IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
349	 73.59	0	424342..425685	-	447	148271527	bglY	CMM_0348	-	putative 6-phospho-beta-glucosidase
350	 73.28	0	425682..426407	-	241	148271528	-	CMM_0349	-	DeoR family transcriptional regulator
351	 77.71	+1	426635..427657	+	340	148271529	-	CMM_0350	-	putative carbohydrate kinase
352	 70.47	0	427733..429019	+	428	148271530	-	CMM_0351	-	putative sugar ABC transporter, substrate binding protein
353	 67.97	-1	429016..430014	+	332	148271531	-	CMM_0352	-	putative sugar ABC transporter, permease component
354	 68.29	-1	430011..430934	+	307	148271532	-	CMM_0353	-	putative sugar ABC transporter, permease component
355	 78.04	+1	430931..431695	+	254	148271533	nagB	CMM_0354	-	putative glucosamine-6-phosphate isomerase
356	 75.69	0	431769..434759	+	996	148271534	bgaA	CMM_0355	-	beta-galactosidase
357	 72.09	0	434829..435344	-	171	148271535	-	CMM_0356	-	putative acyl-CoA thioesterase
358	 69.46	0	435599..436171	+	190	148271536	-	CMM_0357	-	hypothetical protein
359	 74.95	0	436334..437383	+	349	148271537	-	CMM_0358	-	LacI family transcriptional regulator
360	 70.78	0	437577..438791	+	404	148271538	-	CMM_0359	-	putative sugar ABC transporter, substrate-binding protein
361	 69.48	0	438788..439747	+	319	148271539	-	CMM_0360	-	putative sugar ABC transporter, permease component
362	 67.75	-1	439744..440574	+	276	148271540	-	CMM_0361	-	putative sugar ABC transporter, permease component
363	 71.99	0	440654..442702	+	682	148271541	-	CMM_0362	-	putative alpha glucosidase
364	 72.06	0	442816..443871	+	351	148271542	-	CMM_0363	-	putative Fe3+-hydroxamate ABC transporter,substrate binding protein
365	 74.93	0	443868..444944	+	358	148271543	-	CMM_0364	-	putative Fe3+-siderophore ABC transporter,permease component
366	 75.36	0	444941..445711	+	256	148271544	-	CMM_0365	-	putative Fe3+-siderophore ABC transporter,ATPase component
367	 74.16	0	445786..446586	+	266	148271545	-	CMM_0366	-	putative nucleoside-diphosphate-sugar epimerase
368	 70.37	0	446742..447713	+	323	148271546	phnD	CMM_0367	-	putative phosphonate ABC transporter, substrate-binding protein
369	 74.56	0	447735..448634	+	299	148271547	phnC	CMM_0368	-	putative phosphate/phosphonate ABC transporter,ATPase component
370	 73.81	0	448631..450379	+	582	148271548	phnE	CMM_0369	-	putative phosphate/phosphonate ABC transporter,permease component
371	 78.52	+1	450376..451269	+	297	148271549	panE	CMM_0370	-	2-dehydropantoate 2-reductase
372	 71.36	0	451286..451903	-	205	148271550	phnX	CMM_0371	-	putative acetyltransferase
373	 80.59	+1	451900..452610	-	236	148271551	phnN	CMM_0372	-	hypothetical protein
374	 75.30	0	452607..453788	-	393	148271552	phnM	CMM_0373	-	putative metal-dependent hydrolase involved in phosphonate metabolism
375	 78.71	+1	453785..454531	-	248	148271553	phnV	CMM_0374	-	hypothetical protein
376	 75.36	0	454528..455286	-	252	148271554	phnL	CMM_0375	-	putative phosphonate ABC transporter, ATPase
377	 72.18	0	455283..456062	-	259	148271555	phnK	CMM_0376	-	phosphonates transport ATP-binding protein
378	 70.34	0	456059..456928	-	289	148271556	phnJ	CMM_0377	-	putative C-P (carbon-phosphorus) lyase
379	 74.82	0	456925..458040	-	371	148271557	phnI	CMM_0378	-	hypothetical protein
380	 79.94	+1	458040..458687	-	215	148271558	phnH	CMM_0379	-	putative C-P (carbon-phosphorus) lyase component
381	 76.42	0	458684..459175	-	163	148271559	phnG	CMM_0380	-	putative C-P (carbon-phosphorus lyase component
382	 74.66	0	459383..460120	+	245	148271560	phnF	CMM_0381	-	GntR family transcriptional regulator
383	 74.79	0	460220..461437	+	405	148271561	-	CMM_0382	-	putative multidrug efflux MFS permease
384	 74.75	0	461542..464274	+	910	148271562	ppcA	CMM_0383	-	hypothetical protein
385	 70.24	0	464495..464998	-	167	148271563	-	CMM_0384	-	Cro/CI family transcriptional regulator
386	 73.24	0	465146..466255	-	369	148271564	ltaE	CMM_0385	-	putative L-threonine aldolase
387	 72.60	0	466292..466948	-	218	148271565	-	CMM_0386	-	putative NTP pyrophosphohydrolase
388	 73.44	0	467019..468287	-	422	148271566	-	CMM_0387	-	putative NAD(FAD)-dependent dehydrogenase
389	 71.14	0	468608..469054	+	148	148271567	-	CMM_0388	-	putative alkaline shock protein
390	 74.24	0	469277..470095	+	272	148271568	aqpZ	CMM_0389	-	hypothetical protein
391	 77.00	+1	470190..471176	+	328	148271569	-	CMM_0390	-	hypothetical protein
392	 72.60	0	471212..471784	-	190	148271570	-	CMM_0391	-	hypothetical protein
393	 71.08	0	471875..472327	-	150	148271571	-	CMM_0392	-	hypothetical protein
394	 69.54	0	472374..473138	-	254	148271572	-	CMM_0393	-	hypothetical protein
395	 70.62	0	473188..474225	-	345	148271573	-	CMM_0394	-	hypothetical protein
396	 72.22	0	474322..474789	-	155	148271574	-	CMM_0395	-	hypothetical protein
397	 69.75	0	474786..475919	-	377	148271575	-	CMM_0396	-	putative Na+ efflux ABC transporter, permease component
398	 71.09	0	475916..476797	-	293	148271576	-	CMM_0397	-	putative ABC transporter, ATP-binding protein
399	 76.22	0	476999..477448	+	149	148271577	-	CMM_0398	-	hypothetical protein
400	 74.28	0	477439..478344	-	301	148271578	-	CMM_0399	-	hypothetical protein
401	 73.21	0	478341..479135	-	264	148271579	-	CMM_0400	-	putative short chain dehydrogenase
402	 76.50	0	479188..479970	+	260	148271580	-	CMM_0401	-	putative short-chain alcohol dehydrogenase
403	 72.00	0	479989..480438	-	149	148271581	-	CMM_0402	-	hypothetical protein
404	 71.24	0	480919..482340	+	473	148271582	glpT	CMM_0403	-	putative glycerol-3-phosphate MFS permease
405	 74.39	0	482363..483100	-	245	148271583	-	CMM_0404	-	putative two-component system response regulator
406	 74.40	0	483097..484506	-	469	148271584	-	CMM_0405	-	putative two-component system, sensor kinase
407	 72.44	0	484813..486405	+	530	148271585	-	CMM_0406	-	putative drug efflux MFS permease
408	 77.27	+1	486491..487339	-	282	148271586	-	CMM_0407	-	alpha/beta fold family hydrolase
409	 77.12	+1	487427..488134	+	235	148271587	-	CMM_0408	-	hypothetical protein
410	 72.55	0	488148..488861	-	237	148271588	-	CMM_0409	-	putative oxidoreductase
411	 76.43	0	488994..489413	+	139	148271589	-	CMM_0410	-	MerR family transcriptional regulator
412	 68.58	-1	489604..490074	+	156	148271590	-	CMM_0411	-	hypothetical protein
413	 65.56	-1	490088..490267	+	59	148271591	-	CMM_0412	-	hypothetical protein
414	 73.00	0	490374..490736	-	120	148271592	-	CMM_0413	-	hypothetical protein
415	 75.05	0	490826..491362	+	178	148271593	-	CMM_0414	-	MarR family transcriptional regulator
416	 72.34	0	491439..491861	+	140	148271594	osmC	CMM_0415	-	organic hydroperoxide resistance protein
417	 73.04	0	491861..492268	+	135	148271595	-	CMM_0416	-	hypothetical protein
418	 71.76	0	492406..492837	+	143	148271596	-	CMM_0417	-	hypothetical protein
419	 74.34	0	492847..493980	-	377	148271597	-	CMM_0418	-	putative epoxide hydrolase
420	 65.53	-1	493997..495226	-	409	148271598	-	CMM_0419	-	hypothetical protein
421	 71.20	0	495310..496368	-	352	148271599	-	CMM_0420	-	putative sugar ABC transporter, membrane spanning protein
422	 71.65	0	496365..497447	-	360	148271600	-	CMM_0421	-	putative sugar ABC transporter, permease component
423	 71.43	0	497444..499018	-	524	148271601	-	CMM_0422	-	putative sugar ABC transporter, ATPase component
424	 69.55	0	499112..500116	-	334	148271602	-	CMM_0423	-	putative sugar ABC transporter, binding protein
425	 74.79	0	500283..501956	-	557	148271603	-	CMM_0424	-	putative sugar uptake ABC transporter, ATPase component
426	 73.51	0	502082..503104	-	340	148271604	-	CMM_0425	-	LacI family transcription regulator
427	 69.07	0	503366..504322	+	318	148271605	-	CMM_0426	-	manganese-containing catalase
428	 71.75	0	506213..506389	+	58	148271606	-	CMM_0427	-	hypothetical protein
429	 70.60	0	506602..509040	+	812	148271607	-	CMM_0428	-	putative phosphoketolase
430	 75.60	0	509091..509840	-	249	148271608	-	CMM_0429	-	hypothetical protein
431	 74.82	0	509932..511758	-	608	148271609	-	CMM_0430	-	hypothetical protein
432	 74.83	0	511928..514192	-	754	148271610	-	CMM_0431	-	putative hemagglutinin/hemolysin-related protein
433	 71.95	0	514407..515069	+	220	148271611	-	CMM_0432	-	hypothetical protein
434	 76.65	0	515083..516114	-	343	148271612	fepG	CMM_0433	-	putative iron-siderophore ABC transporter,permease component
435	 77.18	+1	516111..517118	-	335	148271613	fepD	CMM_0434	-	putative iron-siderophore ABC transporter,permease component
436	 75.49	0	517149..518225	+	358	148271614	fepB	CMM_0435	-	putative iron-siderophore ABC transporter,binding protein
437	 77.20	+1	518235..518756	-	173	148271615	-	CMM_0436	-	putative acetyltransferase
438	 74.27	0	518809..519558	+	249	148271616	-	CMM_0437	-	putative SAM-dependant methyltransferase
439	 77.69	+1	519626..520414	-	262	148271617	-	CMM_0438	-	putative hydrolase
440	 66.85	-1	520414..520944	-	176	148271618	padA	CMM_0439	-	putative phenolic acid decarboxylase
441	 78.04	+1	521008..521508	+	166	148271619	-	CMM_0440	-	hypothetical protein
442	 67.88	-1	521634..522209	+	191	148271620	-	CMM_0441	-	hypothetical protein
443	 68.13	-1	522274..522888	+	204	148271621	-	CMM_0442	-	hypothetical protein
444	 77.16	+1	522987..523577	-	196	148271622	-	CMM_0443	-	MarR family transcriptional regulator
445	 69.80	0	523574..525331	-	585	148271623	-	CMM_0444	-	MFS family transporter
446	 69.19	0	525500..525856	+	118	148271624	-	CMM_0445	-	hypothetical protein
447	 74.74	0	525870..527021	-	383	148271625	-	CMM_0446	-	putative peptidase
448	 73.79	0	527021..527329	-	102	148271626	-	CMM_0447	-	hypothetical protein
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.