IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
135	 53.64	-2	193999..194973	-	324	148271313	-	CMM_0135	-	hypothetical protein
136	 51.16	-2	194970..196007	-	345	148271314	-	CMM_0136	-	hypothetical protein
137	 71.92	0	196333..197721	-	462	148271315	-	CMM_0137	-	putative MFS transporter
138	 72.96	0	197794..198540	+	248	148271316	-	CMM_0138	-	hypothetical protein
139	 74.22	0	198545..198928	-	127	148271317	-	CMM_0139	-	hypothetical protein
140	 73.94	0	198943..199437	-	164	148271318	-	CMM_0140	-	hypothetical protein
141	 70.87	0	199666..200331	+	221	148271319	-	CMM_0141	-	putative secreted protein
142	 73.50	0	200413..201393	+	326	148271320	-	CMM_0142	-	hypothetical protein
143	 70.58	0	201390..202232	+	280	148271321	-	CMM_0143	-	hypothetical protein
144	 73.37	0	202285..203268	-	327	148271322	-	CMM_0144	-	hypothetical protein
145	 69.55	0	203637..204329	-	230	148271323	-	CMM_0145	-	hypothetical protein
146	 78.91	+1	204455..205099	-	214	148271324	-	CMM_0146	-	putative peptidase
147	 75.99	0	205099..205731	-	210	148271325	-	CMM_0147	-	hypothetical protein
148	 78.15	+1	205728..206537	-	269	148271326	-	CMM_0148	-	hypothetical protein
149	 71.67	0	206653..207351	-	232	148271327	-	CMM_0149	-	hypothetical protein
150	 74.95	0	207498..210902	-	1134	148271328	-	CMM_0150	-	putative cell wall surface anchor family protein
151	 67.90	-1	211308..213179	+	623	148271329	dnaK	CMM_0151	-	molecular chaperone DnaK
152	 71.87	0	213176..213829	+	217	148271330	grpE	CMM_0152	-	heat shock chaperone
153	 73.27	0	213950..214963	+	337	148271331	dnaJ1	CMM_0153	-	chaperone, curved DNA-binding protein
154	 76.58	0	214965..215438	+	157	148271332	hspR	CMM_0154	-	heat shock transcriptional regulator
155	 76.63	0	215435..216658	+	407	148271333	-	CMM_0155	-	putative methyltransferase
156	 76.19	0	216711..217151	+	146	148271334	-	CMM_0156	-	hypothetical protein
157	 71.73	0	217183..217419	-	78	148271335	-	CMM_0157	-	Cro/CI family transcriptional regulator
158	 75.12	0	217419..218057	-	212	148271336	-	CMM_0158	-	hypothetical protein
159	 71.14	0	218138..218584	-	148	148271337	-	CMM_0159	-	hypothetical protein
160	 73.80	0	218974..219702	-	242	148271338	-	CMM_0160	-	hypothetical protein
161	 76.00	0	219867..220895	-	342	148271339	-	CMM_0161	-	LacI family transcriptional regulator
162	 73.56	0	221482..222105	-	207	148271340	-	CMM_0162	-	hypothetical protein
163	 77.75	+1	222222..223250	+	342	148271341	-	CMM_0163	-	hypothetical protein
164	 77.82	+1	223454..224224	+	256	148271342	-	CMM_0164	-	hypothetical protein
165	 75.64	0	224275..225177	+	300	148271343	fhuC	CMM_0165	-	putative Fe3+-siderophore ABC transporter,ATPase component
166	 71.62	0	225174..226163	+	329	148271344	fhuD	CMM_0166	-	putative Fe3+-siderophore ABC transporter,binding protein
167	 77.93	+1	226198..228354	+	718	148271345	fhuB	CMM_0167	-	iron-hydroxamate transporter permease subunit
168	 63.17	-2	228475..228960	+	161	148271346	-	CMM_0167a	-	hypothetical protein
169	 75.00	0	229937..231484	+	515	148271347	-	CMM_0168	-	putative two-component system sensor kinase
170	 73.76	0	231511..232173	+	220	148271348	-	CMM_0169	-	putative two-component system response regulator
171	 69.63	0	232240..232644	+	134	148271349	-	CMM_0170	-	putative tautomerase
172	 77.58	+1	232668..233180	-	170	148271350	-	CMM_0171	-	putative acetyltransferase
173	 69.62	0	233252..234946	-	564	148271351	-	CMM_0172	-	hypothetical protein
174	 70.25	0	235445..236977	+	510	148271352	sulP	CMM_0173	-	putative sulfate MFS permease
175	 77.17	+1	237042..237698	-	218	148271353	mntA	CMM_0174	-	putative Mn2+/Zn2+ ABC-type transporter, ATPase component
176	 76.32	0	237755..238624	+	289	148271354	mntB	CMM_0175	-	putative Mn2+/Zn2+ ABC-type transporter,permease component
177	 74.45	0	238675..239907	+	410	148271355	-	CMM_0176	-	hypothetical protein
178	 73.57	0	239904..240830	+	308	148271356	mntC	CMM_0177	-	putative Mn2+/Zn2+ ABC-type transporter,substrate binding protein
179	 72.28	0	240866..242077	+	403	148271357	-	CMM_0178	-	hypothetical protein
180	 72.68	0	242217..243596	+	459	148271358	-	CMM_0179	-	NAD-dependent aldehyde dehydrogenase
181	 74.71	0	243680..244027	+	115	148271359	-	CMM_0180	-	hypothetical protein
182	 76.44	0	244054..245394	-	446	148271360	-	CMM_0181	-	putative glycosyltransferase
183	 74.53	0	245483..245749	-	88	148271361	-	CMM_0182	-	hypothetical protein
184	 74.79	0	245857..247074	+	405	148271362	-	CMM_0183	-	hypothetical protein
185	 73.06	0	247071..248258	+	395	148271363	metE1	CMM_0184	-	hypothetical protein
186	 74.08	0	248261..249622	+	453	148271364	metC	CMM_0185	-	O-acetylhomoserine (thiol)-lyase
187	 74.69	0	249625..250932	+	435	148271365	-	CMM_0186	-	putative oxidoreductase/monooxygenase
188	 75.65	0	250962..251618	-	218	148271366	-	CMM_0187	-	TetR family transcriptional regulator
189	 71.35	0	251762..253300	+	512	148271367	-	CMM_0188	-	putative multi-drug efflux MFS permease
190	 76.26	0	253394..254248	+	284	148271368	-	CMM_0189	-	putative hydrolase
191	 75.90	0	254241..254825	+	194	148271369	-	CMM_0190	-	TetR family transcriptional regulator
192	 76.94	+1	254831..255229	+	132	148271370	-	CMM_0191	-	hypothetical protein
193	 73.23	0	255226..255621	-	131	148271371	-	CMM_0192	-	hypothetical protein
194	 73.20	0	255632..256381	-	249	148271372	-	CMM_0193	-	TetR family transcriptional regulator
195	 75.21	0	256493..257581	+	362	148271373	-	CMM_0194	-	putative oxidoreductase
196	 79.83	+1	257578..258390	+	270	148271374	-	CMM_0195	-	hypothetical protein
197	 67.57	-1	258445..259767	+	440	148271375	-	CMM_0196	-	putative sugar ABC transporter, binding protein
198	 67.68	-1	259819..260805	+	328	148271376	-	CMM_0197	-	putative sugar ABC transporter, permease component
199	 65.42	-1	260802..261683	+	293	148271377	-	CMM_0198	-	putative sugar ABC transporter, permease component
200	 68.41	-1	261760..262104	-	114	148271378	-	CMM_0199	-	hypothetical protein
201	 71.46	0	262107..262565	-	152	148271379	-	CMM_0200	-	hypothetical protein
202	 71.78	0	262610..264466	-	618	148271380	-	CMM_0201	-	glycoside hydrolase family protein
203	 75.34	0	264565..265752	-	395	148271381	-	CMM_0202	-	putative dehydrogenase/oxidoreductase
204	 73.30	0	265809..268430	-	873	148271382	-	CMM_0203	-	RND superfamily drug exporter
205	 75.13	0	268492..269082	+	196	148271383	-	CMM_0204	-	TetR family transcriptional regulator
206	 68.66	-1	269099..270904	-	601	148271384	-	CMM_0205	-	hypothetical protein
207	 71.68	0	271019..271876	-	285	148271385	-	CMM_0206	-	3-hydroxybutyryl-CoA dehydrogenase
208	 70.75	0	272021..272632	-	203	148271386	-	CMM_0207	-	hypothetical protein
209	 72.73	0	272795..273652	+	285	148271387	-	CMM_0208	-	putative membrane-associated phospholipid phosphatase
210	 65.42	-1	273681..273920	+	79	148271388	-	CMM_0209	-	hypothetical protein
211	 73.76	0	273960..274382	+	140	148271389	-	CMM_0210	-	hypothetical protein
212	 71.62	0	274410..275459	-	349	148271390	-	CMM_0211	-	putative monooxygenase
213	 67.31	-1	275539..275694	-	51	148271391	-	CMM_0212	-	hypothetical protein
214	 67.83	-1	275764..276108	+	114	148271392	-	CMM_0213	-	hypothetical protein
215	 74.46	0	276105..276335	-	76	148271393	-	CMM_0214	-	hypothetical protein
216	 73.96	0	276332..276907	-	191	148271394	-	CMM_0215	-	TetR family transcriptional regulator
217	 75.18	0	277004..278119	+	371	148271395	-	CMM_0216	-	putative Zn-dependant oxidoreductase
218	 71.14	0	278116..278919	-	267	148271396	-	CMM_0217	-	hypothetical protein
219	 72.32	0	278916..279569	-	217	148271397	-	CMM_0218	-	hypothetical protein
220	 75.67	0	279717..280016	+	99	148271398	-	CMM_0219	-	hypothetical protein
221	 74.02	0	280058..280642	+	194	148271399	-	CMM_0220	-	hypothetical protein
222	 71.11	0	280668..280982	-	104	148271400	-	CMM_0221	-	putative multidrug resistance membrane protein
223	 76.52	0	280982..281377	-	131	148271401	-	CMM_0222	-	putative multidrug resistance membrane protein
224	 75.76	0	281510..282169	-	219	148271402	-	CMM_0223	-	putative phosphatase
225	 77.61	+1	282255..283451	+	398	148271403	-	CMM_0224	-	putative glycosyl transferase
226	 75.19	0	283730..284890	+	386	148271404	-	CMM_0225	-	putative sarcosine oxidase
227	 77.43	+1	284921..285598	-	225	148271405	-	CMM_0226	-	hypothetical protein
228	 73.02	0	285732..286691	-	319	148271406	-	CMM_0227	-	putative acetyl xylan esterase
229	 73.70	0	286773..287369	-	198	148271407	-	CMM_0228	-	TetR family transcriptional regulator
230	 74.65	0	287456..289510	-	684	148271408	-	CMM_0229	-	putative acyl esterase
231	 75.49	0	289507..291240	-	577	148271409	-	CMM_0230	-	putative peptide ABC transporter, ATP-binding protein
232	 72.22	0	291237..292118	-	293	148271410	-	CMM_0231	-	putative peptide ABC transporter, permease component
233	 71.27	0	292115..293134	-	339	148271411	-	CMM_0232	-	putative peptide ABC transporter, permease component
234	 70.53	0	293131..294786	-	551	148271412	-	CMM_0233	-	putative peptide ABC transporter, substrate-binding protein
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.