IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1685	 76.42	0	1905363..1905680	+	105	148272863	-	CMM_1681	-	hypothetical protein
1686	 75.54	0	1905677..1906465	+	262	148272864	glpQ2	CMM_1682	-	putative glycerophosphoryl diester phosphodiesterase
1687	 72.68	0	1906526..1906891	+	121	148272865	-	CMM_1683	-	hypothetical protein
1688	 73.54	0	1906979..1908520	-	513	148272866	-	CMM_1684	-	putative apolipoprotein N-acyltransferase
1689	 72.01	0	1908562..1911033	-	823	148272867	-	CMM_1685	-	putative helicase
1690	 66.53	-1	1911128..1911880	-	250	148272868	tatC	CMM_1686	-	Sec-independent twin-arginine protein translocase
1691	 70.72	0	1911935..1912279	-	114	148272869	tatA	CMM_1687	-	sec-independent twin-arginine protein translocase protein
1692	 74.44	0	1912477..1913466	-	329	148272870	-	CMM_1688	-	DeoR family transcriptional regulator
1693	 73.31	0	1913463..1914470	-	335	148272871	-	CMM_1689	-	putative transcriptional regulator
1694	 74.14	0	1914519..1915562	-	347	148272872	-	CMM_1690	-	putative peptidyl-prolyl cis-trans isomerase
1695	 72.96	0	1915624..1916688	-	354	148272873	-	CMM_1691	-	putative methyltransferase
1696	 73.99	0	1916685..1917380	-	231	148272874	-	CMM_1692	-	putative phosphatase
1697	 72.29	0	1917473..1918432	+	319	148272875	-	CMM_1693	-	hypothetical protein
1698	 75.72	0	1918448..1919728	-	426	148272876	cysS2	CMM_1694	-	cysteinyl-tRNA synthetase
1699	 69.96	0	1919733..1920551	-	272	148272877	bacA	CMM_1695	-	undecaprenol kinase
1700	 71.01	0	1920594..1921904	-	436	148272878	-	CMM_1696	-	hypothetical protein
1701	 70.30	0	1922243..1923259	+	338	148272879	corA1	CMM_1697	-	Mg2+/Co2+ transporter
1702	 73.60	0	1923304..1924269	+	321	148272880	-	CMM_1698	-	putative nucleoside-diphosphate-sugar epimerase
1703	 79.49	+1	1924278..1925618	-	446	148272881	dnaJ3	CMM_1699	-	curved DNA binding protein
1704	 72.27	0	1925869..1926510	+	213	148272882	-	CMM_1700	-	glycine betaine/carnitine/choline ABC transporter, permease component
1705	 73.33	0	1926503..1927792	+	429	148272883	-	CMM_1701	-	glycine betaine/carnitin ABC transporter ATP-binding protein
1706	 72.92	0	1927789..1928556	+	255	148272884	-	CMM_1702	-	putative glycine/betaine/choline ABC transporter, permease
1707	 71.23	0	1928559..1929566	+	335	148272885	-	CMM_1703	-	putative glycine/betaine ABC transporter,substrate-binding protein
1708	 72.25	0	1929809..1931617	-	602	148272886	-	CMM_1704	-	putative DNA or RNA helicase
1709	 77.25	+1	1931818..1933017	-	399	148272887	-	CMM_1705	-	putative acyl-CoA dehydrogenase
1710	 73.24	0	1933069..1933920	-	283	148272888	-	CMM_1706	-	hypothetical protein
1711	 74.75	0	1934046..1934837	+	263	148272889	-	CMM_1707	-	putative esterase
1712	 74.49	0	1934853..1936067	-	404	148272890	pbpX	CMM_1708	-	D-alanyl-D-alanine carboxypeptidase
1713	 74.81	0	1936064..1936873	-	269	148272891	-	CMM_1709	-	hypothetical protein
1714	 73.33	0	1937030..1937884	+	284	148272892	-	CMM_1710	-	Sir2 family NAD-dependent protein deacetylase
1715	 77.04	+1	1937881..1938516	+	211	148272893	-	CMM_1711	-	phosphoglycerate mutase
1716	 74.52	0	1938570..1939664	-	364	148272894	-	CMM_1712	-	glycosyl transferase family protein
1717	 74.92	0	1939661..1940557	-	298	148272895	-	CMM_1713	-	putative hydrolase
1718	 66.96	-1	1940695..1942416	+	573	148272896	-	CMM_1714	-	putative trehalose synthase
1719	 73.50	0	1942427..1943128	+	233	148272897	dnaQ	CMM_1715	-	DNA polymerase III subunit epsilon
1720	 63.57	-2	1943205..1943462	-	85	148272898	rpmE	CMM_1716	-	50S ribosomal protein L31
1721	 72.83	0	1943594..1944388	-	264	148272899	modF	CMM_1717	-	putative molybdate ABC transporter ATP-binding subunit
1722	 72.91	0	1944470..1945654	-	394	148272900	-	CMM_1718	-	putative glycosyl transferase
1723	 67.71	-1	1945701..1946942	+	413	148272901	glgC	CMM_1719	-	glucose-1-phosphate adenylyltransferase
1724	 75.25	0	1946939..1947637	+	232	148272902	serB2	CMM_1720	-	hypothetical protein
1725	 75.24	0	1947658..1948614	-	318	148272903	-	CMM_1721	-	putative proteinkinase or phosphotransferase
1726	 71.73	0	1948638..1949348	-	236	148272904	-	CMM_1722	-	putative 3-oxoacyl-[acyl-carrier protein] reductase
1727	 72.81	0	1949468..1949923	+	151	148272905	-	CMM_1723	-	hypothetical protein
1728	 74.81	0	1949920..1950177	+	85	148272906	-	CMM_1724	-	hypothetical protein
1729	 72.10	0	1950174..1951019	+	281	148272907	-	CMM_1725	-	hypothetical protein
1730	 69.67	0	1951025..1952623	-	532	148272908	-	CMM_1726	-	putative ABC transporter ATP-binding protein
1731	 66.96	-1	1952848..1953183	-	111	148272909	-	CMM_1727	-	hypothetical protein
1732	 67.32	-1	1953180..1953950	-	256	148272910	-	CMM_1728	-	putative ABC transporter, ATP-binding protein
1733	 69.16	0	1953964..1954284	-	106	148272911	-	CMM_1729	-	putative 2Fe-2S ferredoxin
1734	 72.55	0	1954281..1955504	-	407	148272912	-	CMM_1730	-	hypothetical protein
1735	 66.31	-1	1955505..1956923	-	472	148272913	-	CMM_1731	-	hypothetical protein
1736	 71.91	0	1957190..1958200	+	336	148272914	ctaA	CMM_1732	-	membrane protein, putative cytochrome oxidase assembly protein
1737	 68.62	-1	1958420..1959340	-	306	148272915	ctaB	CMM_1733	-	putative protoheme IX farnesyltransferase
1738	 70.35	0	1959514..1961604	+	696	148272916	tktA	CMM_1734	-	transketolase
1739	 68.55	-1	1961759..1962874	+	371	148272917	talA	CMM_1735	-	transaldolase
1740	 73.87	0	1962871..1964466	+	531	148272918	pgiA	CMM_1736	-	hypothetical protein
1741	 69.00	0	1964505..1966046	+	513	148272919	zwfA2	CMM_1737	-	glucose-6-phosphate 1-dehydrogenase
1742	 73.07	0	1966043..1967041	+	332	148272920	opcA	CMM_1738	-	putative glucose-6-P dehydrogenase effector
1743	 71.60	0	1967038..1967808	+	256	148272921	pglA	CMM_1739	-	putative 6-phosphogluconolactonase
1744	 70.73	0	1968002..1968370	-	122	148272922	-	CMM_1740	-	putative electron transport protein
1745	 64.29	-2	1968382..1968633	-	83	148272923	secG	CMM_1741	-	preprotein translocase subunit SecG
1746	 72.68	0	1968777..1969574	-	265	148272924	tpiA	CMM_1742	-	hypothetical protein
1747	 72.35	0	1969571..1970785	-	404	148272925	pgk	CMM_1743	-	phosphoglycerate kinase
1748	 67.96	-1	1970792..1971799	-	335	148272926	gapA	CMM_1744	-	glyceraldehyde 3-phosphate dehydrogenase
1749	 65.07	-1	1971927..1972553	-	208	148272927	sodA	CMM_1745	-	hypothetical protein
1750	 73.29	0	1972722..1973702	-	326	148272928	whiA	CMM_1746	-	hypothetical protein
1751	 70.78	0	1973732..1974607	-	291	148272929	-	CMM_1747	-	hypothetical protein
1752	 70.66	0	1974683..1976611	-	642	148272930	uvrC	CMM_1748	-	excinuclease ABC subunit C
1753	 68.89	0	1976611..1979532	-	973	148272931	uvrA	CMM_1749	-	excinuclease ABC subunit A
1754	 67.88	-1	1979615..1981681	-	688	148272932	uvrB	CMM_1750	-	excinuclease ABC subunit B
1755	 75.28	0	1981691..1982305	-	204	148272933	coaE	CMM_1751	-	hypothetical protein
1756	 66.80	-1	1982392..1983846	-	484	148272934	rpsA	CMM_1752	-	30S ribosomal protein S1
1757	 73.51	0	1984033..1985712	-	559	148272935	-	CMM_1753	-	hypothetical protein
1758	 74.95	0	1985709..1986167	-	152	148272936	-	CMM_1754	-	PTS system, fructose-specific IIA/fpr component
1759	 70.06	0	1986210..1988894	-	894	148272937	polA1	CMM_1755	-	DNA polymerase I
1760	 71.03	0	1988948..1989382	+	144	148272938	-	CMM_1756	-	putative thioesterase
1761	 68.64	-1	1989422..1990030	-	202	148272939	-	CMM_1757	-	putative response regulator involved in antitermination
1762	 69.78	0	1990294..1991739	-	481	148272940	pykA	CMM_1758	-	hypothetical protein
1763	 72.29	0	1991826..1993283	-	485	148272941	gltD	CMM_1759	-	glutamate synthase subunit beta
1764	 70.73	0	1993276..1997847	-	1523	148272942	gltB	CMM_1760	-	glutamate synthase (NADPH), alpha subunit
1765	 70.19	0	1997955..1998977	-	340	148272943	-	CMM_1761	-	prolipoprotein diacylglyceryl transferase
1766	 75.15	0	1999049..1999861	-	270	148272944	trpA	CMM_1762	-	tryptophan synthase subunit alpha
1767	 71.03	0	1999858..2001072	-	404	148272945	trpB	CMM_1763	-	tryptophan synthase subunit beta
1768	 73.87	0	2001069..2001845	-	258	148272946	trpC	CMM_1764	-	indole-3-glycerol-phosphate synthase
1769	 67.49	-1	2001845..2002087	-	80	148272947	-	CMM_1765	-	hypothetical protein
1770	 77.93	+1	2002192..2002830	-	212	148272948	-	CMM_1766	-	hypothetical protein
1771	 73.53	0	2002830..2004389	-	519	148272949	trpE1	CMM_1767	-	anthranilate synthase component I
1772	 73.68	0	2004386..2004784	-	132	148272950	hisI	CMM_1768	-	phosphoribosyl-AMP cyclohydrolase
1773	 74.12	0	2004781..2005572	-	263	148272951	hisF	CMM_1769	-	imidazole glycerol phosphate synthase subunit HisF
1774	 72.02	0	2005575..2006414	-	279	148272952	hisG	CMM_1770	-	ATP phosphoribosyltransferase
1775	 69.70	0	2006463..2006726	-	87	148272953	hisE	CMM_1771	-	phosphoribosyl-ATP pyrophosphatase
1776	 72.63	0	2006826..2007194	-	122	148272954	-	CMM_1772	-	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)
1777	 72.05	0	2007229..2007897	-	222	148272955	rpeA	CMM_1773	-	ribulose-phosphate 3-epimerase
1778	 77.60	+1	2007908..2009407	-	499	148272956	-	CMM_1774	-	putative rRNA cytosine-C5-methylases
1779	 75.60	0	2009404..2010321	-	305	148272957	fmtA	CMM_1775	-	hypothetical protein
1780	 78.06	+1	2010413..2012509	-	698	148272958	priA	CMM_1776	-	primosome assembly protein PriA
1781	 71.78	0	2012552..2013763	-	403	148272959	metK	CMM_1777	-	S-adenosylmethionine synthetase
1782	 75.21	0	2013803..2015020	-	405	148272960	dfpA	CMM_1778	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1783	 63.70	-2	2015099..2015368	-	89	148272961	rpoZ	CMM_1779	-	DNA-directed RNA polymerase subunit omega
1784	 72.61	0	2015417..2016325	-	302	148272962	gmkA	CMM_1780	-	putative guanylate kinase putative guanylate kinase (GMP kinase)/integration host factor (IHF) fusion protein
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.