IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1996	 77.24	+1	2256413..2257027	-	204	148273174	-	CMM_1993	-	3-methyladenine DNA glycosylase
1997	 72.46	0	2257035..2257172	-	45	148273175	-	CMM_1994	-	hypothetical protein
1998	 73.96	0	2257169..2258662	-	497	148273176	argH	CMM_1995	-	argininosuccinate lyase
1999	 70.30	0	2258667..2259905	-	412	148273177	argG	CMM_1996	-	argininosuccinate synthase
2000	 72.19	0	2259954..2260877	-	307	148273178	argF	CMM_1997	-	ornithine carbamoyltransferase
2001	 74.47	0	2261027..2262244	-	405	148273179	argD	CMM_1998	-	acetylornithine aminotransferase
2002	 72.15	0	2262241..2263152	-	303	148273180	argB	CMM_1999	-	acetylglutamate kinase
2003	 72.81	0	2263176..2264330	-	384	148273181	argJ	CMM_2000	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2004	 74.10	0	2264327..2265376	-	349	148273182	argC	CMM_2001	-	N-acetyl-gamma-glutamyl-phosphate reductase
2005	 75.86	0	2265506..2268049	-	847	148273183	pheT	CMM_2002	-	hypothetical protein
2006	 71.97	0	2268052..2269089	-	345	148273184	pheS	CMM_2003	-	phenylalanyl-tRNA synthetase subunit alpha
2007	 69.70	0	2269218..2270042	-	274	148273185	gluD	CMM_2004	-	putative glutamate ABC transpoter, permease component
2008	 66.82	-1	2270039..2270686	-	215	148273186	gluC	CMM_2005	-	putative glutamate ABC transpoter, permease component
2009	 69.05	0	2270804..2271727	-	307	148273187	gluB	CMM_2006	-	putative glutamate ABC transporter, substrate-binding protein
2010	 68.44	-1	2271882..2272670	-	262	148273188	gluA	CMM_2007	-	putative glutamate ABC transporter, ATP-binding protein
2011	 73.28	0	2272822..2273622	-	266	148273189	-	CMM_2008	-	putaive rRNA methyltransferase
2012	 71.25	0	2273685..2274077	-	130	148273190	rplT	CMM_2009	-	50S ribosomal protein L20
2013	 63.08	-2	2274124..2274318	-	64	148273191	rpmI	CMM_2010	-	50S ribosomal protein L35
2014	 63.33	-2	2274311..2274730	-	139	148273192	infC	CMM_2011	-	translation initiation factor IF-3
2015	 75.10	0	2275284..2275769	+	161	148273193	-	CMM_2012	-	hypothetical protein
2016	 75.65	0	2275809..2276576	-	255	148273194	-	CMM_2013	-	hypothetical protein
2017	 73.73	0	2276573..2277322	-	249	148273195	hisA	CMM_2014	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2018	 74.45	0	2277386..2278027	-	213	148273196	hisH	CMM_2015	-	imidazole glycerol phosphate synthase subunit HisH
2019	 69.62	0	2278024..2278632	-	202	148273197	hisB	CMM_2016	-	imidazoleglycerol-phosphate dehydratase
2020	 74.94	0	2278745..2279143	-	132	148273198	-	CMM_2017	-	hypothetical protein
2021	 70.78	0	2279505..2280185	+	226	148273199	lexA	CMM_2018	-	SOS repressor protein
2022	 71.97	0	2280270..2281835	-	521	148273200	hflX	CMM_2019	-	putative GTP-binding protein
2023	 73.21	0	2281876..2282502	+	208	148273201	-	CMM_2020	-	hypothetical protein
2024	 73.38	0	2282551..2283429	-	292	148273202	dapF	CMM_2021	-	diaminopimelate epimerase
2025	 74.68	0	2283439..2284362	-	307	148273203	miaA	CMM_2022	-	hypothetical protein
2026	 72.09	0	2284359..2285945	-	528	148273204	miaB	CMM_2023	-	putative methylthioadenine synthetase
2027	 72.95	0	2285996..2286568	-	190	148273205	recX	CMM_2024	-	hypothetical protein
2028	 68.69	-1	2287165..2288253	-	362	148273206	recA	CMM_2025	-	recombinase A
2029	 76.07	0	2288536..2288769	-	77	148273207	-	CMM_2026	-	hypothetical protein
2030	 68.93	0	2288846..2289154	-	102	148273208	-	CMM_2027	-	Cro/CI family transcriptional regulator
2031	 74.67	0	2289294..2289818	-	174	148273209	-	CMM_2028	-	hypothetical protein
2032	 72.57	0	2289815..2290441	-	208	148273210	pgsA	CMM_2029	-	hypothetical protein
2033	 72.30	0	2290445..2293300	-	951	148273211	ftsK	CMM_2030	-	cell division protein
2034	 72.91	0	2293369..2294601	-	410	148273212	-	CMM_2031	-	putative ABC transporter, permease component
2035	 72.74	0	2294598..2295305	-	235	148273213	-	CMM_2032	-	putative ABC transporter, ATPase component
2036	 74.46	0	2295302..2296327	-	341	148273214	-	CMM_2033	-	hypothetical protein
2037	 68.63	-1	2296540..2298216	-	558	148273215	-	CMM_2034	-	metallo-beta-lactamase family hydrolase
2038	 71.08	0	2298275..2299249	-	324	148273216	dapA	CMM_2035	-	putative dihydrodipicolinate synthase
2039	 74.56	0	2299389..2300642	+	417	148273217	-	CMM_2036	-	hypothetical protein
2040	 68.06	-1	2300672..2301463	-	263	148273218	thyX	CMM_2037	-	FAD-dependent thymidylate synthase
2041	 75.14	0	2301571..2302491	+	306	148273219	-	CMM_2038	-	putative nucleoside-diphosphate sugar epimerase
2042	 74.89	0	2302512..2302961	-	149	148273220	-	CMM_2039	-	hypothetical protein
2043	 72.78	0	2302961..2303794	-	277	148273221	dapB	CMM_2040	-	hypothetical protein
2044	 69.98	0	2303854..2304456	-	200	148273222	gmpB	CMM_2041	-	hypothetical protein
2045	 72.49	0	2304465..2305820	-	451	148273223	pepR	CMM_2042	-	M16 family metallopeptidase
2046	 69.86	0	2305884..2306792	-	302	148273224	-	CMM_2043	-	hypothetical protein
2047	 73.98	0	2307500..2308606	-	368	148273225	-	CMM_2044	-	putative oxidoreductase
2048	 74.76	0	2309060..2309590	+	176	148273226	-	CMM_2045	-	hypothetical protein
2049	 78.04	+1	2309613..2309999	+	128	148273227	-	CMM_2046	-	hypothetical protein
2050	 69.70	0	2310069..2312342	-	757	148273228	pnpA	CMM_2047	-	polynucleotide phosphorylase/polyadenylase
2051	 66.67	-1	2312820..2313089	-	89	148273229	rpsO	CMM_2048	-	30S ribosomal protein S15
2052	 72.20	0	2313325..2314626	+	433	148273230	-	CMM_2049	-	putative MFS permease
2053	 76.23	0	2314653..2315384	+	243	148273231	-	CMM_2050	-	hypothetical protein
2054	 73.46	0	2315628..2317202	-	524	148273232	-	CMM_2051	-	2-oxoglutarate/malate translocator
2055	 74.44	0	2317307..2319583	-	758	148273233	-	CMM_2052	-	putative ATP-dependent DNA helicase
2056	 73.42	0	2319688..2320176	-	162	148273234	-	CMM_2053	-	hypothetical protein
2057	 71.83	0	2320419..2321678	+	419	148273235	metE2	CMM_2054	-	5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
2058	 76.70	0	2321683..2322210	-	175	148273236	aptA	CMM_2055	-	adenine phosphoribosyltransferase
2059	 77.19	+1	2322317..2323048	+	243	148273237	-	CMM_2056	-	hypothetical protein
2060	 71.34	0	2323130..2323963	-	277	148273238	-	CMM_2057	-	putative 2,5-diketo-D-gluconic acid reductase
2061	 73.82	0	2323986..2324600	-	204	148273239	lspA	CMM_2058	-	putative lipoprotein signal peptidase
2062	 76.89	+1	2324610..2325137	-	175	148273240	-	CMM_2059	-	hypothetical protein
2063	 70.02	0	2325185..2325751	-	188	148273241	-	CMM_2060	-	cysteine peptidase family protein C56
2064	 72.13	0	2325834..2326712	-	292	148273242	-	CMM_2061	-	hypothetical protein
2065	 68.81	-1	2326956..2327516	+	186	148273243	dpsB	CMM_2062	-	putative DNA-binding ferritin-like protein
2066	 69.55	0	2327638..2328435	+	265	148273244	-	CMM_2063	-	short chain dehydrogenase/oxidoreductase
2067	 64.76	-2	2328435..2328644	+	69	148273245	-	CMM_2064	-	hypothetical protein
2068	 76.36	0	2328724..2329971	+	415	148273246	-	CMM_2065	-	putative two-component system sensor kinase
2069	 74.51	0	2329968..2330630	+	220	148273247	-	CMM_2066	-	putative two-component system response regulator
2070	 77.92	+1	2330668..2332107	-	479	148273248	dacB	CMM_2067	-	D-alanyl-D-alanine carboxypeptidase
2071	 76.62	0	2332162..2332794	-	210	148273249	-	CMM_2068	-	putative DNA-invertase/recombinase
2072	 69.89	0	2332896..2333174	-	92	148273250	-	CMM_2069	-	hypothetical protein
2073	 74.30	0	2333276..2334481	-	401	148273251	-	CMM_2070	-	hypothetical protein
2074	 75.84	0	2334589..2336016	-	475	148273252	-	CMM_2071	-	putative FAD/FMN-containing dehydrogenase
2075	 77.78	+1	2336075..2337010	+	311	148273253	-	CMM_2072	-	putative DNA glycosylase
2076	 69.62	0	2337014..2338063	-	349	148273254	-	CMM_2073	-	hypothetical protein
2077	 74.87	0	2338121..2340619	+	832	148273255	-	CMM_2074	-	ATP-dependent DNA ligase
2078	 70.88	0	2340710..2341588	+	292	148273256	-	CMM_2075	-	putative hydrolase
2079	 70.29	0	2341631..2341768	+	45	148273257	-	CMM_2075A	-	hypothetical protein
2080	 77.01	+1	2341812..2342720	+	302	148273258	-	CMM_2076	-	hypothetical protein
2081	 69.96	0	2342798..2344315	-	505	148273259	aspA	CMM_2077	-	aspartate ammonia-lyase
2082	 76.41	0	2344422..2345273	+	283	148273260	-	CMM_2078	-	hypothetical protein
2083	 70.15	0	2345295..2346041	-	248	148273261	-	CMM_2079	-	glycosyl transferase family protein
2084	 68.58	-1	2346231..2346752	+	173	148273262	-	CMM_2080	-	hypothetical protein
2085	 69.80	0	2346772..2348049	-	425	148273263	-	CMM_2081	-	Mn2+/Fe2+ transporter
2086	 69.99	0	2348147..2349622	-	491	148273264	-	CMM_2082	-	MFS family xanthine/uracil permease
2087	 71.43	0	2349748..2349999	-	83	148273265	-	CMM_2083	-	hypothetical protein
2088	 71.40	0	2349996..2351177	-	393	148273266	pitB	CMM_2084	-	low-affinity inorganic phosphate permease
2089	 73.77	0	2351296..2352957	-	553	148273267	lipT	CMM_2085	-	carboxylesterase
2090	 77.40	+1	2352954..2354537	-	527	148273268	-	CMM_2086	-	hypothetical protein
2091	 73.48	0	2354629..2355816	+	395	148273269	-	CMM_2087	-	hypothetical protein
2092	 72.16	0	2355761..2356780	-	339	148273270	-	CMM_2088	-	putative oxidoreductase
2093	 75.90	0	2356917..2357858	-	313	148273271	-	CMM_2089	-	putative NAD-dependent epimerase/dehydratase
2094	 76.05	0	2359330..2360022	-	230	148273272	-	CMM_2090	-	putative short chain dehydrogenase/oxidoreductase
2095	 74.07	0	2360157..2360507	+	116	148273273	-	CMM_2091	-	hypothetical protein
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.