate hydrolase subunit
566	 73.31	0	645549..646376	-	275	148271744	-	CMM_0565	-	hypothetical protein
567	 74.34	0	646496..648985	-	829	148271745	-	CMM_0566	-	putative excinuclease ABC subunit A
568	 70.31	0	649537..650580	-	347	148271746	sigB	CMM_0567	-	putative RNA polymerase sigma 70 factor
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.