IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1406	 74.12	0	1590745..1593306	+	853	148272584	ligA	CMM_1404	-	NAD-dependent DNA ligase LigA
1407	 76.43	0	1593419..1594801	+	460	148272585	-	CMM_1405	-	hypothetical protein
1408	 76.10	0	1594813..1595268	-	151	148272586	-	CMM_1406	-	putative secreted protein
1409	 73.44	0	1595316..1595684	+	122	148272587	gatC	CMM_1407	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1410	 73.64	0	1595692..1597239	+	515	148272588	gatA	CMM_1408	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1411	 70.86	0	1597239..1598741	+	500	148272589	gatB	CMM_1409	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1412	 74.73	0	1598738..1600375	+	545	148272590	-	CMM_1410	-	putative ABC transporter ATP-binding protein
1413	 76.30	0	1600400..1602049	-	549	148272591	-	CMM_1411	-	putative secreted protein
1414	 73.50	0	1602196..1602912	+	238	148272592	-	CMM_1412	-	hypothetical protein
1415	 76.98	+1	1603039..1603707	+	222	148272593	-	CMM_1413	-	hypothetical protein
1416	 74.19	0	1603756..1605444	-	562	148272594	-	CMM_1414	-	acyl-CoA synthetase
1417	 74.94	0	1605541..1605987	-	148	148272595	-	CMM_1415	-	hypothetical protein
1418	 75.09	0	1606061..1607509	-	482	148272596	-	CMM_1416	-	putative dehydrogenase
1419	 72.17	0	1607519..1608517	-	332	148272597	-	CMM_1417	-	short chain dehydrogenase
1420	 73.06	0	1608615..1610303	-	562	148272598	-	CMM_1418	-	acyl-CoA synthetase
1421	 75.48	0	1610368..1611297	-	309	148272599	-	CMM_1419	-	putative short chain dehydrogenase/oxidoreductase
1422	 77.50	+1	1611781..1612998	+	405	148272600	argE	CMM_1420	-	putative acetylornithine deacetylase
1423	 74.59	0	1612995..1613486	-	163	148272601	-	CMM_1421	-	putative phosphoesterase
1424	 75.47	0	1613567..1614100	+	177	148272602	-	CMM_1422	-	putative acetyltransferase
1425	 74.96	0	1614159..1614773	+	204	148272603	-	CMM_1423	-	putative sulfite oxidase
1426	 76.97	+1	1614770..1615516	+	248	148272604	-	CMM_1424	-	putative oxidoreductase
1427	 76.59	0	1615581..1616114	+	177	148272605	-	CMM_1425	-	hypothetical protein
1428	 75.08	0	1616230..1617228	+	332	148272606	-	CMM_1426	-	hypothetical protein
1429	 73.55	0	1617311..1618603	+	430	148272607	dinB	CMM_1427	-	DNA polymerase IV
1430	 75.79	0	1618615..1619118	+	167	148272608	-	CMM_1428	-	hypothetical protein
1431	 72.83	0	1619167..1620480	-	437	148272609	udgA	CMM_1429	-	UDP-glucose 6-dehydrogenase
1432	 71.82	0	1620650..1622452	-	600	148272610	treZ	CMM_1430	-	maltooligosyl trehalose trehalohydrolase
1433	 73.43	0	1622449..1624800	-	783	148272611	treY	CMM_1431	-	maltooligosyltrehalose synthase
1434	 68.75	-1	1624797..1627001	-	734	148272612	treX	CMM_1432	-	putative glucan debranching enzyme
1435	 68.77	-1	1627212..1627544	+	110	148272613	-	CMM_1433	-	hypothetical protein
1436	 73.60	0	1627819..1628481	+	220	148272614	-	CMM_1434	-	putative ABC-type transporter, permease component
1437	 78.76	+1	1628484..1630046	+	520	148272615	-	CMM_1435	-	putative ABC transporter, ATP-binding protein
1438	 76.73	+1	1630043..1630837	+	264	148272616	-	CMM_1436	-	putative ABC transporter, permease component
1439	 79.05	+1	1630827..1631375	+	182	148272617	-	CMM_1437	-	hypothetical protein
1440	 69.60	0	1631385..1631657	+	90	148272618	-	CMM_1438	-	hypothetical protein
1441	 68.66	-1	1631752..1632102	-	116	148272619	-	CMM_1439	-	hypothetical protein
1442	 69.24	0	1632354..1632974	-	206	148272620	ornA	CMM_1440	-	oligoribonuclease
1443	 68.52	-1	1633031..1633246	+	71	148272621	-	CMM_1441	-	hypothetical protein
1444	 77.56	+1	1633300..1633611	+	103	148272622	-	CMM_1442	-	putative thioredoxin
1445	 70.80	0	1633739..1634560	+	273	148272623	nadE	CMM_1443	-	NAD synthetase
1446	 74.15	0	1634639..1635346	-	235	148272624	-	CMM_1444	-	hypothetical protein
1447	 73.00	0	1635428..1635664	-	78	148272625	-	CMM_1445	-	hypothetical protein
1448	 68.37	-1	1635835..1636362	+	175	148272626	msrA	CMM_1446	-	putative peptide methionine sulfoxide reductase
1449	 71.86	0	1636462..1636692	+	76	148272627	-	CMM_1447	-	hypothetical protein
1450	 76.13	0	1636758..1637201	+	147	148272628	-	CMM_1448	-	hypothetical protein
1451	 72.52	0	1637198..1637761	+	187	148272629	-	CMM_1449	-	MarR family transcriptional regulator
1452	 76.37	0	1637758..1638231	+	157	148272630	-	CMM_1450	-	putative secreted protein
1453	 67.68	-1	1638295..1639977	+	560	148272631	-	CMM_1451	-	putative ABC transporter ATP-binding protein
1454	 73.54	0	1639982..1640461	+	159	148272632	-	CMM_1452	-	putative thioesterase
1455	 72.19	0	1640482..1641387	-	301	148272633	tesB	CMM_1453	-	putative acyl-CoA thioesterase II
1456	 78.45	+1	1641471..1642166	+	231	148272634	-	CMM_1454	-	hypothetical protein
1457	 70.20	0	1642194..1642589	-	131	148272635	glbO	CMM_1455	-	hemoglobin-like protein
1458	 71.67	0	1642589..1643908	-	439	148272636	-	CMM_1456	-	hypothetical protein
1459	 71.07	0	1644071..1646614	-	847	148272637	pepN	CMM_1457	-	hypothetical protein
1460	 71.13	0	1646766..1647392	+	208	148272638	-	CMM_1458	-	hypothetical protein
1461	 71.78	0	1647509..1647997	+	162	148272639	rpiA	CMM_1459	-	ribose-5-phosphate isomerase B
1462	 72.02	0	1648004..1648993	+	329	148272640	mutM	CMM_1460	-	putative formamidopyrimidine-DNA glycosylase involved in DNA repair
1463	 69.96	0	1649193..1649678	-	161	148272641	dpsA	CMM_1461	-	putative stress induced DNA-binding protein
1464	 77.80	+1	1649831..1655266	-	1811	148272642	-	CMM_1462	-	hypothetical protein
1465	 68.73	-1	1655837..1657291	+	484	148272643	tig	CMM_1463	-	trigger factor
1466	 65.82	-1	1657490..1658077	+	195	148272644	clpP1	CMM_1464	-	ATP-dependent protease, proteolytic subunit
1467	 69.46	0	1658114..1658794	+	226	148272645	clpP2	CMM_1465	-	ATP-dependent Clp protease proteolytic subunit
1468	 69.82	0	1658859..1660001	-	380	148272646	-	CMM_1466	-	putative monooxygenase
1469	 67.60	-1	1660153..1661433	+	426	148272647	clpX	CMM_1467	-	ATP-dependent protease ATP-binding subunit
1470	 72.24	0	1661515..1663578	-	687	148272648	dcpA	CMM_1468	-	putative peptidyl-dipeptidase
1471	 73.63	0	1663618..1664421	+	267	148272649	-	CMM_1469	-	putative methylase
1472	 70.83	0	1664434..1664697	-	87	148272650	-	CMM_1470	-	hypothetical protein
1473	 72.85	0	1664697..1665149	-	150	148272651	-	CMM_1471	-	GNAT family acetyltransferase
1474	 72.37	0	1665146..1667791	-	881	148272652	valS	CMM_1472	-	valyl-tRNA synthetase
1475	 74.45	0	1667927..1669867	-	646	148272653	pckA	CMM_1473	-	phosphoenolpyruvate carboxykinase
1476	 74.09	0	1669979..1671406	+	475	148272654	-	CMM_1474	-	Cro/CI family transcriptional regulator
1477	 77.84	+1	1671425..1673089	-	554	148272655	-	CMM_1475	-	putative oligopeptide ABC transporter, ATP-binding protein
1478	 75.96	0	1673086..1673946	-	286	148272656	-	CMM_1476	-	putative oligopeptide ABC transporter, permease component
1479	 77.68	+1	1673943..1675013	-	356	148272657	-	CMM_1477	-	putative oligopeptide ABC transporter, permease component
1480	 73.10	0	1675010..1676656	-	548	148272658	-	CMM_1478	-	putative oligopeptide ABC transporter, substrate-binding protein
1481	 77.72	+1	1676761..1677366	+	201	148272659	-	CMM_1479	-	TetR family transcriptional regulator
1482	 74.02	0	1677476..1678237	+	253	148272660	expA	CMM_1480	-	putative expansin
1483	 76.13	0	1678314..1679063	+	249	148272661	-	CMM_1481	-	putative SAM-dependant methyltransferase
1484	 71.21	0	1679310..1682612	+	1100	148272662	ileS	CMM_1482	-	isoleucyl-tRNA synthetase
1485	 73.21	0	1682609..1684183	+	524	148272663	folC	CMM_1483	-	hypothetical protein
1486	 75.50	0	1684180..1684677	+	165	148272664	-	CMM_1484	-	hypothetical protein
1487	 72.38	0	1684687..1685106	+	139	148272665	ndkA	CMM_1485	-	hypothetical protein
1488	 71.10	0	1685168..1685776	-	202	148272666	-	CMM_1486	-	hypothetical protein
1489	 74.15	0	1686082..1689102	+	1006	148272667	-	CMM_1487	-	putative ribonuclease
1490	 74.55	0	1689191..1689469	-	92	148272668	-	CMM_1488	-	hypothetical protein
1491	 64.72	-2	1689759..1690067	+	102	148272669	rplU	CMM_1489	-	50S ribosomal protein L21
1492	 70.98	0	1690092..1690346	+	84	148272670	rpmA	CMM_1490	-	50S ribosomal protein L27
1493	 72.51	0	1690466..1692004	+	512	148272671	obgE	CMM_1491	-	GTPase ObgE
1494	 74.36	0	1692008..1692787	+	259	148272672	proB	CMM_1492	-	gamma-glutamyl kinase
1495	 74.06	0	1692835..1694133	+	432	148272673	proA	CMM_1493	-	hypothetical protein
1496	 70.83	0	1694234..1694449	+	71	148272674	-	CMM_1494	-	hypothetical protein
1497	 68.99	0	1694467..1695069	+	200	148272675	nadD	CMM_1495	-	nicotinic acid mononucleotide adenylyltransferase
1498	 76.23	0	1695066..1696592	+	508	148272676	-	CMM_1496	-	hypothetical protein
1499	 69.58	0	1696632..1697009	+	125	148272677	-	CMM_1497	-	hypothetical protein
1500	 74.10	0	1697041..1697457	+	138	148272678	-	CMM_1498	-	hypothetical protein
1501	 73.63	0	1697691..1698695	-	334	148272679	-	CMM_1499	-	hypothetical protein
1502	 72.22	0	1698747..1699070	+	107	148272680	-	CMM_1500	-	hypothetical protein
1503	 78.51	+1	1699112..1700116	+	334	148272681	-	CMM_1501	-	putative esterase
1504	 75.79	0	1700253..1701041	+	262	148272682	-	CMM_1502	-	DeoR family transcriptional regulator
1505	 76.75	+1	1701038..1702009	+	323	148272683	fruK	CMM_1503	-	putative 1-phosphofructokinase
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.