IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2737	 69.88	0	3062450..3063445	+	331	148273915	-	CMM_2731	-	putative sugar ABC transporter, permease component
2738	 69.75	0	3063473..3063796	-	107	148273916	-	CMM_2732	-	exporter DMT family membrane protein
2739	 71.74	0	3063923..3065281	-	452	148273917	-	CMM_2733	-	putative sugar ABC transporter, substrate binding protein
2740	 76.21	0	3065381..3066292	-	303	148273918	-	CMM_2734	-	putative esterase
2741	 71.53	0	3066305..3067291	-	328	148273919	glpX	CMM_2735	-	fructose 1,6-bisphosphatase II
2742	 72.93	0	3067350..3068483	-	377	148273920	-	CMM_2736	-	AI-E2 family membrane protein
2743	 74.97	0	3068672..3069394	-	240	148273921	-	CMM_2737	-	putative peptide ABC transporter, ATP-binding protein
2744	 75.87	0	3069391..3070488	-	365	148273922	-	CMM_2738	-	putative peptide ABC transporter, permease component
2745	 76.62	0	3070638..3071813	+	391	148273923	-	CMM_2739	-	putative two component system, sensor kinase
2746	 75.36	0	3071814..3072434	+	206	148273924	-	CMM_2740	-	putative two-component system, response regulator
2747	 79.90	+1	3072689..3073270	-	193	148273925	-	CMM_2741	-	hypothetical protein
2748	 75.23	0	3073439..3074080	+	213	148273926	-	CMM_2742	-	putative hydrolase
2749	 72.29	0	3074136..3074864	-	242	148273927	-	CMM_2743	-	hypothetical protein
2750	 75.07	0	3074915..3075628	-	237	148273928	-	CMM_2744	-	hypothetical protein
2751	 74.10	0	3076020..3076745	+	241	148273929	-	CMM_2745	-	putative F420-dependent NADP reductase
2752	 71.66	0	3076755..3077555	+	266	148273930	-	CMM_2746	-	membrane protein, putative permease
2753	 73.33	0	3077633..3077902	+	89	148273931	-	CMM_2747	-	Cro/CI family transcriptional regulator
2754	 72.65	0	3077895..3079214	+	439	148273932	-	CMM_2748	-	hypothetical protein
2755	 74.92	0	3079341..3079994	+	217	148273933	-	CMM_2749	-	hypothetical protein
2756	 75.24	0	3080032..3080556	+	174	148273934	-	CMM_2750	-	hypothetical protein
2757	 69.65	0	3080942..3082618	+	558	148273935	kdpA	CMM_2751	-	potassium-transporting ATPase subunit A
2758	 71.87	0	3082615..3084765	+	716	148273936	kdpB	CMM_2752	-	putative potassium-transporting ATPase B chain,P-type ATPase
2759	 73.23	0	3084808..3085416	+	202	148273937	kdpC	CMM_2753	-	putative potassium-transporting ATPase C chain,P-type ATPase
2760	 74.91	0	3085448..3087994	+	848	148273938	kdpD	CMM_2754	-	putative two-component system, sensor kinase
2761	 73.19	0	3087991..3088695	+	234	148273939	kdpE	CMM_2755	-	putative two-component system, response regulator
2762	 75.00	0	3088749..3089528	+	259	148273940	-	CMM_2756	-	putative esterase/lipase
2763	 72.22	0	3089570..3089929	+	119	148273941	-	CMM_2757	-	hypothetical protein
2764	 62.38	-2	3089943..3090152	-	69	148273942	-	CMM_2758	-	hypothetical protein
2765	 73.06	0	3090292..3091683	+	463	148273943	-	CMM_2759	-	DNA repair protein RadA
2766	 72.38	0	3091723..3092037	-	104	148273944	-	CMM_2760	-	ArsR family transcriptional regulator
2767	 67.30	-1	3092149..3092307	-	52	148273945	-	CMM_2761	-	hypothetical protein
2768	 72.97	0	3092425..3093090	-	221	148273946	-	CMM_2762	-	hypothetical protein
2769	 69.98	0	3093169..3093711	-	180	148273947	-	CMM_2763	-	N-acetylglutamate synthase
2770	 75.82	0	3093763..3094035	-	90	148273948	-	CMM_2764	-	hypothetical protein
2771	 75.97	0	3094037..3095713	-	558	148273949	-	CMM_2765	-	putative two-component system, sensor kinase
2772	 70.54	0	3095710..3096483	-	257	148273950	-	CMM_2766	-	putative two-component system, response regulator
2773	 74.97	0	3096554..3097384	-	276	148273951	-	CMM_2767	-	hypothetical protein
2774	 65.01	-1	3097455..3098483	-	342	148273952	-	CMM_2768	-	membrane protein, putative exporter
2775	 72.42	0	3098668..3099606	-	312	148273953	-	CMM_2769	-	hypothetical protein
2776	 72.35	0	3099603..3100676	-	357	148273954	-	CMM_2770	-	hypothetical protein
2777	 74.07	0	3100799..3101581	-	260	148273955	-	CMM_2771	-	putative multidrug ABC transporter, permease component
2778	 77.64	+1	3101578..3102534	-	318	148273956	-	CMM_2772	-	putative ABC transporter, ATP-binding protein
2779	 76.78	+1	3102527..3103495	-	322	148273957	-	CMM_2773	-	putative nitroreductase
2780	 76.09	0	3103554..3104816	-	420	148273958	-	CMM_2774	-	hypothetical protein
2781	 76.32	0	3104813..3105724	-	303	148273959	-	CMM_2775	-	hypothetical protein
2782	 72.30	0	3105735..3105947	-	70	148273960	-	CMM_2776	-	hypothetical protein
2783	 72.85	0	3106119..3106781	+	220	148273961	-	CMM_2777	-	hypothetical protein
2784	 73.98	0	3106979..3108031	+	350	148273962	-	CMM_2778	-	putative zinc-dependant oxidoreductase
2785	 77.89	+1	3108196..3109407	-	403	148273963	-	CMM_2779	-	putative carboxylesterase
2786	 76.33	0	3109404..3110396	-	330	148273964	-	CMM_2780	-	hypothetical protein
2787	 67.27	-1	3110396..3111220	-	274	148273965	-	CMM_2781	-	putative sugar ABC transporter, permease component
2788	 70.18	0	3111217..3112212	-	331	148273966	-	CMM_2782	-	putative sugar ABC transporter, permease component
2789	 69.56	0	3112209..3113558	-	449	148273967	-	CMM_2783	-	putative sugar ABC transporter, substrate binding protein
2790	 74.86	0	3113760..3114845	+	361	148273968	-	CMM_2784	-	LacI family transcriptional regulator
2791	 75.88	0	3114871..3115467	-	198	148273969	-	CMM_2785	-	putative acetyltransferase
2792	 69.14	0	3115572..3116258	-	228	148273970	rplA	CMM_2786	-	50S ribosomal protein L1
2793	 66.44	-1	3116358..3116789	-	143	148273971	rplK	CMM_2787	-	50S ribosomal protein L11
2794	 68.62	-1	3116843..3117865	-	340	148273972	nusG	CMM_2788	-	putative transcription antitermination protein
2795	 64.84	-2	3118053..3118325	-	90	148273973	secE	CMM_2789	-	preprotein translocase subunit SecE
2796	 71.79	0	3118661..3119890	+	409	148273974	aspC	CMM_2790	-	aspartate aminotransferase
2797	 75.32	0	3119924..3121078	-	384	148273975	murB	CMM_2791	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2798	 73.56	0	3121086..3121520	-	144	148273976	-	CMM_2792	-	putative dehydratase
2799	 73.78	0	3121517..3121966	-	149	148273977	-	CMM_2793	-	hypothetical protein
2800	 64.37	-2	3122136..3122222	-	28	148273978	-	CMM_2794	-	hypothetical protein
2801	 72.73	0	3122592..3122789	-	65	148273979	-	CMM_2795	-	hypothetical protein
2802	 72.52	0	3123286..3124224	-	312	148273980	-	CMM_2796	-	putative oxidoreductase
2803	 72.99	0	3124385..3126124	+	579	148273981	aglC	CMM_2797	-	alpha-glucosidase
2804	 75.86	0	3126205..3127389	-	394	148273982	-	CMM_2798	-	M23 family membrane bound metalloendopeptidase
2805	 75.19	0	3127615..3128424	-	269	148273983	suhB	CMM_2799	-	putative inositol-1-monophosphatase
2806	 73.28	0	3128470..3129210	-	246	148273984	-	CMM_2800	-	hypothetical protein
2807	 76.39	0	3129273..3130259	-	328	148273985	-	CMM_2801	-	putative oxidoreductase
2808	 64.21	-2	3130585..3131073	+	162	148273986	-	CMM_2802	-	hypothetical protein
2809	 67.89	-1	3131155..3132624	+	489	148273987	-	CMM_2803	-	putative phospholipase, cardiolipin synthetase
2810	 71.72	0	3132652..3133146	-	164	148273988	-	CMM_2804	-	MarR family transcriptional regulator
2811	 81.43	+2	3133271..3133954	-	227	148273989	-	CMM_2805	-	hypothetical protein
2812	 70.75	0	3134092..3135462	-	456	148273990	-	CMM_2806	-	putative ferredoxin/ferredoxin-NADP reductase
2813	 73.84	0	3135553..3136626	-	357	148273991	menX	CMM_2807	-	putative polyprenyl diphosphate synthase
2814	 71.43	0	3136662..3137396	-	244	148273992	menH	CMM_2808	-	putative menaquinone biosynthesis methyltransferase
2815	 78.53	+1	3137404..3140142	-	912	148273994	-	CMM_2809	-	putative sugar MFS permease
2816	 77.02	+1	3137557..3138831	+	424	148273993	menF	CMM_2810	-	putative isochorismate synthase
2817	 76.92	+1	3140139..3140684	-	181	148273995	-	CMM_2811	-	hypothetical protein
2818	 76.51	0	3140800..3142566	-	588	148273996	menD	CMM_2812	-	menaquinone biosynthesis bifunctional protein menD
2819	 73.52	0	3142573..3142995	-	140	148273997	-	CMM_2813	-	hypothetical protein
2820	 75.07	0	3143135..3143515	+	126	148273998	-	CMM_2814	-	hypothetical protein
2821	 78.84	+1	3143526..3143903	-	125	148273999	-	CMM_2815	-	hypothetical protein
2822	 71.98	0	3143909..3144793	-	294	148274000	menA	CMM_2816	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2823	 75.17	0	3144952..3145704	-	250	148274001	-	CMM_2817	-	putative mutase
2824	 77.89	+1	3145803..3146711	-	302	148274002	-	CMM_2818	-	hypothetical protein
2825	 71.41	0	3146734..3148716	-	660	148274003	-	CMM_2819	-	metallopeptidase family M13
2826	 69.57	0	3148824..3149030	+	68	148274004	-	CMM_2820	-	Cro/CI family transcriptional regulator
2827	 71.14	0	3149014..3149415	+	133	148274005	-	CMM_2821	-	hypothetical protein
2828	 71.57	0	3149521..3150804	+	427	148274006	-	CMM_2822	-	xanthine/uracil family permease
2829	 75.29	0	3150990..3152369	+	459	148274007	-	CMM_2823	-	hypothetical protein
2830	 77.37	+1	3152348..3154141	-	597	148274008	-	CMM_2824	-	amidase
2831	 74.86	0	3154138..3154869	-	243	148274009	-	CMM_2825	-	hypothetical protein
2832	 74.95	0	3154866..3156242	-	458	148274010	-	CMM_2826	-	cytosine permease
2833	 76.67	0	3156391..3157080	+	229	148274011	-	CMM_2827	-	GntR family transcriptional regulator
2834	 75.25	0	3157101..3157799	-	232	148274012	-	CMM_2828	-	putative phosphatase
2835	 73.49	0	3157838..3158350	-	170	148274013	-	CMM_2829	-	hypothetical protein
2836	 78.48	+1	3158485..3159390	+	301	148274014	mmuM	CMM_2830	-	homocysteine methyltransferase
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.