IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
229	 73.70	0	286773..287369	-	198	148271407	-	CMM_0228	-	TetR family transcriptional regulator
230	 74.65	0	287456..289510	-	684	148271408	-	CMM_0229	-	putative acyl esterase
231	 75.49	0	289507..291240	-	577	148271409	-	CMM_0230	-	putative peptide ABC transporter, ATP-binding protein
232	 72.22	0	291237..292118	-	293	148271410	-	CMM_0231	-	putative peptide ABC transporter, permease component
233	 71.27	0	292115..293134	-	339	148271411	-	CMM_0232	-	putative peptide ABC transporter, permease component
234	 70.53	0	293131..294786	-	551	148271412	-	CMM_0233	-	putative peptide ABC transporter, substrate-binding protein
235	 71.40	0	294887..295393	-	168	148271413	-	CMM_0234	-	hypothetical protein
236	 72.00	0	295483..296382	-	299	148271414	-	CMM_0235	-	hypothetical protein
237	 71.49	0	296480..298468	-	662	148271415	-	CMM_0236	-	hypothetical protein
238	 73.17	0	298681..299049	-	122	148271416	-	CMM_0237	-	hypothetical protein
239	 74.02	0	299132..300355	-	407	148271417	-	CMM_0238	-	putative bicyclomycin efflux MFS permease
240	 69.82	0	300554..300775	+	73	148271418	-	CMM_0239	-	hypothetical protein
241	 72.32	0	300958..301788	+	276	148271419	-	CMM_0240	-	putative short-chain alcohol dehydrogenase
242	 70.70	0	301826..302098	-	90	148271420	-	CMM_0241	-	hypothetical protein
243	 76.40	0	302169..302795	-	208	148271421	ogtA	CMM_0242	-	6-O-methylguanine-DNA methyltransferase
244	 77.21	+1	302792..303322	-	176	148271422	sigY	CMM_0243	-	hypothetical protein
245	 76.29	0	303648..304385	+	245	148271423	-	CMM_0244	-	putative two-component system response regulator
246	 76.36	0	304664..305953	+	429	148271424	-	CMM_0245	-	hypothetical protein
247	 53.90	-2	306397..310155	+	1252	148271425	-	CMM_0246	-	hypothetical protein
248	 73.91	0	310377..311591	+	404	148271426	-	CMM_0247	-	putative oxidoreductase/dehydrogenase
249	 79.92	+1	311642..312358	+	238	148271427	-	CMM_0248	-	hypothetical protein
250	 77.68	+1	312537..313244	+	235	148271428	-	CMM_0249	-	hypothetical protein
251	 75.35	0	313241..314725	+	494	148271429	-	CMM_0250	-	hypothetical protein
252	 74.56	0	314775..315788	-	337	148271430	-	CMM_0251	-	LacI family transcriptional regulator
253	 70.95	0	315851..316573	-	240	148271431	-	CMM_0252	-	hypothetical protein
254	 78.17	+1	316624..317823	-	399	148271432	-	CMM_0253	-	hypothetical protein
255	 73.02	0	317976..318227	-	83	148271433	-	CMM_0254	-	hypothetical protein
256	 72.52	0	318363..319832	+	489	148271434	-	CMM_0255	-	putative MFS permease
257	 76.10	0	320052..320687	-	211	148271435	-	CMM_0256	-	hypothetical protein
258	 73.92	0	320698..321345	-	215	148271436	-	CMM_0257	-	MerR family transcriptional regulator
259	 74.24	0	321541..322134	-	197	148271437	-	CMM_0258	-	hypothetical protein
260	 77.14	+1	322313..322837	+	174	148271438	crcB1	CMM_0259	-	putative membrane protein involved in chromosome condensation
261	 76.38	0	322834..323214	+	126	148271439	crcB2	CMM_0260	-	putative membrane protein involved in chromosome condensation
262	 78.20	+1	323211..323687	+	158	148271440	-	CMM_0261	-	putative acetyltransferase
263	 76.19	0	323697..324284	+	195	148271441	-	CMM_0262	-	putative NTP pyrophosphohydrolases
264	 76.49	0	324294..325301	-	335	148271442	ddlA	CMM_0263	-	putative D-alanine--D-alanine ligase
265	 77.22	+1	325348..326058	-	236	148271443	-	CMM_0264	-	hypothetical protein
266	 70.99	0	326061..326615	-	184	148271444	-	CMM_0265	-	hypothetical protein
267	 71.21	0	326881..328224	+	447	148271445	-	CMM_0266	-	hypothetical protein
268	 74.71	0	328221..329078	+	285	148271446	-	CMM_0267	-	RpiR family transcriptional regulator
269	 77.25	+1	329139..330083	+	314	148271447	-	CMM_0268	-	putative hydroxyacid dehydrogenase
270	 75.27	0	330080..331660	+	526	148271448	-	CMM_0269	-	putative aldehyde dehydrogenase
271	 70.22	0	331874..333112	+	412	148271449	-	CMM_0270	-	putative sugar ABC transporter, substrate binding protein
272	 68.79	-1	333112..334101	+	329	148271450	-	CMM_0271	-	putative sugar ABC transporter, permease component
273	 69.63	0	334094..334969	+	291	148271451	-	CMM_0272	-	putative sugar ABC transporter, permease component
274	 70.17	0	335052..335822	+	256	148271452	-	CMM_0273	-	trehalose utilization-related protein
275	 75.85	0	335819..337048	+	409	148271453	-	CMM_0274	-	putative dehydrogenase
276	 77.40	+1	337069..338382	+	437	148271454	-	CMM_0275	-	ROK family transcriptional regulator
277	 74.12	0	338379..339035	+	218	148271455	-	CMM_0276	-	hypothetical protein
278	 76.95	+1	339073..340074	-	333	148271456	-	CMM_0277	-	hypothetical protein
279	 76.65	0	340257..340847	+	196	148271457	-	CMM_0278	-	putative chorismate mutase
280	 75.22	0	340959..341297	-	112	148271458	-	CMM_0279	-	hypothetical protein
281	 73.78	0	341356..341847	-	163	148271459	-	CMM_0280	-	hypothetical protein
282	 75.72	0	342105..342899	-	264	148271460	-	CMM_0281	-	putative acetyltransferase
283	 77.69	+1	342905..345463	-	852	148271461	-	CMM_0282	-	hypothetical protein
284	 74.45	0	345561..346151	+	196	148271462	-	CMM_0283	-	putative adenylate kinase
285	 76.87	+1	346118..346705	-	195	148271463	-	CMM_0284	-	hypothetical protein
286	 76.96	+1	346723..347499	-	258	148271464	-	CMM_0285	-	permease DMT family
287	 74.64	0	347748..348374	+	208	148271465	-	CMM_0286	-	TetR family transcriptional regulator
288	 74.90	0	348371..348868	+	165	148271466	-	CMM_0287	-	diadenosine tetraphosphate hydrolase
289	 73.39	0	348940..349608	+	222	148271467	-	CMM_0288	-	putative oxidoreductase
290	 71.28	0	349694..350386	-	230	148271468	-	CMM_0289	-	hypothetical protein
291	 73.77	0	350578..351084	+	168	148271469	sigL	CMM_0290	-	RNA polymerase ECF-subfamily sigma factor
292	 76.39	0	351081..351872	+	263	148271470	-	CMM_0291	-	hypothetical protein
293	 72.42	0	352171..352761	-	196	148271471	-	CMM_0292	-	hypothetical protein
294	 70.25	0	352835..354202	+	455	148271472	-	CMM_0293	-	putative MFS permease
295	 76.39	0	354199..354702	-	167	148271473	-	CMM_0294	-	hypothetical protein
296	 74.18	0	354731..355741	-	336	148271474	-	CMM_0295	-	LacI family transcriptional regulator
297	 69.45	0	355969..357261	+	430	148271475	-	CMM_0296	-	putative sugar ABC transporter, substrate-binding protein
298	 67.54	-1	357272..358297	+	341	148271476	-	CMM_0297	-	putative sugar ABC transporter, permease component
299	 67.33	-1	358294..359199	+	301	148271477	-	CMM_0298	-	putative sugar ABC transporter, permease component
300	 75.31	0	359196..361577	+	793	148271478	bglX	CMM_0299	-	putative beta-glycosidase
301	 78.21	+1	361717..362565	-	282	148271479	-	CMM_0300	-	putative nucleoside-diphosphate-sugar epimerase
302	 79.07	+1	362661..363410	+	249	148271480	-	CMM_0301	-	TetR family transcriptional regulator
303	 75.29	0	363450..364307	-	285	148271481	-	CMM_0302	-	Cro/CI family transcriptional regulator
304	 72.25	0	364409..365089	+	226	148271482	-	CMM_0303	-	short chain oxidoreductase
305	 75.94	0	365157..365555	+	132	148271483	-	CMM_0304	-	hypothetical protein
306	 75.49	0	365594..366160	+	188	148271484	-	CMM_0305	-	hypothetical protein
307	 74.83	0	366519..367412	+	297	148271485	-	CMM_0306	-	hypothetical protein
308	 75.85	0	367435..367848	-	137	148271486	-	CMM_0307	-	putative sulfurtransferase
309	 73.27	0	368106..369347	+	413	148271487	-	CMM_0308	-	hypothetical protein
310	 75.47	0	369387..369920	-	177	148271488	-	CMM_0309	-	hypothetical protein
311	 69.65	0	370093..371634	+	513	148271489	abfA1	CMM_0310	-	hypothetical protein
312	 73.52	0	371722..371940	-	72	148271490	-	CMM_0311	-	hypothetical protein
313	 74.28	0	372277..372867	-	196	148271491	-	CMM_0312	-	putative acetyltransferase
314	 76.61	0	372914..373255	-	113	148271492	-	CMM_0313	-	hypothetical protein
315	 77.65	+1	373355..374428	+	357	148271493	-	CMM_0314	-	hypothetical protein
316	 77.45	+1	374511..375521	+	336	148271494	-	CMM_0315	-	putative thioredoxin reductase
317	 71.73	0	375588..377780	+	730	148271495	clpY	CMM_0316	-	ATPase with chaperone activity, ATP-binding subunit
318	 74.31	0	377847..380030	-	727	148271496	agaA	CMM_0317	-	hypothetical protein
319	 72.92	0	380141..380620	+	159	148271497	-	CMM_0318	-	putative transcriptional regulator
320	 74.17	0	380682..381347	-	221	148271498	-	CMM_0319	-	hypothetical protein
321	 76.64	0	381414..381764	-	116	148271499	-	CMM_0320	-	hypothetical protein
322	 71.64	0	381880..382884	+	334	148271500	-	CMM_0321	-	putative oxidoreductase
323	 77.25	+1	382892..384100	+	402	148271501	-	CMM_0322	-	putative dipeptidase
324	 79.98	+1	384097..384960	+	287	148271502	-	CMM_0323	-	GNAT family acetyltransferase
325	 77.85	+1	384894..386636	-	580	148271503	-	CMM_0324	-	putative ABC transporter (fused permease/ATPase)
326	 77.98	+1	386636..388456	-	606	148271504	-	CMM_0325	-	putative ABC transporter (fused permease/ATPase)
327	 77.17	+1	388453..389223	-	256	148271505	-	CMM_0326	-	hypothetical protein
328	 78.72	+1	389220..390032	-	270	148271506	-	CMM_0327	-	putative thioesterase
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.