IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1354	 77.22	+1	1529700..1531007	+	435	148272532	-	CMM_1352	-	hypothetical protein
1355	 77.75	+1	1531004..1533547	+	847	148272533	-	CMM_1353	-	putative membrane-bound protease
1356	 74.95	0	1533544..1535727	+	727	148272534	recG	CMM_1354	-	ATP-dependent DNA helicase
1357	 73.58	0	1535754..1536245	+	163	148272535	coaD	CMM_1355	-	hypothetical protein
1358	 66.67	-1	1536265..1536837	+	190	148272536	-	CMM_1356	-	hypothetical protein
1359	 65.20	-1	1536840..1537043	+	67	148272537	rpmF	CMM_1357	-	50S ribosomal protein L32
1360	 72.80	0	1537069..1537785	+	238	148272538	rnc	CMM_1358	-	ribonuclease III
1361	 74.47	0	1537792..1538727	+	311	148272539	fpgA	CMM_1359	-	formamidopyrimidine-DNA glycosylase
1362	 74.89	0	1538740..1539858	-	372	148272540	-	CMM_1360	-	putative acetyltransferase
1363	 75.99	0	1540015..1543770	+	1251	148272541	smcA	CMM_1361	-	putative chromosome segregation ATPase
1364	 70.32	0	1543791..1544666	+	291	148272542	ftsY	CMM_1362	-	Signal recognition particle component
1365	 70.42	0	1544729..1546300	+	523	148272543	ffhA	CMM_1363	-	signal recognition particle protein
1366	 72.49	0	1546445..1546822	+	125	148272544	-	CMM_1364	-	putative lyase
1367	 75.00	0	1546832..1548031	-	399	148272545	-	CMM_1365	-	membrane-associated serine protease
1368	 72.22	0	1548045..1549196	-	383	148272546	-	CMM_1366	-	hypothetical protein
1369	 69.57	0	1549452..1549865	+	137	148272547	rpsP	CMM_1367	-	30S ribosomal protein S16
1370	 71.73	0	1549869..1550105	+	78	148272548	-	CMM_1368	-	hypothetical protein
1371	 72.16	0	1550137..1550718	+	193	148272549	rimM	CMM_1369	-	putative 16S rRNA processing protein
1372	 71.62	0	1550720..1551406	+	228	148272550	trmD	CMM_1370	-	putative tRNA (guanine-N1)-methyltransferase
1373	 71.35	0	1551426..1552193	-	255	148272551	mapA1	CMM_1371	-	putative methionine aminopeptidase
1374	 74.80	0	1552264..1552755	+	163	148272552	-	CMM_1372	-	hypothetical protein
1375	 66.38	-1	1552926..1553270	+	114	148272553	rplS	CMM_1373	-	50S ribosomal protein L19
1376	 67.60	-1	1553337..1554089	+	250	148272554	lepB	CMM_1374	-	putative signal peptidase I
1377	 74.55	0	1554089..1554748	+	219	148272555	rnhB	CMM_1375	-	ribonuclease HII
1378	 62.65	-2	1554822..1555145	+	107	148272556	-	CMM_1376	-	hypothetical protein
1379	 73.11	0	1555257..1555613	+	118	148272557	-	CMM_1377	-	putative endonuclease
1380	 76.11	0	1555613..1557169	+	518	148272558	-	CMM_1378	-	putative ATP-dependant serine protease
1381	 76.85	+1	1557364..1558659	+	431	148272559	-	CMM_1379	-	hypothetical protein
1382	 76.03	0	1558833..1559729	+	298	148272560	xerC	CMM_1380	-	integrase/recombinase
1383	 76.09	0	1559800..1560351	-	183	148272561	-	CMM_1381	-	M23B family metallopeptidase
1384	 68.29	-1	1560452..1561927	+	491	148272562	-	CMM_1382	-	putative sugar MFS permease
1385	 67.83	-1	1562166..1563113	+	315	148272563	rpsB	CMM_1383	-	30S ribosomal protein S2
1386	 69.69	0	1563223..1564050	+	275	148272564	tsf	CMM_1384	-	elongation factor Ts
1387	 70.15	0	1564207..1564923	+	238	148272565	pyrH	CMM_1385	-	hypothetical protein
1388	 67.38	-1	1565037..1565594	+	185	148272566	frrA	CMM_1386	-	hypothetical protein
1389	 72.62	0	1565595..1566635	+	346	148272567	cdsA	CMM_1387	-	putative phosphatidate cytidylyltransferase
1390	 73.44	0	1566646..1567191	+	181	148272568	-	CMM_1388	-	hypothetical protein
1391	 72.20	0	1567295..1567999	+	234	148272569	-	CMM_1389	-	hypothetical protein
1392	 74.81	0	1568070..1569800	+	576	148272570	-	CMM_1390	-	CPA1 family Na+/H+ antiporter
1393	 72.73	0	1569836..1570132	+	98	148272571	-	CMM_1391	-	putative ATP-/GTP-binding protein
1394	 75.10	0	1570129..1570863	+	244	148272572	-	CMM_1392	-	hypothetical protein
1395	 67.61	-1	1570892..1571950	-	352	148272573	-	CMM_1393	-	AI-E2 family membrane protein
1396	 77.59	+1	1571980..1573755	-	591	148272574	-	CMM_1394	-	hypothetical protein
1397	 74.25	0	1574038..1575897	+	619	148272575	-	CMM_1395	-	hypothetical protein
1398	 75.52	0	1575894..1576898	+	334	148272576	-	CMM_1396	-	putative thioredoxin
1399	 72.29	0	1576974..1579553	-	859	148272577	glgB	CMM_1397	-	glycogen branching enzyme
1400	 71.01	0	1579559..1581697	-	712	148272578	-	CMM_1398	-	putative glycosidase
1401	 74.41	0	1582236..1584791	+	851	148272579	glgP	CMM_1399	-	putative glucan phosphorylase
1402	 75.61	0	1584831..1586138	-	435	148272580	-	CMM_1400	-	hypothetical protein
1403	 74.31	0	1586295..1588373	-	692	148272582	glgX	CMM_1401	-	putative glycosyl hydrolase
1404	 77.03	+1	1588372..1589577	+	401	148272581	csdA	CMM_1402	-	putative cysteine desulfurase
1405	 73.80	0	1589574..1590737	+	387	148272583	trmU	CMM_1403	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1406	 74.12	0	1590745..1593306	+	853	148272584	ligA	CMM_1404	-	NAD-dependent DNA ligase LigA
1407	 76.43	0	1593419..1594801	+	460	148272585	-	CMM_1405	-	hypothetical protein
1408	 76.10	0	1594813..1595268	-	151	148272586	-	CMM_1406	-	putative secreted protein
1409	 73.44	0	1595316..1595684	+	122	148272587	gatC	CMM_1407	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1410	 73.64	0	1595692..1597239	+	515	148272588	gatA	CMM_1408	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1411	 70.86	0	1597239..1598741	+	500	148272589	gatB	CMM_1409	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1412	 74.73	0	1598738..1600375	+	545	148272590	-	CMM_1410	-	putative ABC transporter ATP-binding protein
1413	 76.30	0	1600400..1602049	-	549	148272591	-	CMM_1411	-	putative secreted protein
1414	 73.50	0	1602196..1602912	+	238	148272592	-	CMM_1412	-	hypothetical protein
1415	 76.98	+1	1603039..1603707	+	222	148272593	-	CMM_1413	-	hypothetical protein
1416	 74.19	0	1603756..1605444	-	562	148272594	-	CMM_1414	-	acyl-CoA synthetase
1417	 74.94	0	1605541..1605987	-	148	148272595	-	CMM_1415	-	hypothetical protein
1418	 75.09	0	1606061..1607509	-	482	148272596	-	CMM_1416	-	putative dehydrogenase
1419	 72.17	0	1607519..1608517	-	332	148272597	-	CMM_1417	-	short chain dehydrogenase
1420	 73.06	0	1608615..1610303	-	562	148272598	-	CMM_1418	-	acyl-CoA synthetase
1421	 75.48	0	1610368..1611297	-	309	148272599	-	CMM_1419	-	putative short chain dehydrogenase/oxidoreductase
1422	 77.50	+1	1611781..1612998	+	405	148272600	argE	CMM_1420	-	putative acetylornithine deacetylase
1423	 74.59	0	1612995..1613486	-	163	148272601	-	CMM_1421	-	putative phosphoesterase
1424	 75.47	0	1613567..1614100	+	177	148272602	-	CMM_1422	-	putative acetyltransferase
1425	 74.96	0	1614159..1614773	+	204	148272603	-	CMM_1423	-	putative sulfite oxidase
1426	 76.97	+1	1614770..1615516	+	248	148272604	-	CMM_1424	-	putative oxidoreductase
1427	 76.59	0	1615581..1616114	+	177	148272605	-	CMM_1425	-	hypothetical protein
1428	 75.08	0	1616230..1617228	+	332	148272606	-	CMM_1426	-	hypothetical protein
1429	 73.55	0	1617311..1618603	+	430	148272607	dinB	CMM_1427	-	DNA polymerase IV
1430	 75.79	0	1618615..1619118	+	167	148272608	-	CMM_1428	-	hypothetical protein
1431	 72.83	0	1619167..1620480	-	437	148272609	udgA	CMM_1429	-	UDP-glucose 6-dehydrogenase
1432	 71.82	0	1620650..1622452	-	600	148272610	treZ	CMM_1430	-	maltooligosyl trehalose trehalohydrolase
1433	 73.43	0	1622449..1624800	-	783	148272611	treY	CMM_1431	-	maltooligosyltrehalose synthase
1434	 68.75	-1	1624797..1627001	-	734	148272612	treX	CMM_1432	-	putative glucan debranching enzyme
1435	 68.77	-1	1627212..1627544	+	110	148272613	-	CMM_1433	-	hypothetical protein
1436	 73.60	0	1627819..1628481	+	220	148272614	-	CMM_1434	-	putative ABC-type transporter, permease component
1437	 78.76	+1	1628484..1630046	+	520	148272615	-	CMM_1435	-	putative ABC transporter, ATP-binding protein
1438	 76.73	+1	1630043..1630837	+	264	148272616	-	CMM_1436	-	putative ABC transporter, permease component
1439	 79.05	+1	1630827..1631375	+	182	148272617	-	CMM_1437	-	hypothetical protein
1440	 69.60	0	1631385..1631657	+	90	148272618	-	CMM_1438	-	hypothetical protein
1441	 68.66	-1	1631752..1632102	-	116	148272619	-	CMM_1439	-	hypothetical protein
1442	 69.24	0	1632354..1632974	-	206	148272620	ornA	CMM_1440	-	oligoribonuclease
1443	 68.52	-1	1633031..1633246	+	71	148272621	-	CMM_1441	-	hypothetical protein
1444	 77.56	+1	1633300..1633611	+	103	148272622	-	CMM_1442	-	putative thioredoxin
1445	 70.80	0	1633739..1634560	+	273	148272623	nadE	CMM_1443	-	NAD synthetase
1446	 74.15	0	1634639..1635346	-	235	148272624	-	CMM_1444	-	hypothetical protein
1447	 73.00	0	1635428..1635664	-	78	148272625	-	CMM_1445	-	hypothetical protein
1448	 68.37	-1	1635835..1636362	+	175	148272626	msrA	CMM_1446	-	putative peptide methionine sulfoxide reductase
1449	 71.86	0	1636462..1636692	+	76	148272627	-	CMM_1447	-	hypothetical protein
1450	 76.13	0	1636758..1637201	+	147	148272628	-	CMM_1448	-	hypothetical protein
1451	 72.52	0	1637198..1637761	+	187	148272629	-	CMM_1449	-	MarR family transcriptional regulator
1452	 76.37	0	1637758..1638231	+	157	148272630	-	CMM_1450	-	putative secreted protein
1453	 67.68	-1	1638295..1639977	+	560	148272631	-	CMM_1451	-	putative ABC transporter ATP-binding protein
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.