IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.63   STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
903	 32.67	0	1093859..1095061	+	400	150015795	-	Cbei_0909	-	HK97 family phage major capsid protein
904	 30.88	0	1095161..1095445	+	94	150015796	-	Cbei_0910	-	uncharacterized phage protein
905	 31.86	0	1095442..1095780	+	112	150015797	-	Cbei_0911	-	phage head-tail adaptor, putative
906	 31.14	0	1095785..1096240	+	151	150015798	-	Cbei_0912	-	hypothetical protein
907	 28.46	0	1096242..1096733	+	163	150015799	-	Cbei_0913	-	hypothetical protein
908	 31.68	0	1096744..1097835	+	363	150015800	-	Cbei_0914	-	hypothetical protein
909	 33.33	0	1097855..1098286	+	143	150015801	-	Cbei_0915	-	phage-like element pbsx protein XkdM
910	 29.68	0	1098348..1098758	+	136	150015802	-	Cbei_0916	-	hypothetical protein
911	 33.02	0	1099046..1099999	+	317	150015803	-	Cbei_0917	-	hypothetical protein
912	 35.90	+1	1100203..1101060	+	285	150015804	-	Cbei_0918	-	hypothetical protein
913	 33.85	0	1101076..1101843	+	255	150015805	-	Cbei_0919	-	cell wall binding repeat-containing protein
914	 28.29	0	1101852..1102763	+	303	150015806	-	Cbei_0920	-	hypothetical protein
915	 32.71	0	1102772..1103092	+	106	150015807	-	Cbei_0921	-	hypothetical protein
916	 27.07	-1	1103109..1103555	+	148	150015808	-	Cbei_0922	-	hypothetical protein
917	 33.05	0	1103558..1104625	+	355	150015809	-	Cbei_0923	-	baseplate J family protein
918	 32.07	0	1104627..1106450	+	607	150015810	-	Cbei_0924	-	hypothetical protein
919	 29.70	0	1106452..1107057	+	201	150015811	-	Cbei_0925	-	phage-like element pbsx protein XkdT
920	 36.04	+1	1107072..1108550	+	492	150015812	-	Cbei_0926	-	hypothetical protein
921	 29.30	0	1108578..1108850	+	90	150015813	-	Cbei_0927	-	hypothetical protein
922	 28.70	0	1108843..1109058	+	71	150015814	-	Cbei_0928	-	hypothetical protein
923	 30.38	0	1109236..1109472	+	78	150015815	-	Cbei_0929	-	hypothetical protein
924	 31.31	0	1109488..1109883	+	131	150015816	-	Cbei_0930	-	hypothetical protein
925	 29.78	0	1109954..1110742	+	262	150015817	-	Cbei_0931	-	glycoside hydrolase family protein
926	 25.34	-1	1111208..1111570	-	120	150015818	-	Cbei_0932	-	XRE family transcriptional regulator
927	 31.66	0	1111658..1112134	+	158	150015819	-	Cbei_0933	-	ABC transporter substrate-binding protein
928	 31.25	0	1112169..1112936	+	255	150015820	-	Cbei_0934	-	ABC transporter related
929	 30.81	0	1112968..1113759	+	263	150015821	-	Cbei_0935	-	binding-protein-dependent transport systems inner membrane component
930	 31.09	0	1114063..1114419	+	118	150015822	-	Cbei_0936	-	LrgA family protein
931	 31.23	0	1114459..1115172	+	237	150015823	-	Cbei_0937	-	LrgB family protein
932	 26.21	-1	1115508..1116644	+	378	150015824	-	Cbei_0938	-	hypothetical protein
933	 30.19	0	1116818..1117867	-	349	150015825	-	Cbei_0939	-	D-galactose-binding periplasmic protein precursor
934	 32.14	0	1118041..1118625	-	194	150015826	-	Cbei_0940	-	flavin reductase domain-containing protein
935	 30.84	0	1118731..1120053	-	440	150015827	-	Cbei_0941	-	Serine-type D-Ala-D-Ala carboxypeptidase
936	 30.84	0	1120219..1120941	-	240	150015828	-	Cbei_0942	-	glutamine amidotransferase
937	 29.43	0	1120960..1122318	-	452	150015829	-	Cbei_0943	-	hypothetical protein
938	 26.21	-1	1122593..1124557	+	654	150015830	-	Cbei_0944	-	hypothetical protein
939	 28.80	0	1124574..1126934	+	786	150015831	-	Cbei_0945	-	peptidase U32
940	 33.21	0	1127088..1129448	+	786	150015832	-	Cbei_0946	-	recombination and DNA strand exchange inhibitor protein
941	 32.51	0	1129624..1130352	+	242	150015833	-	Cbei_0947	-	hypothetical protein
942	 33.33	0	1130634..1131269	-	211	150015834	-	Cbei_0948	-	hypothetical protein
943	 30.59	0	1131730..1132530	+	266	150015835	-	Cbei_0949	-	glycoside hydrolase family protein
944	 32.94	0	1133610..1134866	+	418	150015836	-	Cbei_0950	-	PTS system lactose/cellobiose family IIC subunit
945	 31.39	0	1134917..1135225	+	102	150015837	-	Cbei_0951	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
946	 30.38	0	1135239..1135577	+	112	150015838	-	Cbei_0952	-	phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
947	 29.81	0	1135777..1138476	+	899	150015839	-	Cbei_0953	-	sigma-54 factor interaction domain-containing protein
948	 27.50	0	1138631..1141405	+	924	150015840	-	Cbei_0954	-	sigma-54 factor interaction domain-containing protein
949	 28.61	0	1141528..1141950	+	140	150015841	-	Cbei_0955	-	PTS system fructose subfamily IIA component
950	 29.51	0	1141965..1142435	+	156	150015842	-	Cbei_0956	-	PTS system sorbose subfamily IIB component
951	 35.42	+1	1142450..1143214	+	254	150015843	-	Cbei_0957	-	phosphotransferase system PTS, sorbose-specific IIC subunit
952	 31.43	0	1143201..1144040	+	279	150015844	-	Cbei_0958	-	PTS system mannose/fructose/sorbose family IID component
953	 30.73	0	1144108..1145106	+	332	150015845	-	Cbei_0959	-	sugar isomerase (SIS)
954	 30.90	0	1145178..1146041	+	287	150015846	-	Cbei_0960	-	ribokinase-like domain-containing protein
955	 26.67	-1	1146248..1147117	-	289	150015847	-	Cbei_0961	-	phosphotransferase domain-containing protein
956	 28.33	0	1147542..1150301	+	919	150015848	-	Cbei_0962	-	sigma-54 factor interaction domain-containing protein
957	 26.08	-1	1150413..1150853	+	146	150015849	-	Cbei_0963	-	PTS system fructose subfamily IIA component
958	 31.04	0	1150831..1151310	+	159	150015850	-	Cbei_0964	-	PTS system sorbose subfamily IIB component
959	 34.97	+1	1151329..1152120	+	263	150015851	-	Cbei_0965	-	phosphotransferase system PTS, sorbose-specific IIC subunit
960	 31.96	0	1152113..1152913	+	266	150015852	-	Cbei_0966	-	PTS system mannose/fructose/sorbose family IID component
961	 29.36	0	1152942..1153997	+	351	150015853	-	Cbei_0967	-	sugar isomerase (SIS)
962	 25.90	-1	1154253..1155731	-	492	150015854	-	Cbei_0968	-	polysaccharide biosynthesis protein
963	 25.03	-1	1155912..1156778	+	288	150015855	-	Cbei_0969	-	helix-turn-helix domain-containing protein
964	 26.88	-1	1156951..1159167	-	738	150015856	-	Cbei_0970	-	peptidase M56, BlaR1
965	 25.51	-1	1159314..1159709	-	131	150015857	-	Cbei_0971	-	CopY family transcriptional regulator
966	 28.61	0	1160005..1162944	+	979	150015858	-	Cbei_0972	-	non-specific serine/threonine protein kinase
967	 29.30	0	1163230..1164096	-	288	150015859	-	Cbei_0973	-	RpiR family transcriptional regulator
968	 28.74	0	1164671..1165498	+	275	150015860	-	Cbei_0974	-	Cof-like hydrolase
969	 27.48	0	1165539..1166324	+	261	150015861	-	Cbei_0975	-	HisJ family histidinol phosphate phosphatase
970	 31.58	0	1166565..1167077	+	170	150015862	-	Cbei_0976	-	GCN5-related N-acetyltransferase
971	 33.17	0	1167177..1168412	-	411	150015863	-	Cbei_0977	-	major facilitator transporter
972	 30.79	0	1168583..1170037	+	484	150015864	-	Cbei_0978	-	major facilitator transporter
973	 32.24	0	1170378..1170926	-	182	150015865	-	Cbei_0979	-	hypothetical protein
974	 33.58	0	1171205..1172434	+	409	150015866	-	Cbei_0980	-	nuclease SbcCD, D subunit
975	 27.89	0	1172409..1175900	+	1163	150015867	-	Cbei_0981	-	SMC domain-containing protein
976	 30.88	0	1176228..1176797	+	189	150015868	-	Cbei_0982	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
977	 30.32	0	1177109..1178836	+	575	150015869	-	Cbei_0983	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
978	 27.88	0	1179374..1180474	+	366	150015870	-	Cbei_0984	-	TPR repeat-containing protein
979	 28.10	0	1180597..1181322	+	241	150015871	-	Cbei_0985	-	WecB/TagA/CpsF family glycosyl transferase
980	 28.42	0	1181367..1182893	+	508	150015872	-	Cbei_0986	-	integral membrane protein MviN
981	 27.60	0	1182905..1184194	+	429	150015873	-	Cbei_0987	-	hypothetical protein
982	 29.55	0	1184195..1185358	+	387	150015874	-	Cbei_0988	-	glycosyl transferase, group 1
983	 27.94	0	1185342..1186565	+	407	150015875	-	Cbei_0989	-	O-antigen polymerase
984	 29.95	0	1186622..1187272	+	216	150015876	-	Cbei_0990	-	formiminotransferase-cyclodeaminase
985	 39.87	+2	1187348..1187500	-	50	150015877	-	Cbei_0991	-	hypothetical protein
986	 26.10	-1	1187743..1188240	+	165	150015878	-	Cbei_0992	-	hypothetical protein
987	 32.77	0	1188496..1189383	-	295	150015879	-	Cbei_0993	-	Delta-lactam-biosynthetic de-N-acetylase
988	 32.06	0	1189944..1191041	+	365	150015880	-	Cbei_0994	-	translation-associated GTPase
989	 28.34	0	1191495..1193315	+	606	150015881	-	Cbei_0995	-	TPR repeat-containing protein
990	 30.37	0	1193384..1194361	+	325	150015882	-	Cbei_0996	-	mannose-6-phosphate isomerase, class I
991	 30.89	0	1194692..1195552	+	286	150015883	-	Cbei_0997	-	undecaprenyl pyrophosphate phosphatase
992	 32.51	0	1196228..1197325	+	365	150015884	-	Cbei_0998	-	6-phosphofructokinase
993	 29.34	0	1197420..1198196	+	258	150015885	-	Cbei_0999	-	beta-lactamase, putative
994	 31.72	0	1198499..1199425	+	308	150015886	pyrB	Cbei_1000	-	aspartate carbamoyltransferase catalytic subunit
995	 30.79	0	1199427..1199858	+	143	150015887	-	Cbei_1001	-	aspartate carbamoyltransferase regulatory subunit
996	 34.30	+1	1199878..1201113	+	411	150015888	-	Cbei_1002	-	dihydroorotase, multifunctional complex type
997	 33.79	0	1201509..1202381	+	290	150015889	pyrF	Cbei_1003	-	orotidine 5'-phosphate decarboxylase
998	 31.45	0	1202417..1203160	+	247	150015890	-	Cbei_1004	-	dihydroorotate dehydrogenase electron transfer subunit
999	 35.12	+1	1203182..1204078	+	298	150015891	-	Cbei_1005	-	dihydroorotate dehydrogenase 1B
1000	 31.85	0	1204170..1204844	+	224	150015892	pyrE	Cbei_1006	-	orotate phosphoribosyltransferase
1001	 31.63	0	1205539..1206300	+	253	150015893	-	Cbei_1007	-	stationary-phase survival protein SurE
1002	 28.78	0	1206333..1207715	-	460	150015894	-	Cbei_1008	-	hypothetical protein
30.63	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.