IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2621	 61.33	-2	2941243..2941542	-	99	148273799	rplW	CMM_2615	-	50S ribosomal protein L23
2622	 69.25	0	2941539..2942195	-	218	148273800	rplD	CMM_2616	-	50S ribosomal protein L4
2623	 67.74	-1	2942198..2942851	-	217	148273801	rplC	CMM_2617	-	50S ribosomal protein L3
2624	 63.43	-2	2942860..2943168	-	102	148273802	rpsJ	CMM_2618	-	30S ribosomal protein S10
2625	 71.41	0	2943609..2944577	-	322	148273803	-	CMM_2619	-	putative topoisomerase IB
2626	 66.58	-1	2944727..2945920	-	397	148273804	tufA	CMM_2620	-	elongation factor Tu
2627	 65.39	-1	2946034..2948148	-	704	148273805	fusA	CMM_2621	-	elongation factor G
2628	 67.30	-1	2948196..2948666	-	156	148273806	rpsG	CMM_2622	-	30S ribosomal protein S7
2629	 68.27	-1	2948666..2949040	-	124	148273807	rpsL	CMM_2623	-	30S ribosomal protein S12
2630	 73.94	0	2949306..2949731	-	141	148273808	-	CMM_2624	-	hypothetical protein
2631	 74.82	0	2949751..2950743	-	330	148273809	-	CMM_2625	-	hypothetical protein
2632	 72.86	0	2950817..2951656	-	279	148273810	-	CMM_2626	-	putative polar amino acid ABC transporter, ATP-binding protein
2633	 68.17	-1	2951643..2952308	-	221	148273811	-	CMM_2627	-	putative polar amino acid ABC transporter,permease component
2634	 70.55	0	2952353..2953201	-	282	148273812	-	CMM_2628	-	putative polar amino acid ABC transporter,substrate-binding protein
2635	 74.69	0	2953410..2953895	-	161	148273813	-	CMM_2629	-	hypothetical protein
2636	 68.18	-1	2954078..2957977	-	1299	148273814	rpoC	CMM_2630	-	DNA-directed RNA polymerase subunit beta'
2637	 67.30	-1	2958026..2961514	-	1162	148273815	rpoB	CMM_2631	-	DNA-directed RNA polymerase subunit beta
2638	 76.08	0	2961820..2962488	+	222	148273816	-	CMM_2632	-	putative Zn-dependant hydrolase
2639	 73.66	0	2962541..2963398	+	285	148273817	-	CMM_2633	-	hypothetical protein
2640	 74.85	0	2963439..2964623	+	394	148273818	-	CMM_2634	-	hypothetical protein
2641	 73.58	0	2964688..2965164	+	158	148273819	-	CMM_2635	-	hypothetical protein
2642	 75.05	0	2965201..2965713	+	170	148273820	-	CMM_2636	-	hypothetical protein
2643	 78.32	+1	2965710..2966387	+	225	148273821	-	CMM_2637	-	hypothetical protein
2644	 64.69	-2	2966416..2966718	-	100	148273822	-	CMM_2638	-	hypothetical protein
2645	 80.54	+1	2966832..2967422	-	196	148273823	-	CMM_2639	-	hypothetical protein
2646	 74.85	0	2967406..2967906	-	166	148273824	-	CMM_2640	-	hypothetical protein
2647	 74.49	0	2967976..2968512	+	178	148273825	-	CMM_2641	-	hypothetical protein
2648	 75.76	0	2968514..2969041	-	175	148273826	-	CMM_2642	-	hypothetical protein
2649	 74.07	0	2969091..2969738	+	215	148273827	-	CMM_2643	-	hypothetical protein
2650	 73.43	0	2969846..2971516	+	556	148273828	-	CMM_2644	-	putative ATP-dependent helicase
2651	 75.16	0	2971696..2972319	+	207	148273829	-	CMM_2645	-	TetR family transcriptional regulator
2652	 72.61	0	2972390..2972944	-	184	148273830	-	CMM_2646	-	hypothetical protein
2653	 75.70	0	2973111..2973752	+	213	148273831	-	CMM_2647	-	putative phospholipase/carboxylesterase
2654	 75.03	0	2973833..2978653	+	1606	148273832	-	CMM_2648	-	putative ATP-dependent helicase
2655	 73.51	0	2978681..2979484	+	267	148273833	-	CMM_2649	-	putative endonuclease VIII/DNA glycosylase
2656	 70.12	0	2979603..2981135	-	510	148273834	-	CMM_2650	-	cationic amino acid permease APC family
2657	 76.88	+1	2981390..2982397	+	335	148273835	sigF	CMM_2651	-	putative RNA polymerase sigma factor, SigF-homolog (stress response/stationary phase sigma factor)
2658	 78.61	+1	2982466..2983068	-	200	148273836	-	CMM_2652	-	putative two-component system, sensor kinase/response regulator hybrid protein
2659	 76.26	0	2983279..2984091	-	270	148273837	-	CMM_2653	-	hypothetical protein
2660	 74.75	0	2984215..2984622	+	135	148273838	-	CMM_2654	-	hypothetical protein
2661	 68.85	0	2984687..2984869	+	60	148273839	-	CMM_2655	-	putative transcriptional regulator
2662	 76.00	0	2984985..2986892	+	635	148273840	-	CMM_2656	-	putative amidase
2663	 74.64	0	2986913..2988430	-	505	148273841	-	CMM_2657	-	putative phosphatase
2664	 74.48	0	2988519..2989901	-	460	148273842	-	CMM_2658	-	putative penicillin-binding protein
2665	 75.05	0	2989898..2990410	-	170	148273843	-	CMM_2659	-	MarR family transcriptional regulator
2666	 77.25	+1	2990469..2991677	+	402	148273844	-	CMM_2660	-	putative monooxygenase
2667	 74.51	0	2991847..2992254	+	135	148273845	-	CMM_2661	-	hypothetical protein
2668	 74.75	0	2992321..2992926	-	201	148273846	-	CMM_2662	-	putative nitroreductase
2669	 74.67	0	2993046..2994182	-	378	148273847	-	CMM_2663	-	putative oxidoreductase
2670	 71.31	0	2994179..2994910	-	243	148273848	-	CMM_2664	-	hypothetical protein
2671	 74.97	0	2995087..2995941	+	284	148273849	-	CMM_2665	-	hypothetical protein
2672	 71.88	0	2995954..2997852	-	632	148273850	-	CMM_2666	-	putative multidrug ABC transporter, fused permease and ATP-binding protein
2673	 76.00	0	2998206..2999030	+	274	148273851	-	CMM_2667	-	hypothetical protein
2674	 64.16	-2	2999145..2999423	-	92	148273852	-	CMM_2668	-	hypothetical protein
2675	 68.91	0	2999548..3000216	+	222	148273853	-	CMM_2669	-	putative two-component system response regulator
2676	 68.20	-1	3000417..3001199	-	260	148273854	-	CMM_2670	-	putative cell filamentation protein
2677	 68.60	-1	3001199..3001405	-	68	148273855	-	CMM_2671	-	hypothetical protein
2678	 73.01	0	3001534..3002652	+	372	148273856	-	CMM_2672	-	antibiotic immunity protein peptidase family S66 protein
2679	 74.21	0	3003259..3004305	+	348	148273857	-	CMM_2673	-	hypothetical protein
2680	 76.12	0	3004315..3005382	-	355	148273858	-	CMM_2674	-	putative glycosyl transferase
2681	 72.07	0	3005450..3006115	-	221	148273859	-	CMM_2675	-	hypothetical protein
2682	 77.30	+1	3006326..3007294	+	322	148273860	blaC	CMM_2676	-	putative beta-lactamase
2683	 78.37	+1	3007331..3007954	-	207	148273861	-	CMM_2677	-	TetR family transcriptional regulator
2684	 79.03	+1	3008020..3008658	+	212	148273862	-	CMM_2678	-	putative acetyltransferase
2685	 72.57	0	3008701..3008937	-	78	148273863	-	CMM_2679	-	hypothetical protein
2686	 75.16	0	3008983..3009453	+	156	148273864	-	CMM_2680	-	MarR family transcriptional regulator
2687	 73.88	0	3009517..3010362	+	281	148273865	-	CMM_2681	-	putative hydrolase
2688	 74.78	0	3010356..3011033	+	225	148273866	-	CMM_2682	-	hypothetical protein
2689	 77.84	+1	3011123..3012706	+	527	148273867	-	CMM_2683	-	putative bifunctional phosphatase/glycosyl transferase
2690	 75.41	0	3012715..3013755	+	346	148273868	-	CMM_2684	-	putative glycosyl transferase
2691	 77.33	+1	3013752..3015701	+	649	148273869	-	CMM_2685	-	putative bifunctional glycosyl transferase/isomerase
2692	 77.56	+1	3015698..3017101	+	467	148273870	-	CMM_2686	-	putative bifunctional ADP-heptose synthase/transferase
2693	 72.48	0	3017174..3017878	+	234	148273871	-	CMM_2687	-	putative short-chain dehydrogenase/oxidoreductase
2694	 58.00	-2	3018382..3019062	-	226	148273872	-	CMM_2688	-	hypothetical protein
2695	 72.75	0	3019687..3020064	-	125	148273873	-	CMM_2689	-	hypothetical protein
2696	 73.53	0	3020157..3020768	-	203	148273874	-	CMM_2690	-	hypothetical protein
2697	 74.35	0	3020952..3021953	+	333	148273875	-	CMM_2691	-	putative endoglucanase
2698	 74.33	0	3022066..3023475	+	469	148273876	-	CMM_2692	-	putative endoglucanase
2699	 75.80	0	3023600..3024913	+	437	148273877	-	CMM_2693	-	hypothetical protein
2700	 62.52	-2	3025105..3026142	+	345	148273878	-	CMM_2694	-	hypothetical protein
2701	 77.04	+1	3026264..3027400	-	378	148273879	-	CMM_2695	-	hypothetical protein
2702	 71.89	0	3027486..3028577	-	363	148273880	-	CMM_2696	-	hypothetical protein
2703	 66.35	-1	3028654..3029595	+	313	148273881	-	CMM_2697	-	putative sugar ABC transporter, permease component
2704	 68.03	-1	3029598..3030548	+	316	148273882	-	CMM_2698	-	putative sugar ABC transporter, permease component
2705	 68.36	-1	3030610..3031965	+	451	148273883	-	CMM_2699	-	putative sugar ABC transporter, substrate-binding protein
2706	 72.78	0	3032047..3033846	+	599	148273884	bgaB	CMM_2700	-	putative beta-galactosidase
2707	 76.98	+1	3033952..3035502	+	516	148273885	-	CMM_2701	-	hypothetical protein
2708	 75.72	0	3035499..3037055	+	518	148273886	-	CMM_2702	-	putative bifunctional sugar kinase/nucleotidyltransferase
2709	 68.23	-1	3037145..3037336	+	63	148273887	-	CMM_2703	-	hypothetical protein
2710	 71.21	0	3037437..3037766	-	109	148273888	-	CMM_2704	-	hypothetical protein
2711	 77.97	+1	3038021..3038533	+	170	148273889	-	CMM_2705	-	hypothetical protein
2712	 71.88	0	3038530..3039546	-	338	148273890	-	CMM_2706	-	hypothetical protein
2713	 66.48	-1	3039550..3040071	-	173	148273891	-	CMM_2707	-	hypothetical protein
2714	 71.78	0	3040244..3040732	-	162	148273892	-	CMM_2708	-	hypothetical protein
2715	 73.21	0	3040792..3041967	-	391	148273893	-	CMM_2709	-	M23 family metallopeptidase
2716	 77.54	+1	3041964..3042524	-	186	148273894	-	CMM_2710	-	hypothetical protein
2717	 75.54	0	3042524..3043921	-	465	148273895	-	CMM_2711	-	hypothetical protein
2718	 79.74	+1	3044186..3044797	+	203	148273896	-	CMM_2712	-	hypothetical protein
2719	 69.75	0	3044822..3045145	+	107	148273897	-	CMM_2713	-	hypothetical protein
2720	 72.97	0	3045207..3045968	+	253	148273898	-	CMM_2714	-	hypothetical protein
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.