IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
382	 74.66	0	459383..460120	+	245	148271560	phnF	CMM_0381	-	GntR family transcriptional regulator
383	 74.79	0	460220..461437	+	405	148271561	-	CMM_0382	-	putative multidrug efflux MFS permease
384	 74.75	0	461542..464274	+	910	148271562	ppcA	CMM_0383	-	hypothetical protein
385	 70.24	0	464495..464998	-	167	148271563	-	CMM_0384	-	Cro/CI family transcriptional regulator
386	 73.24	0	465146..466255	-	369	148271564	ltaE	CMM_0385	-	putative L-threonine aldolase
387	 72.60	0	466292..466948	-	218	148271565	-	CMM_0386	-	putative NTP pyrophosphohydrolase
388	 73.44	0	467019..468287	-	422	148271566	-	CMM_0387	-	putative NAD(FAD)-dependent dehydrogenase
389	 71.14	0	468608..469054	+	148	148271567	-	CMM_0388	-	putative alkaline shock protein
390	 74.24	0	469277..470095	+	272	148271568	aqpZ	CMM_0389	-	hypothetical protein
391	 77.00	+1	470190..471176	+	328	148271569	-	CMM_0390	-	hypothetical protein
392	 72.60	0	471212..471784	-	190	148271570	-	CMM_0391	-	hypothetical protein
393	 71.08	0	471875..472327	-	150	148271571	-	CMM_0392	-	hypothetical protein
394	 69.54	0	472374..473138	-	254	148271572	-	CMM_0393	-	hypothetical protein
395	 70.62	0	473188..474225	-	345	148271573	-	CMM_0394	-	hypothetical protein
396	 72.22	0	474322..474789	-	155	148271574	-	CMM_0395	-	hypothetical protein
397	 69.75	0	474786..475919	-	377	148271575	-	CMM_0396	-	putative Na+ efflux ABC transporter, permease component
398	 71.09	0	475916..476797	-	293	148271576	-	CMM_0397	-	putative ABC transporter, ATP-binding protein
399	 76.22	0	476999..477448	+	149	148271577	-	CMM_0398	-	hypothetical protein
400	 74.28	0	477439..478344	-	301	148271578	-	CMM_0399	-	hypothetical protein
401	 73.21	0	478341..479135	-	264	148271579	-	CMM_0400	-	putative short chain dehydrogenase
402	 76.50	0	479188..479970	+	260	148271580	-	CMM_0401	-	putative short-chain alcohol dehydrogenase
403	 72.00	0	479989..480438	-	149	148271581	-	CMM_0402	-	hypothetical protein
404	 71.24	0	480919..482340	+	473	148271582	glpT	CMM_0403	-	putative glycerol-3-phosphate MFS permease
405	 74.39	0	482363..483100	-	245	148271583	-	CMM_0404	-	putative two-component system response regulator
406	 74.40	0	483097..484506	-	469	148271584	-	CMM_0405	-	putative two-component system, sensor kinase
407	 72.44	0	484813..486405	+	530	148271585	-	CMM_0406	-	putative drug efflux MFS permease
408	 77.27	+1	486491..487339	-	282	148271586	-	CMM_0407	-	alpha/beta fold family hydrolase
409	 77.12	+1	487427..488134	+	235	148271587	-	CMM_0408	-	hypothetical protein
410	 72.55	0	488148..488861	-	237	148271588	-	CMM_0409	-	putative oxidoreductase
411	 76.43	0	488994..489413	+	139	148271589	-	CMM_0410	-	MerR family transcriptional regulator
412	 68.58	-1	489604..490074	+	156	148271590	-	CMM_0411	-	hypothetical protein
413	 65.56	-1	490088..490267	+	59	148271591	-	CMM_0412	-	hypothetical protein
414	 73.00	0	490374..490736	-	120	148271592	-	CMM_0413	-	hypothetical protein
415	 75.05	0	490826..491362	+	178	148271593	-	CMM_0414	-	MarR family transcriptional regulator
416	 72.34	0	491439..491861	+	140	148271594	osmC	CMM_0415	-	organic hydroperoxide resistance protein
417	 73.04	0	491861..492268	+	135	148271595	-	CMM_0416	-	hypothetical protein
418	 71.76	0	492406..492837	+	143	148271596	-	CMM_0417	-	hypothetical protein
419	 74.34	0	492847..493980	-	377	148271597	-	CMM_0418	-	putative epoxide hydrolase
420	 65.53	-1	493997..495226	-	409	148271598	-	CMM_0419	-	hypothetical protein
421	 71.20	0	495310..496368	-	352	148271599	-	CMM_0420	-	putative sugar ABC transporter, membrane spanning protein
422	 71.65	0	496365..497447	-	360	148271600	-	CMM_0421	-	putative sugar ABC transporter, permease component
423	 71.43	0	497444..499018	-	524	148271601	-	CMM_0422	-	putative sugar ABC transporter, ATPase component
424	 69.55	0	499112..500116	-	334	148271602	-	CMM_0423	-	putative sugar ABC transporter, binding protein
425	 74.79	0	500283..501956	-	557	148271603	-	CMM_0424	-	putative sugar uptake ABC transporter, ATPase component
426	 73.51	0	502082..503104	-	340	148271604	-	CMM_0425	-	LacI family transcription regulator
427	 69.07	0	503366..504322	+	318	148271605	-	CMM_0426	-	manganese-containing catalase
428	 71.75	0	506213..506389	+	58	148271606	-	CMM_0427	-	hypothetical protein
429	 70.60	0	506602..509040	+	812	148271607	-	CMM_0428	-	putative phosphoketolase
430	 75.60	0	509091..509840	-	249	148271608	-	CMM_0429	-	hypothetical protein
431	 74.82	0	509932..511758	-	608	148271609	-	CMM_0430	-	hypothetical protein
432	 74.83	0	511928..514192	-	754	148271610	-	CMM_0431	-	putative hemagglutinin/hemolysin-related protein
433	 71.95	0	514407..515069	+	220	148271611	-	CMM_0432	-	hypothetical protein
434	 76.65	0	515083..516114	-	343	148271612	fepG	CMM_0433	-	putative iron-siderophore ABC transporter,permease component
435	 77.18	+1	516111..517118	-	335	148271613	fepD	CMM_0434	-	putative iron-siderophore ABC transporter,permease component
436	 75.49	0	517149..518225	+	358	148271614	fepB	CMM_0435	-	putative iron-siderophore ABC transporter,binding protein
437	 77.20	+1	518235..518756	-	173	148271615	-	CMM_0436	-	putative acetyltransferase
438	 74.27	0	518809..519558	+	249	148271616	-	CMM_0437	-	putative SAM-dependant methyltransferase
439	 77.69	+1	519626..520414	-	262	148271617	-	CMM_0438	-	putative hydrolase
440	 66.85	-1	520414..520944	-	176	148271618	padA	CMM_0439	-	putative phenolic acid decarboxylase
441	 78.04	+1	521008..521508	+	166	148271619	-	CMM_0440	-	hypothetical protein
442	 67.88	-1	521634..522209	+	191	148271620	-	CMM_0441	-	hypothetical protein
443	 68.13	-1	522274..522888	+	204	148271621	-	CMM_0442	-	hypothetical protein
444	 77.16	+1	522987..523577	-	196	148271622	-	CMM_0443	-	MarR family transcriptional regulator
445	 69.80	0	523574..525331	-	585	148271623	-	CMM_0444	-	MFS family transporter
446	 69.19	0	525500..525856	+	118	148271624	-	CMM_0445	-	hypothetical protein
447	 74.74	0	525870..527021	-	383	148271625	-	CMM_0446	-	putative peptidase
448	 73.79	0	527021..527329	-	102	148271626	-	CMM_0447	-	hypothetical protein
449	 73.80	0	527347..527865	-	172	148271627	-	CMM_0448	-	hypothetical protein
450	 74.09	0	527872..528774	-	300	148271628	-	CMM_0449	-	hypothetical protein
451	 76.03	0	528865..529494	-	209	148271629	-	CMM_0450	-	hypothetical protein
452	 70.75	0	529491..530912	-	473	148271630	-	CMM_0451	-	hypothetical protein
453	 75.66	0	531050..531616	-	188	148271631	-	CMM_0452	-	putative acetyltransferase
454	 70.77	0	531745..532962	+	405	148271632	pitA	CMM_0453	-	low affinity phosphate permease
455	 73.08	0	532974..533285	+	103	148271633	-	CMM_0454	-	hypothetical protein
456	 76.79	+1	533288..533998	+	236	148271634	-	CMM_0455	-	hypothetical protein
457	 74.51	0	534030..534233	-	67	148271635	-	CMM_0456	-	hypothetical protein
458	 73.30	0	534450..535112	+	220	148271636	-	CMM_0457	-	TetR family transcriptional regulator
459	 70.31	0	535109..536812	+	567	148271637	-	CMM_0458	-	MFS-type efflux permease
460	 74.55	0	536932..537375	+	147	148271638	-	CMM_0459	-	hypothetical protein
461	 74.45	0	537372..539066	-	564	148271639	-	CMM_0460	-	hypothetical protein
462	 70.11	0	539259..540188	+	309	148271640	-	CMM_0461	-	permease AEC family
463	 72.33	0	540201..540359	-	52	148271641	-	CMM_0462	-	hypothetical protein
464	 75.68	0	540498..540974	-	158	148271642	-	CMM_0463	-	putative acetyltransferase
465	 77.50	+1	541062..542021	-	319	148271643	-	CMM_0464	-	hypothetical protein
466	 76.03	0	542537..543241	-	234	148271644	-	CMM_0465	-	hypothetical protein
467	 74.55	0	543275..544162	-	295	148271645	-	CMM_0466	-	hypothetical protein
468	 73.52	0	544172..544609	-	145	148271646	-	CMM_0467	-	hypothetical protein
469	 64.66	-2	544648..544995	-	115	148271647	-	CMM_0468	-	hypothetical protein
470	 69.53	0	545154..546062	+	302	148271648	-	CMM_0469	-	putative oxidoreductase
471	 77.07	+1	546093..546659	-	188	148271649	-	CMM_0470	-	hypothetical protein
472	 71.55	0	546768..548468	+	566	148271650	-	CMM_0471	-	putative two-component sensor histidine kinase
473	 77.97	+1	548510..549385	+	291	148271651	-	CMM_0472	-	hypothetical protein
474	 75.29	0	549618..550475	-	285	148271652	-	CMM_0473	-	putative two-component system response regulator
475	 76.70	0	550605..551192	-	195	148271653	-	CMM_0474	-	hypothetical protein
476	 70.97	0	551281..552117	-	278	148271654	xthB	CMM_0475	-	putative exonuclease III
477	 78.03	+1	556093..556488	-	131	148271655	-	CMM_0476	-	hypothetical protein
478	 78.27	+1	556485..557234	-	249	148271656	-	CMM_0477	-	hypothetical protein
479	 72.61	0	557231..557785	-	184	148271657	sigZ	CMM_0478	-	putative ECF sigma factor
480	 75.53	0	557918..558391	+	157	148271658	-	CMM_0479	-	hypothetical protein
481	 76.48	0	558564..559439	+	291	148271659	-	CMM_0480	-	putative beta-hydroxyacid dehydrogenase
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.