version 1.0
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891 2984 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2885 73.47 0 3204043..3205512 - 489 148274063 - CMM_2879 - hypothetical protein 2886 74.77 0 3205613..3206044 - 143 148274064 - CMM_2880 - hypothetical protein 2887 78.07 +1 3206148..3207173 + 341 148274065 - CMM_2881 - LysR family transcriptional regulator 2888 73.50 0 3207204..3207935 - 243 148274066 - CMM_2882 - hypothetical protein 2889 73.28 0 3208085..3208432 + 115 148274067 - CMM_2883 - hypothetical protein 2890 70.01 0 3208462..3209358 - 298 148274068 ubiA CMM_2884 - prenyltransferase 2891 64.77 -2 3209351..3209719 - 122 148274069 crtY2 CMM_2885 - putative C50 carotenoid epsilon cyclase 2892 68.41 -1 3209716..3210060 - 114 148274070 crtY1 CMM_2886 - putative C50 carotenoid epsilon cyclase 2893 73.28 0 3210060..3212705 - 881 148274071 crtBI CMM_2887 - putative bifunctional phytoene synthase/phytoene dehydrogenase 2894 72.73 0 3212702..3213724 - 340 148274072 crtE CMM_2888 - putative geranylgeranyl pyrophosphate synthase 2895 73.16 0 3213817..3214401 + 194 148274073 idiA CMM_2889 - isopentenyl-diphosphate delta-isomerase 2896 74.18 0 3214474..3215352 - 292 148274074 - CMM_2890 - putative phospholipase 2897 79.83 +1 3215480..3216064 - 194 148274075 - CMM_2891 - MarR family transcriptional regulator 2898 75.13 0 3216142..3218220 + 692 148274076 - CMM_2892 - RND family transporter 2899 73.17 0 3218297..3219049 + 250 148274077 - CMM_2893 - putative short chain dehydrogenase/oxidoreductase 2900 79.15 +1 3219046..3219654 - 202 148274078 - CMM_2894 - TetR family transcriptional regulator 2901 75.87 0 3219715..3220203 + 162 148274079 - CMM_2895 - hypothetical protein 2902 72.58 0 3220506..3221165 - 219 148274080 - CMM_2896 - hypothetical protein 2903 71.12 0 3221309..3222004 - 231 148274081 - CMM_2897 - hypothetical protein 2904 71.68 0 3222082..3223197 - 371 148274082 aldA CMM_2898 - putative L-alanine dehydrogenase 2905 72.53 0 3223363..3223857 + 164 148274083 - CMM_2899 - leucine-responsive regulatory protein 2906 67.66 -1 3223871..3224476 - 201 148274084 dcd CMM_2900 - deoxycytidine triphosphate deaminase 2907 52.13 -2 3224825..3227245 + 806 148274085 - CMM_2901 - hypothetical protein 2908 60.46 -2 3228028..3228462 - 144 148274086 - CMM_2902 - hypothetical protein 2909 70.24 0 3228643..3229398 + 251 148274087 - CMM_2903 - putative ABC transporter, ATP-binding protein 2910 71.59 0 3229398..3230696 + 432 148274088 - CMM_2904 - hypothetical protein 2911 72.76 0 3230693..3231316 + 207 148274089 - CMM_2905 - hypothetical protein 2912 73.20 0 3231313..3232077 - 254 148274090 - CMM_2906 - GntR family transcriptional regulator 2913 71.68 0 3232226..3232744 + 172 148274091 gntK CMM_2907 - putative gluconokinase 2914 69.45 0 3232827..3234227 + 466 148274092 gntP CMM_2908 - gluconate permease 2915 78.30 +1 3234224..3234799 - 191 148274093 - CMM_2909 - putative pyridoxamine 5-phosphate oxidase 2916 77.04 +1 3234844..3235653 - 269 148274094 - CMM_2910 - putative DNA glycosylase/endonuclease VIII 2917 70.35 0 3235699..3236730 - 343 148274095 - CMM_2911 - hypothetical protein 2918 72.02 0 3237001..3237747 + 248 148274096 - CMM_2912 - putative short-chain dehydrogenase/oxidoreductase 2919 75.22 0 3237806..3238822 + 338 148274097 - CMM_2913 - putative oxidoreductase 2920 72.01 0 3238887..3239504 + 205 148274098 - CMM_2914 - putative reductase 2921 69.05 0 3239594..3240769 - 391 148274099 - CMM_2915 - putative Zn-dependant dehydrogenase 2922 70.94 0 3241144..3241494 - 116 148274100 - CMM_2916 - hypothetical protein 2923 67.90 -1 3241651..3241974 - 107 148274101 - CMM_2917 - hypothetical protein 2924 67.16 -1 3242226..3242429 + 67 148274102 - CMM_2918 - hypothetical protein 2925 73.44 0 3242535..3243257 + 240 148274103 deoC CMM_2919 - deoxyribose-phosphate aldolase 2926 76.00 0 3243257..3244552 + 431 148274104 - CMM_2920 - putative aminopeptidase 2 2927 76.47 0 3244634..3245347 - 237 148274105 - CMM_2921 - hypothetical protein 2928 74.65 0 3245403..3246053 + 216 148274106 - CMM_2922 - putative dienelactone hydrolase 2929 68.10 -1 3246154..3246573 + 139 148274107 - CMM_2923 - hypothetical protein 2930 77.73 +1 3246688..3247383 + 231 148274108 - CMM_2924 - hypotheical membrane protein 2931 69.20 0 3247415..3248716 - 433 148274109 - CMM_2925 - putative helicase 2932 74.71 0 3248847..3249866 + 339 148274110 - CMM_2926 - hypothetical protein 2933 71.79 0 3249982..3250410 + 142 148274111 - CMM_2927 - hypothetical protein 2934 74.14 0 3250434..3251276 - 280 148274112 fecE CMM_2928 - putative iron-siderophore ABC transporter, ATP-binding protein 2935 77.24 +1 3251311..3252417 - 368 148274113 fecD2 CMM_2929 - putative iron-siderophore ABC transporter,permease component 2936 77.15 +1 3252414..3253472 - 352 148274114 fecC2 CMM_2930 - putative iron-siderophore ABC transporter,permease component 2937 72.04 0 3253575..3254579 + 334 148274115 fecB2 CMM_2931 - putative iron-siderophore ABC transporter,substrate-binding protein 2938 74.96 0 3254708..3255382 + 224 148274116 - CMM_2932 - hypothetical protein 2939 71.41 0 3255416..3257395 - 659 148274117 - CMM_2933 - membrane protein, putative copper export protein 2940 70.14 0 3257527..3257814 - 95 148274118 hupB CMM_2934 - putative DNA-binding protein HU 2941 69.93 0 3257946..3258251 - 101 148274119 rpsN CMM_2935 - 30S ribosomal protein S14 2942 64.29 -2 3258254..3258421 - 55 148274120 rpmG CMM_2936 - 50S ribosomal protein L33 2943 63.71 -2 3258421..3258657 - 78 148274121 rpmB CMM_2937 - 50S ribosomal protein L28 2944 74.89 0 3258872..3259321 - 149 148274122 furB CMM_2938 - ferric uptake regulator family protein 2945 70.77 0 3259318..3260244 - 308 148274123 - CMM_2939 - putative metal ABC transporter, permease component 2946 74.09 0 3260241..3261116 - 291 148274124 - CMM_2940 - putative metal ABC transporter, ATP-binding protein 2947 70.75 0 3261113..3262066 - 317 148274125 - CMM_2941 - putative metal ABC transporter, substrate-binding protein 2948 72.16 0 3262136..3263536 - 466 148274126 - CMM_2942 - branched-chain alpha-keto acid dehydrogenase subunit E2 2949 71.50 0 3263577..3264632 - 351 148274127 - CMM_2943 - putative 2-keto acid dehydrogenase,dehydrogenase E1 beta component 2950 71.34 0 3264629..3265741 - 370 148274128 - CMM_2944 - putative 2-keto acid dehydrogenase,dehydrogenase E1 beta component 2951 74.10 0 3265751..3266866 - 371 148274129 hisC2 CMM_2945 - putative aminotransferase 2952 67.68 -1 3266937..3267332 + 131 148274130 - CMM_2946 - hypothetical protein 2953 77.49 +1 3267341..3268615 - 424 148274131 - CMM_2947 - hypothetical protein 2954 78.59 +1 3268612..3268938 - 108 148274132 - CMM_2948 - hypothetical protein 2955 72.73 0 3269071..3269598 + 175 148274133 - CMM_2949 - putative protein-tyrosine-phosphatase 2956 70.93 0 3269612..3270994 + 460 148274134 purB CMM_2950 - adenylosuccinate lyase 2957 70.37 0 3271053..3271322 - 89 148274135 - CMM_2951 - hypothetical protein 2958 75.65 0 3271325..3271981 - 218 148274136 - CMM_2952 - hypothetical protein 2959 73.90 0 3272339..3273223 + 294 148274137 ppgK2 CMM_2953 - putative polyphosphate glucokinase 2960 79.30 +1 3273314..3274429 + 371 148274138 - CMM_2954 - putative glycerate kinase 2961 77.91 +1 3274446..3275672 - 408 148274139 - CMM_2955 - putative glycosyl transferase 2962 74.87 0 3275841..3276230 + 129 148274140 - CMM_2956 - hypothetical protein 2963 70.85 0 3276287..3277912 + 541 148274141 prfC CMM_2957 - putative peptide chain release factor 3 2964 71.90 0 3278067..3278372 + 101 148274142 - CMM_2958 - hypothetical protein 2965 68.55 -1 3278482..3279861 - 459 148274143 dnaB CMM_2959 - putative replicative DNA helicase 2966 66.00 -1 3280318..3280770 - 150 148274144 rplI CMM_2960 - 50S ribosomal protein L9 2967 66.67 -1 3280782..3281045 - 87 148274145 rpsR CMM_2961 - 30S ribosomal protein S18 2968 70.83 0 3281082..3281633 - 183 148274146 ssb CMM_2962 - single-strand DNA-binding protein 2969 68.17 -1 3281637..3282101 - 154 148274147 rpsF CMM_2963 - 30S ribosomal protein S6 2970 72.89 0 3282265..3283695 - 476 148274148 pcnA CMM_2964 - putative RNA nucleotidyltransferase 2971 75.33 0 3283789..3286086 + 765 148274149 - CMM_2965 - hypothetical protein 2972 70.96 0 3286123..3287751 + 542 148274150 - CMM_2966 - MOP family membrane protein 2973 70.62 0 3287908..3288945 + 345 148274151 trxB1 CMM_2967 - putative thioredoxin reductase 2974 64.81 -2 3289013..3289336 + 107 148274152 trxA CMM_2968 - putative thioredoxin 2975 69.84 0 3289507..3290829 + 440 148274153 - CMM_2969 - transcriptional regulator 2976 72.98 0 3290873..3291838 + 321 148274154 ddlB CMM_2970 - putative D-alanine-D-alanine ligase 2977 69.49 0 3291891..3292880 - 329 148274155 parB1 CMM_2971 - putative chromosome partitioning protein 2978 62.70 -2 3292880..3293761 - 293 148274156 parA CMM_2972 - putative chromosome partitioning protein 2979 66.98 -1 3293912..3294547 - 211 148274157 gidB CMM_2973 - glucose-inhibited division protein B 2980 64.70 -2 3295096..3295653 - 185 148274158 - CMM_2974 - putative DNA/RNA binding protein 2981 64.59 -2 3295650..3296612 - 320 148274159 - CMM_2975 - putative inner membrane protein translocase component YidC 2982 67.31 -1 3296623..3296934 - 103 148274160 - CMM_2976 - hypothetical protein 2983 67.25 -1 3296931..3297272 - 113 148274161 rnpA CMM_2977 - putative RNAse P, protein component 2984 68.12 -1 3297276..3297413 - 45 148274162 rpmH CMM_2978 - hypothetical protein 72.78 MEAN 3.94 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0