version 1.0
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891 2984 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2611 67.00 -1 2936468..2937064 - 198 148273789 rplE CMM_2605 - 50S ribosomal protein L5 2612 66.11 -1 2937067..2937426 - 119 148273790 rplX CMM_2606 - 50S ribosomal protein L24 2613 63.69 -2 2937429..2937797 - 122 148273791 rplN CMM_2607 - 50S ribosomal protein L14 2614 65.66 -1 2937825..2938121 - 98 148273792 rpsQ CMM_2608 - 30S ribosomal protein S17 2615 66.67 -1 2938124..2938450 - 108 148273793 rpmC CMM_2609 - 50S ribosomal protein L29 2616 66.90 -1 2938450..2938869 - 139 148273794 rplP CMM_2610 - 50S ribosomal protein L16 2617 69.05 0 2938872..2939669 - 265 148273795 rpsC CMM_2611 - 30S ribosomal protein S3 2618 66.67 -1 2939669..2940061 - 130 148273796 rplV CMM_2612 - 50S ribosomal protein L22 2619 63.83 -2 2940087..2940368 - 93 148273797 rpsS CMM_2613 - 30S ribosomal protein S19 2620 68.81 -1 2940381..2941220 - 279 148273798 rplB CMM_2614 - 50S ribosomal protein L2 2621 61.33 -2 2941243..2941542 - 99 148273799 rplW CMM_2615 - 50S ribosomal protein L23 2622 69.25 0 2941539..2942195 - 218 148273800 rplD CMM_2616 - 50S ribosomal protein L4 2623 67.74 -1 2942198..2942851 - 217 148273801 rplC CMM_2617 - 50S ribosomal protein L3 2624 63.43 -2 2942860..2943168 - 102 148273802 rpsJ CMM_2618 - 30S ribosomal protein S10 2625 71.41 0 2943609..2944577 - 322 148273803 - CMM_2619 - putative topoisomerase IB 2626 66.58 -1 2944727..2945920 - 397 148273804 tufA CMM_2620 - elongation factor Tu 2627 65.39 -1 2946034..2948148 - 704 148273805 fusA CMM_2621 - elongation factor G 2628 67.30 -1 2948196..2948666 - 156 148273806 rpsG CMM_2622 - 30S ribosomal protein S7 2629 68.27 -1 2948666..2949040 - 124 148273807 rpsL CMM_2623 - 30S ribosomal protein S12 2630 73.94 0 2949306..2949731 - 141 148273808 - CMM_2624 - hypothetical protein 2631 74.82 0 2949751..2950743 - 330 148273809 - CMM_2625 - hypothetical protein 2632 72.86 0 2950817..2951656 - 279 148273810 - CMM_2626 - putative polar amino acid ABC transporter, ATP-binding protein 2633 68.17 -1 2951643..2952308 - 221 148273811 - CMM_2627 - putative polar amino acid ABC transporter,permease component 2634 70.55 0 2952353..2953201 - 282 148273812 - CMM_2628 - putative polar amino acid ABC transporter,substrate-binding protein 2635 74.69 0 2953410..2953895 - 161 148273813 - CMM_2629 - hypothetical protein 2636 68.18 -1 2954078..2957977 - 1299 148273814 rpoC CMM_2630 - DNA-directed RNA polymerase subunit beta' 2637 67.30 -1 2958026..2961514 - 1162 148273815 rpoB CMM_2631 - DNA-directed RNA polymerase subunit beta 2638 76.08 0 2961820..2962488 + 222 148273816 - CMM_2632 - putative Zn-dependant hydrolase 2639 73.66 0 2962541..2963398 + 285 148273817 - CMM_2633 - hypothetical protein 2640 74.85 0 2963439..2964623 + 394 148273818 - CMM_2634 - hypothetical protein 2641 73.58 0 2964688..2965164 + 158 148273819 - CMM_2635 - hypothetical protein 2642 75.05 0 2965201..2965713 + 170 148273820 - CMM_2636 - hypothetical protein 2643 78.32 +1 2965710..2966387 + 225 148273821 - CMM_2637 - hypothetical protein 2644 64.69 -2 2966416..2966718 - 100 148273822 - CMM_2638 - hypothetical protein 2645 80.54 +1 2966832..2967422 - 196 148273823 - CMM_2639 - hypothetical protein 2646 74.85 0 2967406..2967906 - 166 148273824 - CMM_2640 - hypothetical protein 2647 74.49 0 2967976..2968512 + 178 148273825 - CMM_2641 - hypothetical protein 2648 75.76 0 2968514..2969041 - 175 148273826 - CMM_2642 - hypothetical protein 2649 74.07 0 2969091..2969738 + 215 148273827 - CMM_2643 - hypothetical protein 2650 73.43 0 2969846..2971516 + 556 148273828 - CMM_2644 - putative ATP-dependent helicase 2651 75.16 0 2971696..2972319 + 207 148273829 - CMM_2645 - TetR family transcriptional regulator 2652 72.61 0 2972390..2972944 - 184 148273830 - CMM_2646 - hypothetical protein 2653 75.70 0 2973111..2973752 + 213 148273831 - CMM_2647 - putative phospholipase/carboxylesterase 2654 75.03 0 2973833..2978653 + 1606 148273832 - CMM_2648 - putative ATP-dependent helicase 2655 73.51 0 2978681..2979484 + 267 148273833 - CMM_2649 - putative endonuclease VIII/DNA glycosylase 2656 70.12 0 2979603..2981135 - 510 148273834 - CMM_2650 - cationic amino acid permease APC family 2657 76.88 +1 2981390..2982397 + 335 148273835 sigF CMM_2651 - putative RNA polymerase sigma factor, SigF-homolog (stress response/stationary phase sigma factor) 2658 78.61 +1 2982466..2983068 - 200 148273836 - CMM_2652 - putative two-component system, sensor kinase/response regulator hybrid protein 2659 76.26 0 2983279..2984091 - 270 148273837 - CMM_2653 - hypothetical protein 2660 74.75 0 2984215..2984622 + 135 148273838 - CMM_2654 - hypothetical protein 2661 68.85 0 2984687..2984869 + 60 148273839 - CMM_2655 - putative transcriptional regulator 2662 76.00 0 2984985..2986892 + 635 148273840 - CMM_2656 - putative amidase 2663 74.64 0 2986913..2988430 - 505 148273841 - CMM_2657 - putative phosphatase 2664 74.48 0 2988519..2989901 - 460 148273842 - CMM_2658 - putative penicillin-binding protein 2665 75.05 0 2989898..2990410 - 170 148273843 - CMM_2659 - MarR family transcriptional regulator 2666 77.25 +1 2990469..2991677 + 402 148273844 - CMM_2660 - putative monooxygenase 2667 74.51 0 2991847..2992254 + 135 148273845 - CMM_2661 - hypothetical protein 2668 74.75 0 2992321..2992926 - 201 148273846 - CMM_2662 - putative nitroreductase 2669 74.67 0 2993046..2994182 - 378 148273847 - CMM_2663 - putative oxidoreductase 2670 71.31 0 2994179..2994910 - 243 148273848 - CMM_2664 - hypothetical protein 2671 74.97 0 2995087..2995941 + 284 148273849 - CMM_2665 - hypothetical protein 2672 71.88 0 2995954..2997852 - 632 148273850 - CMM_2666 - putative multidrug ABC transporter, fused permease and ATP-binding protein 2673 76.00 0 2998206..2999030 + 274 148273851 - CMM_2667 - hypothetical protein 2674 64.16 -2 2999145..2999423 - 92 148273852 - CMM_2668 - hypothetical protein 2675 68.91 0 2999548..3000216 + 222 148273853 - CMM_2669 - putative two-component system response regulator 2676 68.20 -1 3000417..3001199 - 260 148273854 - CMM_2670 - putative cell filamentation protein 2677 68.60 -1 3001199..3001405 - 68 148273855 - CMM_2671 - hypothetical protein 2678 73.01 0 3001534..3002652 + 372 148273856 - CMM_2672 - antibiotic immunity protein peptidase family S66 protein 2679 74.21 0 3003259..3004305 + 348 148273857 - CMM_2673 - hypothetical protein 2680 76.12 0 3004315..3005382 - 355 148273858 - CMM_2674 - putative glycosyl transferase 2681 72.07 0 3005450..3006115 - 221 148273859 - CMM_2675 - hypothetical protein 2682 77.30 +1 3006326..3007294 + 322 148273860 blaC CMM_2676 - putative beta-lactamase 2683 78.37 +1 3007331..3007954 - 207 148273861 - CMM_2677 - TetR family transcriptional regulator 2684 79.03 +1 3008020..3008658 + 212 148273862 - CMM_2678 - putative acetyltransferase 2685 72.57 0 3008701..3008937 - 78 148273863 - CMM_2679 - hypothetical protein 2686 75.16 0 3008983..3009453 + 156 148273864 - CMM_2680 - MarR family transcriptional regulator 2687 73.88 0 3009517..3010362 + 281 148273865 - CMM_2681 - putative hydrolase 2688 74.78 0 3010356..3011033 + 225 148273866 - CMM_2682 - hypothetical protein 2689 77.84 +1 3011123..3012706 + 527 148273867 - CMM_2683 - putative bifunctional phosphatase/glycosyl transferase 2690 75.41 0 3012715..3013755 + 346 148273868 - CMM_2684 - putative glycosyl transferase 2691 77.33 +1 3013752..3015701 + 649 148273869 - CMM_2685 - putative bifunctional glycosyl transferase/isomerase 2692 77.56 +1 3015698..3017101 + 467 148273870 - CMM_2686 - putative bifunctional ADP-heptose synthase/transferase 2693 72.48 0 3017174..3017878 + 234 148273871 - CMM_2687 - putative short-chain dehydrogenase/oxidoreductase 2694 58.00 -2 3018382..3019062 - 226 148273872 - CMM_2688 - hypothetical protein 2695 72.75 0 3019687..3020064 - 125 148273873 - CMM_2689 - hypothetical protein 2696 73.53 0 3020157..3020768 - 203 148273874 - CMM_2690 - hypothetical protein 2697 74.35 0 3020952..3021953 + 333 148273875 - CMM_2691 - putative endoglucanase 2698 74.33 0 3022066..3023475 + 469 148273876 - CMM_2692 - putative endoglucanase 2699 75.80 0 3023600..3024913 + 437 148273877 - CMM_2693 - hypothetical protein 2700 62.52 -2 3025105..3026142 + 345 148273878 - CMM_2694 - hypothetical protein 2701 77.04 +1 3026264..3027400 - 378 148273879 - CMM_2695 - hypothetical protein 2702 71.89 0 3027486..3028577 - 363 148273880 - CMM_2696 - hypothetical protein 2703 66.35 -1 3028654..3029595 + 313 148273881 - CMM_2697 - putative sugar ABC transporter, permease component 2704 68.03 -1 3029598..3030548 + 316 148273882 - CMM_2698 - putative sugar ABC transporter, permease component 2705 68.36 -1 3030610..3031965 + 451 148273883 - CMM_2699 - putative sugar ABC transporter, substrate-binding protein 2706 72.78 0 3032047..3033846 + 599 148273884 bgaB CMM_2700 - putative beta-galactosidase 2707 76.98 +1 3033952..3035502 + 516 148273885 - CMM_2701 - hypothetical protein 2708 75.72 0 3035499..3037055 + 518 148273886 - CMM_2702 - putative bifunctional sugar kinase/nucleotidyltransferase 2709 68.23 -1 3037145..3037336 + 63 148273887 - CMM_2703 - hypothetical protein 2710 71.21 0 3037437..3037766 - 109 148273888 - CMM_2704 - hypothetical protein 72.78 MEAN 3.94 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0