IslandPathversion 1.0

IslandPath Analysis: Clavibacter michiganensis subsp. michiganensis NCPPB 382



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 72.78 STD DEV: 3.94
Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome - 1..3297891
2984 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1184	 71.20	0	1347248..1347622	+	124	148272362	tatB	CMM_1182	-	putative sec-independent protein translocase protein, twin arginine pathway
1185	 75.38	0	1347668..1348585	-	305	148272363	-	CMM_1183	-	LysR family transcriptional regulator
1186	 71.70	0	1348665..1348823	+	52	148272364	-	CMM_1184	-	hypothetical protein
1187	 75.85	0	1348915..1350090	-	391	148272365	-	CMM_1185	-	putative ATP-binding protein
1188	 71.58	0	1350080..1350628	-	182	148272366	-	CMM_1186	-	hypothetical protein
1189	 72.23	0	1350612..1351958	-	448	148272367	-	CMM_1187	-	Mg2+ transporter
1190	 73.09	0	1352017..1352685	+	222	148272368	-	CMM_1188	-	hypothetical protein
1191	 74.74	0	1352714..1354336	-	540	148272369	pepP2	CMM_1189	-	putative Xaa-Pro aminopeptidase
1192	 73.22	0	1354385..1355422	-	345	148272370	-	CMM_1190	-	putative membrane protein with hydrolase activity
1193	 74.43	0	1355503..1356378	+	291	148272371	-	CMM_1191	-	hypothetical protein
1194	 71.83	0	1356467..1357996	-	509	148272372	rhlE	CMM_1192	-	putative ATP-dependent RNA helicase
1195	 73.62	0	1358104..1358865	+	253	148272373	-	CMM_1193	-	hypothetical protein
1196	 74.65	0	1358947..1359234	-	95	148272374	-	CMM_1194	-	hypothetical protein
1197	 69.33	0	1359244..1359468	-	74	148272375	-	CMM_1195	-	hypothetical protein
1198	 76.94	+1	1359662..1362931	+	1089	148272376	uvrD1	CMM_1196	-	putative ATP-dependant DNA helicase/nuclease
1199	 74.76	0	1362928..1366203	+	1091	148272377	uvrD2	CMM_1197	-	putative ATP-dependent DNA helicase
1200	 73.26	0	1366116..1367192	-	358	148272378	-	CMM_1198	-	putative phosphotransferase
1201	 74.74	0	1367328..1368281	+	317	148272379	-	CMM_1199	-	putative NTP pyrophosphohydrolase
1202	 74.14	0	1368292..1370205	+	637	148272380	uvrD3	CMM_1200	-	putative ATP-dependent DNA helicase
1203	 77.36	+1	1370069..1370956	-	295	148272381	-	CMM_1201	-	hypothetical protein
1204	 74.57	0	1371099..1372502	-	467	148272382	-	CMM_1202	-	hypothetical protein
1205	 74.18	0	1372715..1373806	+	363	148272383	-	CMM_1203	-	ATP-dependant serine protease
1206	 68.77	-1	1373947..1376898	+	983	148272384	-	CMM_1204	-	conseved membrane protein
1207	 73.72	0	1377208..1377873	-	221	148272385	-	CMM_1205	-	putative peroxiredoxin
1208	 73.29	0	1377992..1379713	-	573	148272386	-	CMM_1206	-	putative protein kinase
1209	 75.92	0	1379710..1380282	-	190	148272387	-	CMM_1207	-	PadR family transcriptional regulator
1210	 71.69	0	1380411..1381406	-	331	148272388	lipA	CMM_1208	-	lipoyl synthase
1211	 73.93	0	1381403..1382104	-	233	148272389	lipB	CMM_1209	-	lipoyltransferase
1212	 77.78	+1	1382208..1383107	+	299	148272390	-	CMM_1210	-	putative siderophore-interacting protein
1213	 75.51	0	1383261..1383848	+	195	148272391	-	CMM_1211	-	hypothetical protein
1214	 74.54	0	1383874..1384521	+	215	148272392	-	CMM_1212	-	hypothetical protein
1215	 69.98	0	1384572..1385234	+	220	148272393	-	CMM_1213	-	hypothetical protein
1216	 74.93	0	1385245..1385583	-	112	148272394	-	CMM_1214	-	hypothetical protein
1217	 75.34	0	1386030..1389488	+	1152	148272395	-	CMM_1215	-	hypothetical protein
1218	 76.54	0	1389546..1390244	-	232	148272396	-	CMM_1216	-	CDF family cation efflux protein
1219	 75.42	0	1390241..1390594	-	117	148272397	-	CMM_1217	-	ArsR family transcriptional regulator
1220	 75.11	0	1390705..1391142	+	145	148272398	-	CMM_1218	-	hypothetical protein
1221	 78.31	+1	1391174..1391800	-	208	148272399	-	CMM_1219	-	TetR family transcriptional regulator
1222	 77.15	+1	1391878..1393194	+	438	148272400	-	CMM_1220	-	putative carboxylesterase
1223	 75.85	0	1393337..1394131	+	264	148272401	-	CMM_1221	-	hypothetical protein
1224	 77.93	+1	1394148..1395008	-	286	148272402	-	CMM_1222	-	putative hydrolase
1225	 76.01	0	1395005..1395571	-	188	148272403	-	CMM_1223	-	putative acetyltransferase
1226	 70.77	0	1395742..1395936	+	64	148272404	-	CMM_1224	-	hypothetical protein
1227	 71.55	0	1396033..1397793	-	586	148272405	-	CMM_1225	-	putative ATP-dependent RNA helicase
1228	 76.46	0	1397886..1398641	-	251	148272406	-	CMM_1226	-	hypothetical protein
1229	 79.02	+1	1398721..1399578	-	285	148272407	-	CMM_1227	-	putative methyltransferase
1230	 74.29	0	1399626..1400255	+	209	148272408	-	CMM_1228	-	Cro/CI family transcriptional regulator
1231	 78.56	+1	1400252..1401739	-	495	148272409	-	CMM_1229	-	hypothetical protein
1232	 80.09	+1	1401878..1402093	-	71	148272410	-	CMM_1230	-	hypothetical protein
1233	 77.72	+1	1402248..1402871	-	207	148272411	-	CMM_1231	-	putative carboxylesterase/phospholipase
1234	 73.93	0	1402868..1403845	-	325	148272412	-	CMM_1232	-	putative dioxygenase
1235	 72.16	0	1403907..1404470	-	187	148272413	-	CMM_1233	-	hypothetical protein
1236	 75.35	0	1404553..1405680	+	375	148272414	-	CMM_1234	-	hypothetical protein
1237	 72.34	0	1405686..1406126	-	146	148272415	-	CMM_1235	-	hypothetical protein
1238	 76.30	0	1406232..1406501	+	89	148272416	-	CMM_1236	-	hypothetical protein
1239	 72.68	0	1406568..1407698	+	376	148272417	-	CMM_1237	-	putative NDP-sugar phosphate epimerase
1240	 76.92	+1	1407685..1408923	-	412	148272418	-	CMM_1238	-	hypothetical protein
1241	 74.54	0	1409053..1409979	+	308	148272419	-	CMM_1239	-	putative multidrug ABC transporter, ATPase component
1242	 71.30	0	1409976..1410839	+	287	148272420	-	CMM_1240	-	putative multidrug ABC transporter, permease component
1243	 77.57	+1	1410843..1412144	+	433	148272421	-	CMM_1241	-	putative two-component system, sensor kinase
1244	 77.19	+1	1412141..1412815	+	224	148272422	-	CMM_1242	-	putative two-component system, response regulator
1245	 68.15	-1	1413116..1414258	+	380	148272423	-	CMM_1243	-	putative sugar ABC transporter, substrate-binding protein
1246	 67.31	-1	1414382..1415926	+	514	148272424	-	CMM_1244	-	putative sugar ABC transporter, ATP-binding protein
1247	 69.56	0	1415923..1417131	+	402	148272425	-	CMM_1245	-	putative sugar ABC transporter, permease component
1248	 74.74	0	1417252..1417536	+	94	148272426	-	CMM_1246	-	hypothetical protein
1249	 75.28	0	1417546..1418346	-	266	148272427	sipX	CMM_1247	-	putative signal peptidase I
1250	 73.53	0	1418373..1419275	-	300	148272428	-	CMM_1248	-	hypothetical protein
1251	 74.30	0	1419272..1419874	-	200	148272429	-	CMM_1249	-	hypothetical protein
1252	 69.23	0	1419971..1420516	-	181	148272430	-	CMM_1250	-	hypothetical protein
1253	 74.86	0	1420874..1422520	+	548	148272431	-	CMM_1251	-	putative two-component system, sensor histidine kinase
1254	 68.85	0	1422657..1424486	+	609	148272432	-	CMM_1252	-	BCCT family choline/glycine betaine transporter
1255	 71.09	0	1424616..1425632	+	338	148272433	-	CMM_1253	-	putative diacylglycerol kinase
1256	 74.81	0	1425688..1426866	+	392	148272434	-	CMM_1254	-	putative ATPase
1257	 66.49	-1	1426991..1428094	-	367	148272435	-	CMM_1255	-	putative fatty acid desaturase
1258	 73.75	0	1428412..1429455	-	347	148272436	-	CMM_1256	-	putative Zn-dependent alcohol dehydrogenase
1259	 78.49	+1	1429505..1430248	-	247	148272437	-	CMM_1257	-	hypothetical protein
1260	 75.77	0	1430413..1431060	+	215	148272438	-	CMM_1258	-	hypothetical protein
1261	 74.40	0	1431088..1434114	-	1008	148272439	-	CMM_1259	-	putative alpha-mannosidase
1262	 67.66	-1	1434234..1435142	-	302	148272440	-	CMM_1260	-	putative sugar ABC transporter, permease component
1263	 70.55	0	1435145..1436149	-	334	148272441	-	CMM_1261	-	putative sugar ABC transporter, permease component
1264	 68.46	-1	1436152..1437543	-	463	148272442	-	CMM_1262	-	putative sugar ABC transporter, substrate binding protein
1265	 76.30	0	1437721..1438986	-	421	148272443	-	CMM_1263	-	ROK family transcriptional regulator
1266	 75.61	0	1439158..1440297	+	379	148272444	-	CMM_1264	-	hypothetical protein
1267	 78.88	+1	1440294..1440596	+	100	148272445	-	CMM_1265	-	hypothetical protein
1268	 74.56	0	1440613..1441524	-	303	148272446	-	CMM_1266	-	putative Zn-metalloprotease
1269	 77.62	+1	1441556..1442185	-	209	148272447	-	CMM_1267	-	putative DNA alkylation repair enzyme
1270	 75.05	0	1442182..1443195	-	337	148272448	-	CMM_1268	-	putative NAD-dependant epimerase
1271	 75.78	0	1443309..1443824	-	171	148272449	-	CMM_1269	-	hypothetical protein
1272	 73.87	0	1443821..1444195	-	124	148272450	clpS	CMM_1270	-	putative ATP-dependent Clp protease adaptor protein
1273	 74.54	0	1444284..1444982	-	232	148272451	-	CMM_1271	-	putative two-component system, response regulator
1274	 75.74	0	1444979..1446223	-	414	148272452	-	CMM_1272	-	putative two-component system sensor kinase
1275	 71.67	0	1446319..1447158	-	279	148272453	-	CMM_1273	-	putative ABC transporter, permease component
1276	 71.69	0	1447155..1448090	-	311	148272454	-	CMM_1274	-	putative multidrug ABC transporter, ATP-binding protein
1277	 73.63	0	1448221..1449426	-	401	148272455	-	CMM_1275	-	putative aminotransferase
1278	 67.89	-1	1449499..1450152	+	217	148272456	-	CMM_1276	-	hypothetical protein
1279	 70.62	0	1450416..1451048	+	210	148272457	-	CMM_1277	-	hypothetical protein
1280	 71.94	0	1451273..1452808	+	511	148272458	-	CMM_1278	-	putative serine protease
1281	 73.28	0	1452959..1454032	+	357	148272459	-	CMM_1279	-	putative glycosyl transferase
1282	 72.26	0	1454029..1454850	+	273	148272460	-	CMM_1280	-	putative transferase, putative phosphatidylglycerophosphate synthase
1283	 74.20	0	1454847..1455722	+	291	148272461	-	CMM_1281	-	putative glycosyltransferase
72.78	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.