IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2082	 76.41	0	2344422..2345273	+	283	148273260	-	CMM_2078	-	hypothetical protein
2083	 70.15	0	2345295..2346041	-	248	148273261	-	CMM_2079	-	glycosyl transferase family protein
2084	 68.58	-1	2346231..2346752	+	173	148273262	-	CMM_2080	-	hypothetical protein
2085	 69.80	0	2346772..2348049	-	425	148273263	-	CMM_2081	-	Mn2+/Fe2+ transporter
2086	 69.99	0	2348147..2349622	-	491	148273264	-	CMM_2082	-	MFS family xanthine/uracil permease
2087	 71.43	0	2349748..2349999	-	83	148273265	-	CMM_2083	-	hypothetical protein
2088	 71.40	0	2349996..2351177	-	393	148273266	pitB	CMM_2084	-	low-affinity inorganic phosphate permease
2089	 73.77	0	2351296..2352957	-	553	148273267	lipT	CMM_2085	-	carboxylesterase
2090	 77.40	+1	2352954..2354537	-	527	148273268	-	CMM_2086	-	hypothetical protein
2091	 73.48	0	2354629..2355816	+	395	148273269	-	CMM_2087	-	hypothetical protein
2092	 72.16	0	2355761..2356780	-	339	148273270	-	CMM_2088	-	putative oxidoreductase
2093	 75.90	0	2356917..2357858	-	313	148273271	-	CMM_2089	-	putative NAD-dependent epimerase/dehydratase
2094	 76.05	0	2359330..2360022	-	230	148273272	-	CMM_2090	-	putative short chain dehydrogenase/oxidoreductase
2095	 74.07	0	2360157..2360507	+	116	148273273	-	CMM_2091	-	hypothetical protein
2096	 72.33	0	2360643..2361101	+	152	148273274	hsp20	CMM_2092	-	HSP20 family protein
2097	 74.45	0	2361212..2363728	-	838	148273275	alcBC	CMM_2093	-	putative siderophore biosynthesis protein
2098	 73.16	0	2363725..2365095	-	456	148273276	alcA	CMM_2094	-	putative siderophore biosynthesis enzyme/monooxygenase
2099	 74.61	0	2365092..2366702	-	536	148273277	-	CMM_2095	-	L-amino acid decarboxylase
2100	 76.60	0	2366913..2367224	+	103	148273278	-	CMM_2095A	-	hypothetical protein
2101	 77.12	+1	2367226..2367378	+	50	148273279	-	CMM_2095B	-	hypothetical protein
2102	 68.77	-1	2367480..2367764	+	94	148273280	-	CMM_2096	-	hypothetical protein
2103	 73.81	0	2367761..2368054	+	97	148273281	-	CMM_2097	-	hypothetical protein
2104	 70.01	0	2368102..2368998	+	298	148273282	-	CMM_2098	-	putative short chain dehydrogenase/oxidoreductase
2105	 78.83	+1	2369127..2369858	+	243	148273283	-	CMM_2099	-	hypothetical protein
2106	 70.63	0	2370010..2370741	-	243	148273284	-	CMM_2100	-	hypothetical protein
2107	 71.68	0	2371085..2371822	-	245	148273285	-	CMM_2101	-	hypothetical protein
2108	 74.72	0	2372140..2373021	+	293	148273286	-	CMM_2102	-	2Fe-2S domain-containing protein
2109	 71.46	0	2373103..2374563	-	486	148273287	-	CMM_2103	-	hypothetical protein
2110	 74.44	0	2374595..2375083	-	162	148273288	-	CMM_2104	-	hypothetical protein
2111	 72.03	0	2375265..2375525	+	86	148273289	-	CMM_2105	-	hypothetical protein
2112	 69.25	0	2375647..2376999	+	450	148273290	-	CMM_2106	-	putative sugar ABC transporter, binding protein
2113	 67.94	-1	2376996..2378012	+	338	148273291	-	CMM_2107	-	putative sugar ABC transporter, permease component
2114	 67.08	-1	2378009..2378977	+	322	148273292	-	CMM_2108	-	putative sugar ABC transporter, permease component
2115	 72.66	0	2379114..2382167	+	1017	148273293	lacZ	CMM_2109	-	beta-galactosidase
2116	 71.56	0	2382278..2383564	+	428	148273294	-	CMM_2110	-	putative sugar alcohol dehydrogenase
2117	 69.63	0	2383679..2383948	+	89	148273295	-	CMM_2111	-	putative glutaredoxin
2118	 72.99	0	2383952..2385421	+	489	148273296	-	CMM_2112	-	putative phosphotransferase
2119	 63.11	-2	2385893..2386117	+	74	148273297	-	CMM_2113	-	hypothetical protein
2120	 71.19	0	2386220..2388385	+	721	148273298	ptrB	CMM_2114	-	putative protease II (oligopeptidase B)
2121	 76.57	0	2388531..2389358	+	275	148273299	thiM	CMM_2115	-	hypothetical protein
2122	 76.88	+1	2389355..2391586	+	743	148273300	thiED	CMM_2116	-	multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase
2123	 74.07	0	2391766..2392656	+	296	148273301	-	CMM_2117	-	putative fusion protein
2124	 75.46	0	2392771..2394168	+	465	148273302	-	CMM_2118	-	putative sugar MFS permease
2125	 73.33	0	2394451..2394660	+	69	148273303	-	CMM_2119	-	hypothetical protein
2126	 71.86	0	2394728..2396863	-	711	148273304	-	CMM_2120	-	putative DNA helicase
2127	 72.15	0	2397158..2398306	+	382	148273305	-	CMM_2121	-	putative glutathione S-transferase
2128	 78.24	+1	2398306..2399100	+	264	148273306	-	CMM_2122	-	putative esterase
2129	 72.27	0	2399063..2399437	-	124	148273307	-	CMM_2123	-	hypothetical protein
2130	 75.05	0	2399572..2400084	+	170	148273308	-	CMM_2124	-	hypothetical protein
2131	 75.12	0	2400081..2400482	+	133	148273309	-	CMM_2125	-	hypothetical protein
2132	 74.26	0	2400540..2401580	+	346	148273310	-	CMM_2126	-	putative Zn-dependant alcohol dehydrogenase
2133	 73.27	0	2401596..2401913	-	105	148273311	-	CMM_2127	-	hypothetical protein
2134	 71.57	0	2401961..2403715	-	584	148273312	poxB	CMM_2128	-	pyruvate dehydrogenase
2135	 73.50	0	2403823..2404554	+	243	148273313	-	CMM_2129	-	hypothetical protein
2136	 77.26	+1	2404551..2405513	-	320	148273314	-	CMM_2130	-	putative Zn-dependant oxidoreductase
2137	 77.09	+1	2405657..2406577	+	306	148273315	-	CMM_2131	-	LysR family transcriptional regulator
2138	 76.67	0	2408857..2409756	+	299	148273316	-	CMM_2132	-	TetR family transcriptional regulator
2139	 77.31	+1	2409753..2410391	-	212	148273317	-	CMM_2133	-	putative lipase/esterase
2140	 76.89	+1	2410435..2410884	-	149	148273318	-	CMM_2134	-	hypothetical protein
2141	 73.02	0	2410881..2412407	-	508	148273319	-	CMM_2135	-	hypothetical protein
2142	 74.67	0	2412481..2413242	-	253	148273320	-	CMM_2136	-	hypothetical protein
2143	 75.61	0	2413422..2414360	+	312	148273321	-	CMM_2137	-	putative sugarkinase
2144	 73.41	0	2414413..2416014	-	533	148273322	-	CMM_2138	-	hypothetical protein
2145	 73.46	0	2416143..2417408	-	421	148273323	cynX	CMM_2139	-	MFS family permease
2146	 76.27	0	2417443..2418129	+	228	148273324	-	CMM_2140	-	hypothetical protein
2147	 74.81	0	2418126..2419058	-	310	148273325	ribF	CMM_2141	-	bifunctional riboflavin kinase/FMN adenylyltransferase
2148	 72.08	0	2419061..2419522	-	153	148273326	-	CMM_2142	-	hypothetical protein
2149	 69.38	0	2419560..2419928	-	122	148273327	-	CMM_2143	-	hypothetical protein
2150	 75.10	0	2419925..2420884	-	319	148273328	truB	CMM_2144	-	tRNA pseudouridine synthase B
2151	 76.20	0	2420971..2421966	+	331	148273329	apbA	CMM_2145	-	2-dehydropantoate 2-reductase
2152	 76.01	0	2422016..2422582	-	188	148273330	-	CMM_2146	-	hypothetical protein
2153	 76.91	+1	2422621..2423499	+	292	148273331	mutY	CMM_2147	-	A/G-specific adenine glycosylase
2154	 70.46	0	2423544..2424044	-	166	148273332	rbfA	CMM_2148	-	ribosome-binding factor A
2155	 72.56	0	2424224..2427058	-	944	148273333	infB	CMM_2149	-	translation initiation factor IF-2
2156	 71.43	0	2427155..2427448	-	97	148273334	-	CMM_2150	-	putative nucleic-acid-binding protein
2157	 70.34	0	2427499..2428506	-	335	148273335	nusA	CMM_2151	-	transcription elongation factor NusA
2158	 71.91	0	2428593..2430365	-	590	148273336	proS	CMM_2152	-	prolyl-tRNA synthetase
2159	 77.94	+1	2430397..2431398	-	333	148273337	-	CMM_2153	-	putative NAD(P)H steroid dehydrogenase/isomerase
2160	 78.53	+1	2431395..2434067	-	890	148273338	-	CMM_2154	-	putative acyl-CoA synthetase
2161	 70.74	0	2434075..2435106	-	343	148273339	-	CMM_2155	-	3-oxoacyl-(acyl carrier protein) synthase III
2162	 68.76	-1	2435214..2436359	-	381	148273340	ispG	CMM_2156	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2163	 72.45	0	2436450..2437868	-	472	148273341	-	CMM_2157	-	M50 family zinc metalloprotease
2164	 75.54	0	2438004..2439254	+	416	148273342	pknF	CMM_2158	-	putative serine/threonine protein kinase
2165	 77.94	+1	2439251..2439862	+	203	148273343	-	CMM_2159	-	hypothetical protein
2166	 73.04	0	2439980..2441062	-	360	148273344	dxrA	CMM_2160	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2167	 72.63	0	2441071..2442093	-	340	148273345	-	CMM_2161	-	putative peptidylprolyl isomerase
2168	 72.63	0	2442228..2442713	-	161	148273346	-	CMM_2162	-	hypothetical protein
2169	 72.81	0	2442785..2444200	+	471	148273347	gabT	CMM_2163	-	putative 4-aminobutyrate aminotransferase
2170	 74.38	0	2444200..2445210	+	336	148273348	-	CMM_2164	-	putative asparaginase II
2171	 79.78	+1	2445200..2448691	-	1163	148273349	-	CMM_2165	-	hypothetical protein
2172	 79.32	+1	2448782..2451325	-	847	148273350	-	CMM_2166	-	hypothetical protein
2173	 78.30	+1	2451322..2452782	-	486	148273351	-	CMM_2167	-	hypothetical protein
2174	 74.23	0	2452779..2453822	-	347	148273352	-	CMM_2168	-	MoxR-like ATPase, putative regulator
2175	 76.82	+1	2453881..2459895	-	2004	148273353	-	CMM_2169	-	putative RTX toxin
2176	 76.97	+1	2459892..2461463	-	523	148273354	pknG	CMM_2170	-	hypothetical protein
2177	 68.85	0	2461621..2462946	-	441	148273355	gltA	CMM_2171	-	type II citrate synthase
2178	 76.10	0	2463108..2464241	-	377	148273356	-	CMM_2172	-	N-succinyldiaminopimelate aminotransferase
2179	 67.91	-1	2464238..2464558	-	106	148273357	fdxB	CMM_2173	-	hypothetical protein
2180	 76.64	0	2464599..2465891	-	430	148273358	-	CMM_2174	-	hypothetical protein
2181	 74.78	0	2466135..2467046	+	303	148273359	-	CMM_2175	-	OFeT family Fe2+ permease
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.