IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 72.78   STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
78	 72.15	0	117213..118871	+	552	148271256	-	CMM_0078	-	putative NADH oxidase
79	 71.00	0	118888..119187	+	99	148271257	-	CMM_0079	-	hypothetical protein
80	 64.78	-2	119184..119501	+	105	148271258	-	CMM_0080	-	hypothetical protein
81	 64.02	-2	119736..120527	-	263	148271259	-	CMM_0081	-	putative short-chain dehydrogenase/reductase
82	 66.46	-1	120538..122925	-	795	148271260	bglB	CMM_0082	-	putative beta-glucosidase
83	 66.94	-1	123070..124908	-	612	148271261	bglC	CMM_0083	-	putative beta-glucosidase/beta-xylosidase
84	 64.91	-1	124978..125889	-	303	148271262	-	CMM_0084	-	putative sugar ABC transporter, permease component
85	 65.00	-1	125886..126968	-	360	148271263	-	CMM_0085	-	putative sugar ABC transporter, permease component
86	 64.63	-2	127043..128320	-	425	148271264	-	CMM_0086	-	putative sugar ABC transporter, binding protein
87	 67.20	-1	128542..129288	+	248	148271265	-	CMM_0087	-	TetR family transcriptional regulator
88	 66.60	-1	129377..130822	-	481	148271266	bglA	CMM_0088	-	putative beta-glucosidase
89	 66.76	-1	131048..132076	+	342	148271267	catR	CMM_0089	-	LacI family transcriptional regulator
90	 64.52	-2	132170..133801	-	543	148271268	tomA	CMM_0090	-	tomatinase, endo-1,4-beta-glycosidase
91	 66.82	-1	134140..134811	-	223	148271269	regB	CMM_0091	-	putative two-component system response regulator
92	 68.48	-1	134808..135962	-	384	148271270	regA	CMM_0092	-	putative two-component system sensor kinase
93	 68.55	-1	135959..138130	-	723	148271271	-	CMM_0093	-	RND family transporter
94	 66.67	-1	138337..139557	+	406	148271272	cytA	CMM_0094	-	putative cytochrome P450
95	 67.68	-1	139554..139751	+	65	148271273	cytB	CMM_0095	-	putative 3Fe-4S ferredoxin
96	 67.83	-1	139748..140950	+	400	148271274	cytC	CMM_0096	-	putative ferredoxin reductase
97	 68.15	-1	141009..143633	-	874	148271275	bglD	CMM_0097	-	glycosyl hydrolase family beta-glucosidase
98	 67.26	-1	143748..144755	-	335	148271276	-	CMM_0098	-	LacI family transcriptional regulator
99	 67.63	-1	144980..147469	+	829	148271277	bglE	CMM_0099	-	hypothetical protein
100	 67.11	-1	147484..149739	+	751	148271278	bglF	CMM_0100	-	beta-galactosidase
101	 64.19	-2	149904..151076	+	390	148271279	bglG	CMM_0101	-	beta-galactosidase
102	 66.92	-1	151096..152694	+	532	148271280	bglH	CMM_0102	-	putative beta-galactosidase
103	 67.06	-1	152728..154494	-	588	148271281	bglI	CMM_0103	-	beta-xylosidase glycosyl hydrolase family 43
104	 66.52	-1	154629..156008	+	459	148271282	-	CMM_0104	-	sugar permease
105	 64.91	-1	156005..158506	+	833	148271283	ramA	CMM_0105	-	putative alpha-rhamnosidase
106	 67.56	-1	159396..161624	-	742	148271284	aglA	CMM_0106	-	alpha-xylosidase YicI
107	 67.11	-1	161748..162659	-	303	148271285	-	CMM_0107	-	putative sugar ABC transporter, permease compound
108	 67.60	-1	162659..163621	-	320	148271286	-	CMM_0108	-	putative sugar ABC transporter, permease component
109	 67.92	-1	163695..165053	-	452	148271287	-	CMM_0109	-	putative sugar ABC transporter, binding protein
110	 66.17	-1	165201..166802	+	533	148271288	-	CMM_0110	-	xylosidase glycosyl hydrolase family protein
111	 71.38	0	166885..167691	+	268	148271289	-	CMM_0111	-	putative sugar phosphate isomerase/epimerase
112	 74.05	0	167688..168797	+	369	148271290	-	CMM_0112	-	putative dehydrogenase/oxidoreductase
113	 77.32	+1	168891..169622	+	243	148271291	-	CMM_0113	-	putative hydrolase
114	 77.87	+1	169619..170332	+	237	148271292	-	CMM_0114	-	hypothetical protein
115	 76.07	0	170415..171371	+	318	148271293	-	CMM_0115	-	hypothetical protein
116	 74.62	0	171496..172086	+	196	148271294	-	CMM_0116	-	putative dienelactone hydrolase
117	 73.20	0	172096..173580	-	494	148271295	-	CMM_0117	-	putative MFS-type efflux protein
118	 72.69	0	173663..174409	+	248	148271296	-	CMM_0118	-	TetR family transcriptional regulator
119	 75.72	0	174435..175130	-	231	148271297	-	CMM_0119	-	TetR family transcriptional regulator
120	 74.76	0	175154..178837	-	1227	148271298	uahA	CMM_0120	-	putative urea amidolyase
121	 69.99	0	178834..179526	-	230	148271299	-	CMM_0121	-	hypothetical protein
122	 75.33	0	179523..180365	-	280	148271300	-	CMM_0122	-	hypothetical protein
123	 71.78	0	180362..181945	-	527	148271301	-	CMM_0123	-	amino acid permease APC family
124	 75.09	0	182195..185590	-	1131	148271302	-	CMM_0124	-	putative acyl-CoA synthetase
125	 76.72	+1	185595..186320	-	241	148271303	-	CMM_0125	-	putative 4-phosphopantetheinyl transferase
126	 77.74	+1	186504..187316	-	270	148271304	-	CMM_0126	-	hypothetical protein
127	 74.46	0	187313..187864	-	183	148271305	sigX	CMM_0127	-	RNA polymerase ECF-subfamily sigma factor
128	 74.40	0	188085..188795	+	236	148271306	-	CMM_0128	-	hypothetical protein
129	 77.58	+1	188801..189469	+	222	148271307	-	CMM_0129	-	putative sortase
130	 77.39	+1	189495..189755	-	86	148271308	-	CMM_0130	-	hypothetical protein
131	 72.43	0	189769..190011	-	80	148271309	-	CMM_0131	-	hypothetical protein
132	 72.68	0	190129..191409	-	426	148271310	-	CMM_0132	-	hypothetical protein
133	 71.18	0	191551..192192	+	213	148271311	-	CMM_0133	-	putative pyroglutamylpeptidase
134	 77.61	+1	192438..193625	+	395	148271312	-	CMM_0134	-	hypothetical protein
135	 53.64	-2	193999..194973	-	324	148271313	-	CMM_0135	-	hypothetical protein
136	 51.16	-2	194970..196007	-	345	148271314	-	CMM_0136	-	hypothetical protein
137	 71.92	0	196333..197721	-	462	148271315	-	CMM_0137	-	putative MFS transporter
138	 72.96	0	197794..198540	+	248	148271316	-	CMM_0138	-	hypothetical protein
139	 74.22	0	198545..198928	-	127	148271317	-	CMM_0139	-	hypothetical protein
140	 73.94	0	198943..199437	-	164	148271318	-	CMM_0140	-	hypothetical protein
141	 70.87	0	199666..200331	+	221	148271319	-	CMM_0141	-	putative secreted protein
142	 73.50	0	200413..201393	+	326	148271320	-	CMM_0142	-	hypothetical protein
143	 70.58	0	201390..202232	+	280	148271321	-	CMM_0143	-	hypothetical protein
144	 73.37	0	202285..203268	-	327	148271322	-	CMM_0144	-	hypothetical protein
145	 69.55	0	203637..204329	-	230	148271323	-	CMM_0145	-	hypothetical protein
146	 78.91	+1	204455..205099	-	214	148271324	-	CMM_0146	-	putative peptidase
147	 75.99	0	205099..205731	-	210	148271325	-	CMM_0147	-	hypothetical protein
148	 78.15	+1	205728..206537	-	269	148271326	-	CMM_0148	-	hypothetical protein
149	 71.67	0	206653..207351	-	232	148271327	-	CMM_0149	-	hypothetical protein
150	 74.95	0	207498..210902	-	1134	148271328	-	CMM_0150	-	putative cell wall surface anchor family protein
151	 67.90	-1	211308..213179	+	623	148271329	dnaK	CMM_0151	-	molecular chaperone DnaK
152	 71.87	0	213176..213829	+	217	148271330	grpE	CMM_0152	-	heat shock chaperone
153	 73.27	0	213950..214963	+	337	148271331	dnaJ1	CMM_0153	-	chaperone, curved DNA-binding protein
154	 76.58	0	214965..215438	+	157	148271332	hspR	CMM_0154	-	heat shock transcriptional regulator
155	 76.63	0	215435..216658	+	407	148271333	-	CMM_0155	-	putative methyltransferase
156	 76.19	0	216711..217151	+	146	148271334	-	CMM_0156	-	hypothetical protein
157	 71.73	0	217183..217419	-	78	148271335	-	CMM_0157	-	Cro/CI family transcriptional regulator
158	 75.12	0	217419..218057	-	212	148271336	-	CMM_0158	-	hypothetical protein
159	 71.14	0	218138..218584	-	148	148271337	-	CMM_0159	-	hypothetical protein
160	 73.80	0	218974..219702	-	242	148271338	-	CMM_0160	-	hypothetical protein
161	 76.00	0	219867..220895	-	342	148271339	-	CMM_0161	-	LacI family transcriptional regulator
162	 73.56	0	221482..222105	-	207	148271340	-	CMM_0162	-	hypothetical protein
163	 77.75	+1	222222..223250	+	342	148271341	-	CMM_0163	-	hypothetical protein
164	 77.82	+1	223454..224224	+	256	148271342	-	CMM_0164	-	hypothetical protein
165	 75.64	0	224275..225177	+	300	148271343	fhuC	CMM_0165	-	putative Fe3+-siderophore ABC transporter,ATPase component
166	 71.62	0	225174..226163	+	329	148271344	fhuD	CMM_0166	-	putative Fe3+-siderophore ABC transporter,binding protein
167	 77.93	+1	226198..228354	+	718	148271345	fhuB	CMM_0167	-	iron-hydroxamate transporter permease subunit
168	 63.17	-2	228475..228960	+	161	148271346	-	CMM_0167a	-	hypothetical protein
169	 75.00	0	229937..231484	+	515	148271347	-	CMM_0168	-	putative two-component system sensor kinase
170	 73.76	0	231511..232173	+	220	148271348	-	CMM_0169	-	putative two-component system response regulator
171	 69.63	0	232240..232644	+	134	148271349	-	CMM_0170	-	putative tautomerase
172	 77.58	+1	232668..233180	-	170	148271350	-	CMM_0171	-	putative acetyltransferase
173	 69.62	0	233252..234946	-	564	148271351	-	CMM_0172	-	hypothetical protein
174	 70.25	0	235445..236977	+	510	148271352	sulP	CMM_0173	-	putative sulfate MFS permease
175	 77.17	+1	237042..237698	-	218	148271353	mntA	CMM_0174	-	putative Mn2+/Zn2+ ABC-type transporter, ATPase component
176	 76.32	0	237755..238624	+	289	148271354	mntB	CMM_0175	-	putative Mn2+/Zn2+ ABC-type transporter,permease component
177	 74.45	0	238675..239907	+	410	148271355	-	CMM_0176	-	hypothetical protein
72.78	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.