IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
182	 76.44	0	244054..245394	-	446	148271360	-	CMM_0181	-	putative glycosyltransferase
183	 74.53	0	245483..245749	-	88	148271361	-	CMM_0182	-	hypothetical protein
184	 74.79	0	245857..247074	+	405	148271362	-	CMM_0183	-	hypothetical protein
185	 73.06	0	247071..248258	+	395	148271363	metE1	CMM_0184	-	hypothetical protein
186	 74.08	0	248261..249622	+	453	148271364	metC	CMM_0185	-	O-acetylhomoserine (thiol)-lyase
187	 74.69	0	249625..250932	+	435	148271365	-	CMM_0186	-	putative oxidoreductase/monooxygenase
188	 75.65	0	250962..251618	-	218	148271366	-	CMM_0187	-	TetR family transcriptional regulator
189	 71.35	0	251762..253300	+	512	148271367	-	CMM_0188	-	putative multi-drug efflux MFS permease
190	 76.26	0	253394..254248	+	284	148271368	-	CMM_0189	-	putative hydrolase
191	 75.90	0	254241..254825	+	194	148271369	-	CMM_0190	-	TetR family transcriptional regulator
192	 76.94	+1	254831..255229	+	132	148271370	-	CMM_0191	-	hypothetical protein
193	 73.23	0	255226..255621	-	131	148271371	-	CMM_0192	-	hypothetical protein
194	 73.20	0	255632..256381	-	249	148271372	-	CMM_0193	-	TetR family transcriptional regulator
195	 75.21	0	256493..257581	+	362	148271373	-	CMM_0194	-	putative oxidoreductase
196	 79.83	+1	257578..258390	+	270	148271374	-	CMM_0195	-	hypothetical protein
197	 67.57	-1	258445..259767	+	440	148271375	-	CMM_0196	-	putative sugar ABC transporter, binding protein
198	 67.68	-1	259819..260805	+	328	148271376	-	CMM_0197	-	putative sugar ABC transporter, permease component
199	 65.42	-1	260802..261683	+	293	148271377	-	CMM_0198	-	putative sugar ABC transporter, permease component
200	 68.41	-1	261760..262104	-	114	148271378	-	CMM_0199	-	hypothetical protein
201	 71.46	0	262107..262565	-	152	148271379	-	CMM_0200	-	hypothetical protein
202	 71.78	0	262610..264466	-	618	148271380	-	CMM_0201	-	glycoside hydrolase family protein
203	 75.34	0	264565..265752	-	395	148271381	-	CMM_0202	-	putative dehydrogenase/oxidoreductase
204	 73.30	0	265809..268430	-	873	148271382	-	CMM_0203	-	RND superfamily drug exporter
205	 75.13	0	268492..269082	+	196	148271383	-	CMM_0204	-	TetR family transcriptional regulator
206	 68.66	-1	269099..270904	-	601	148271384	-	CMM_0205	-	hypothetical protein
207	 71.68	0	271019..271876	-	285	148271385	-	CMM_0206	-	3-hydroxybutyryl-CoA dehydrogenase
208	 70.75	0	272021..272632	-	203	148271386	-	CMM_0207	-	hypothetical protein
209	 72.73	0	272795..273652	+	285	148271387	-	CMM_0208	-	putative membrane-associated phospholipid phosphatase
210	 65.42	-1	273681..273920	+	79	148271388	-	CMM_0209	-	hypothetical protein
211	 73.76	0	273960..274382	+	140	148271389	-	CMM_0210	-	hypothetical protein
212	 71.62	0	274410..275459	-	349	148271390	-	CMM_0211	-	putative monooxygenase
213	 67.31	-1	275539..275694	-	51	148271391	-	CMM_0212	-	hypothetical protein
214	 67.83	-1	275764..276108	+	114	148271392	-	CMM_0213	-	hypothetical protein
215	 74.46	0	276105..276335	-	76	148271393	-	CMM_0214	-	hypothetical protein
216	 73.96	0	276332..276907	-	191	148271394	-	CMM_0215	-	TetR family transcriptional regulator
217	 75.18	0	277004..278119	+	371	148271395	-	CMM_0216	-	putative Zn-dependant oxidoreductase
218	 71.14	0	278116..278919	-	267	148271396	-	CMM_0217	-	hypothetical protein
219	 72.32	0	278916..279569	-	217	148271397	-	CMM_0218	-	hypothetical protein
220	 75.67	0	279717..280016	+	99	148271398	-	CMM_0219	-	hypothetical protein
221	 74.02	0	280058..280642	+	194	148271399	-	CMM_0220	-	hypothetical protein
222	 71.11	0	280668..280982	-	104	148271400	-	CMM_0221	-	putative multidrug resistance membrane protein
223	 76.52	0	280982..281377	-	131	148271401	-	CMM_0222	-	putative multidrug resistance membrane protein
224	 75.76	0	281510..282169	-	219	148271402	-	CMM_0223	-	putative phosphatase
225	 77.61	+1	282255..283451	+	398	148271403	-	CMM_0224	-	putative glycosyl transferase
226	 75.19	0	283730..284890	+	386	148271404	-	CMM_0225	-	putative sarcosine oxidase
227	 77.43	+1	284921..285598	-	225	148271405	-	CMM_0226	-	hypothetical protein
228	 73.02	0	285732..286691	-	319	148271406	-	CMM_0227	-	putative acetyl xylan esterase
229	 73.70	0	286773..287369	-	198	148271407	-	CMM_0228	-	TetR family transcriptional regulator
230	 74.65	0	287456..289510	-	684	148271408	-	CMM_0229	-	putative acyl esterase
231	 75.49	0	289507..291240	-	577	148271409	-	CMM_0230	-	putative peptide ABC transporter, ATP-binding protein
232	 72.22	0	291237..292118	-	293	148271410	-	CMM_0231	-	putative peptide ABC transporter, permease component
233	 71.27	0	292115..293134	-	339	148271411	-	CMM_0232	-	putative peptide ABC transporter, permease component
234	 70.53	0	293131..294786	-	551	148271412	-	CMM_0233	-	putative peptide ABC transporter, substrate-binding protein
235	 71.40	0	294887..295393	-	168	148271413	-	CMM_0234	-	hypothetical protein
236	 72.00	0	295483..296382	-	299	148271414	-	CMM_0235	-	hypothetical protein
237	 71.49	0	296480..298468	-	662	148271415	-	CMM_0236	-	hypothetical protein
238	 73.17	0	298681..299049	-	122	148271416	-	CMM_0237	-	hypothetical protein
239	 74.02	0	299132..300355	-	407	148271417	-	CMM_0238	-	putative bicyclomycin efflux MFS permease
240	 69.82	0	300554..300775	+	73	148271418	-	CMM_0239	-	hypothetical protein
241	 72.32	0	300958..301788	+	276	148271419	-	CMM_0240	-	putative short-chain alcohol dehydrogenase
242	 70.70	0	301826..302098	-	90	148271420	-	CMM_0241	-	hypothetical protein
243	 76.40	0	302169..302795	-	208	148271421	ogtA	CMM_0242	-	6-O-methylguanine-DNA methyltransferase
244	 77.21	+1	302792..303322	-	176	148271422	sigY	CMM_0243	-	hypothetical protein
245	 76.29	0	303648..304385	+	245	148271423	-	CMM_0244	-	putative two-component system response regulator
246	 76.36	0	304664..305953	+	429	148271424	-	CMM_0245	-	hypothetical protein
247	 53.90	-2	306397..310155	+	1252	148271425	-	CMM_0246	-	hypothetical protein
248	 73.91	0	310377..311591	+	404	148271426	-	CMM_0247	-	putative oxidoreductase/dehydrogenase
249	 79.92	+1	311642..312358	+	238	148271427	-	CMM_0248	-	hypothetical protein
250	 77.68	+1	312537..313244	+	235	148271428	-	CMM_0249	-	hypothetical protein
251	 75.35	0	313241..314725	+	494	148271429	-	CMM_0250	-	hypothetical protein
252	 74.56	0	314775..315788	-	337	148271430	-	CMM_0251	-	LacI family transcriptional regulator
253	 70.95	0	315851..316573	-	240	148271431	-	CMM_0252	-	hypothetical protein
254	 78.17	+1	316624..317823	-	399	148271432	-	CMM_0253	-	hypothetical protein
255	 73.02	0	317976..318227	-	83	148271433	-	CMM_0254	-	hypothetical protein
256	 72.52	0	318363..319832	+	489	148271434	-	CMM_0255	-	putative MFS permease
257	 76.10	0	320052..320687	-	211	148271435	-	CMM_0256	-	hypothetical protein
258	 73.92	0	320698..321345	-	215	148271436	-	CMM_0257	-	MerR family transcriptional regulator
259	 74.24	0	321541..322134	-	197	148271437	-	CMM_0258	-	hypothetical protein
260	 77.14	+1	322313..322837	+	174	148271438	crcB1	CMM_0259	-	putative membrane protein involved in chromosome condensation
261	 76.38	0	322834..323214	+	126	148271439	crcB2	CMM_0260	-	putative membrane protein involved in chromosome condensation
262	 78.20	+1	323211..323687	+	158	148271440	-	CMM_0261	-	putative acetyltransferase
263	 76.19	0	323697..324284	+	195	148271441	-	CMM_0262	-	putative NTP pyrophosphohydrolases
264	 76.49	0	324294..325301	-	335	148271442	ddlA	CMM_0263	-	putative D-alanine--D-alanine ligase
265	 77.22	+1	325348..326058	-	236	148271443	-	CMM_0264	-	hypothetical protein
266	 70.99	0	326061..326615	-	184	148271444	-	CMM_0265	-	hypothetical protein
267	 71.21	0	326881..328224	+	447	148271445	-	CMM_0266	-	hypothetical protein
268	 74.71	0	328221..329078	+	285	148271446	-	CMM_0267	-	RpiR family transcriptional regulator
269	 77.25	+1	329139..330083	+	314	148271447	-	CMM_0268	-	putative hydroxyacid dehydrogenase
270	 75.27	0	330080..331660	+	526	148271448	-	CMM_0269	-	putative aldehyde dehydrogenase
271	 70.22	0	331874..333112	+	412	148271449	-	CMM_0270	-	putative sugar ABC transporter, substrate binding protein
272	 68.79	-1	333112..334101	+	329	148271450	-	CMM_0271	-	putative sugar ABC transporter, permease component
273	 69.63	0	334094..334969	+	291	148271451	-	CMM_0272	-	putative sugar ABC transporter, permease component
274	 70.17	0	335052..335822	+	256	148271452	-	CMM_0273	-	trehalose utilization-related protein
275	 75.85	0	335819..337048	+	409	148271453	-	CMM_0274	-	putative dehydrogenase
276	 77.40	+1	337069..338382	+	437	148271454	-	CMM_0275	-	ROK family transcriptional regulator
277	 74.12	0	338379..339035	+	218	148271455	-	CMM_0276	-	hypothetical protein
278	 76.95	+1	339073..340074	-	333	148271456	-	CMM_0277	-	hypothetical protein
279	 76.65	0	340257..340847	+	196	148271457	-	CMM_0278	-	putative chorismate mutase
280	 75.22	0	340959..341297	-	112	148271458	-	CMM_0279	-	hypothetical protein
281	 73.78	0	341356..341847	-	163	148271459	-	CMM_0280	-	hypothetical protein
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.