IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.63   STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
854	 27.86	0	1045162..1045929	+	255	150015746	-	Cbei_0860	-	transglutaminase domain-containing protein
855	 30.72	0	1046200..1047309	+	369	150015747	-	Cbei_0861	-	ABC transporter related
856	 24.97	-1	1047340..1048284	+	314	150015748	-	Cbei_0862	-	PucR family transcriptional regulator
857	 28.71	0	1048695..1049711	+	338	150015749	-	Cbei_0863	-	alanine racemase
858	 31.99	0	1049799..1051292	+	497	150015750	-	Cbei_0864	-	4-alpha-glucanotransferase
859	 30.45	0	1051295..1053655	+	786	150015751	-	Cbei_0865	-	glycogen/starch/alpha-glucan phosphorylase
860	 30.83	0	1053974..1054933	+	319	150015752	-	Cbei_0866	-	2-hydroxyacid dehydrogenase
861	 30.28	0	1055000..1055884	+	294	150015753	-	Cbei_0867	-	hypothetical protein
862	 31.54	0	1056195..1058363	+	722	150015754	-	Cbei_0868	-	DNA topoisomerase
863	 36.25	+1	1058427..1059317	-	296	150015755	-	Cbei_0869	-	short-chain dehydrogenase/reductase SDR
864	 26.76	-1	1059610..1060476	+	288	150015756	-	Cbei_0870	-	hypothetical protein
865	 38.52	+2	1060903..1062135	+	410	150015757	-	Cbei_0871	-	ammonium transporter
866	 29.69	0	1062609..1064609	+	666	150015758	-	Cbei_0872	-	methyl-accepting chemotaxis sensory transducer
867	 30.68	0	1064868..1065773	+	301	150015759	-	Cbei_0873	-	metallophosphoesterase
868	 29.39	0	1066488..1067222	+	244	150015760	-	Cbei_0874	-	hexapaptide repeat-containing transferase
869	 33.24	0	1067258..1069366	+	702	150015761	-	Cbei_0875	-	methyl-accepting chemotaxis sensory transducer
870	 33.67	0	1069474..1070949	-	491	150015762	-	Cbei_0876	-	sodium/proline symporter
871	 33.84	0	1071279..1071869	+	196	150015763	-	Cbei_0877	-	ABC transporter, periplasmic-binding, putative
872	 29.43	0	1071844..1073457	-	537	150015764	-	Cbei_0878	-	resolvase domain-containing protein
873	 25.90	-1	1073559..1074056	-	165	150015765	-	Cbei_0879	-	hypothetical protein
874	 25.36	-1	1074331..1075446	+	371	150015766	-	Cbei_0880	-	hypothetical protein
875	 27.69	0	1075437..1076216	+	259	150015767	-	Cbei_0881	-	hypothetical protein
876	 28.05	0	1076251..1076931	+	226	150015768	-	Cbei_0882	-	hypothetical protein
877	 28.50	0	1076938..1077351	+	137	150015769	-	Cbei_0883	-	hypothetical protein
878	 23.86	-2	1077807..1078640	-	277	150015770	-	Cbei_0884	-	hypothetical protein
879	 29.33	0	1078725..1080272	-	515	150015771	-	Cbei_0885	-	hypothetical protein
880	 28.65	0	1080355..1080696	-	113	150015772	-	Cbei_0886	-	XRE family transcriptional regulator
881	 22.89	-2	1080855..1081055	+	66	150015773	-	Cbei_0887	-	helix-turn-helix domain-containing protein
882	 30.32	0	1081108..1081539	+	143	150015774	-	Cbei_0888	-	putative prophage LambdaCh01, transcriptional regulator
883	 32.81	0	1081569..1081760	+	63	150015775	-	Cbei_0889	-	hypothetical protein
884	 26.00	-1	1081796..1082095	+	99	150015776	-	Cbei_0890	-	hypothetical protein
885	 27.32	-1	1082185..1082367	+	60	150015777	-	Cbei_0891	-	hypothetical protein
886	 30.70	0	1082415..1083248	+	277	150015778	-	Cbei_0892	-	hypothetical protein
887	 28.33	0	1083241..1084020	+	259	150015779	-	Cbei_0893	-	hypothetical protein
888	 28.40	0	1084294..1084617	-	107	150015780	-	Cbei_0894	-	hypothetical protein
889	 32.65	0	1084823..1084969	+	48	150015781	-	Cbei_0895	-	hypothetical protein
890	 28.30	0	1085034..1085351	-	105	150015782	-	Cbei_0896	-	hypothetical protein
891	 26.60	-1	1085395..1085706	-	103	150015783	-	Cbei_0897	-	hypothetical protein
892	 32.00	0	1086084..1086383	+	99	150015784	-	Cbei_0898	-	hypothetical protein
893	 26.72	-1	1086742..1087134	+	130	150015785	-	Cbei_0899	-	hypothetical protein
894	 30.36	0	1087570..1088175	+	201	150015786	-	Cbei_0900	-	phage integrase family protein
895	 20.00	-2	1088382..1088561	+	59	150015787	-	Cbei_0901	-	hypothetical protein
896	 28.19	0	1088636..1089316	+	226	150015788	-	Cbei_0902	-	hypothetical protein
897	 34.31	+1	1089442..1089747	+	101	150015789	-	Cbei_0903	-	prophage LambdaBa04, GP54
898	 29.51	0	1089740..1089922	+	60	150015790	-	Cbei_0904	-	hypothetical protein
899	 30.59	0	1089953..1090390	+	145	150015791	-	Cbei_0905	-	hypothetical protein
900	 31.83	0	1090390..1092054	+	554	150015792	-	Cbei_0906	-	phage terminase
901	 33.25	0	1092072..1093295	+	407	150015793	-	Cbei_0907	-	phage portal protein
902	 33.16	0	1093246..1093839	+	197	150015794	-	Cbei_0908	-	HK97 family phage prohead protease
903	 32.67	0	1093859..1095061	+	400	150015795	-	Cbei_0909	-	HK97 family phage major capsid protein
904	 30.88	0	1095161..1095445	+	94	150015796	-	Cbei_0910	-	uncharacterized phage protein
905	 31.86	0	1095442..1095780	+	112	150015797	-	Cbei_0911	-	phage head-tail adaptor, putative
906	 31.14	0	1095785..1096240	+	151	150015798	-	Cbei_0912	-	hypothetical protein
907	 28.46	0	1096242..1096733	+	163	150015799	-	Cbei_0913	-	hypothetical protein
908	 31.68	0	1096744..1097835	+	363	150015800	-	Cbei_0914	-	hypothetical protein
909	 33.33	0	1097855..1098286	+	143	150015801	-	Cbei_0915	-	phage-like element pbsx protein XkdM
910	 29.68	0	1098348..1098758	+	136	150015802	-	Cbei_0916	-	hypothetical protein
911	 33.02	0	1099046..1099999	+	317	150015803	-	Cbei_0917	-	hypothetical protein
912	 35.90	+1	1100203..1101060	+	285	150015804	-	Cbei_0918	-	hypothetical protein
913	 33.85	0	1101076..1101843	+	255	150015805	-	Cbei_0919	-	cell wall binding repeat-containing protein
914	 28.29	0	1101852..1102763	+	303	150015806	-	Cbei_0920	-	hypothetical protein
915	 32.71	0	1102772..1103092	+	106	150015807	-	Cbei_0921	-	hypothetical protein
916	 27.07	-1	1103109..1103555	+	148	150015808	-	Cbei_0922	-	hypothetical protein
917	 33.05	0	1103558..1104625	+	355	150015809	-	Cbei_0923	-	baseplate J family protein
918	 32.07	0	1104627..1106450	+	607	150015810	-	Cbei_0924	-	hypothetical protein
919	 29.70	0	1106452..1107057	+	201	150015811	-	Cbei_0925	-	phage-like element pbsx protein XkdT
920	 36.04	+1	1107072..1108550	+	492	150015812	-	Cbei_0926	-	hypothetical protein
921	 29.30	0	1108578..1108850	+	90	150015813	-	Cbei_0927	-	hypothetical protein
922	 28.70	0	1108843..1109058	+	71	150015814	-	Cbei_0928	-	hypothetical protein
923	 30.38	0	1109236..1109472	+	78	150015815	-	Cbei_0929	-	hypothetical protein
924	 31.31	0	1109488..1109883	+	131	150015816	-	Cbei_0930	-	hypothetical protein
925	 29.78	0	1109954..1110742	+	262	150015817	-	Cbei_0931	-	glycoside hydrolase family protein
926	 25.34	-1	1111208..1111570	-	120	150015818	-	Cbei_0932	-	XRE family transcriptional regulator
927	 31.66	0	1111658..1112134	+	158	150015819	-	Cbei_0933	-	ABC transporter substrate-binding protein
928	 31.25	0	1112169..1112936	+	255	150015820	-	Cbei_0934	-	ABC transporter related
929	 30.81	0	1112968..1113759	+	263	150015821	-	Cbei_0935	-	binding-protein-dependent transport systems inner membrane component
930	 31.09	0	1114063..1114419	+	118	150015822	-	Cbei_0936	-	LrgA family protein
931	 31.23	0	1114459..1115172	+	237	150015823	-	Cbei_0937	-	LrgB family protein
932	 26.21	-1	1115508..1116644	+	378	150015824	-	Cbei_0938	-	hypothetical protein
933	 30.19	0	1116818..1117867	-	349	150015825	-	Cbei_0939	-	D-galactose-binding periplasmic protein precursor
934	 32.14	0	1118041..1118625	-	194	150015826	-	Cbei_0940	-	flavin reductase domain-containing protein
935	 30.84	0	1118731..1120053	-	440	150015827	-	Cbei_0941	-	Serine-type D-Ala-D-Ala carboxypeptidase
936	 30.84	0	1120219..1120941	-	240	150015828	-	Cbei_0942	-	glutamine amidotransferase
937	 29.43	0	1120960..1122318	-	452	150015829	-	Cbei_0943	-	hypothetical protein
938	 26.21	-1	1122593..1124557	+	654	150015830	-	Cbei_0944	-	hypothetical protein
939	 28.80	0	1124574..1126934	+	786	150015831	-	Cbei_0945	-	peptidase U32
940	 33.21	0	1127088..1129448	+	786	150015832	-	Cbei_0946	-	recombination and DNA strand exchange inhibitor protein
941	 32.51	0	1129624..1130352	+	242	150015833	-	Cbei_0947	-	hypothetical protein
942	 33.33	0	1130634..1131269	-	211	150015834	-	Cbei_0948	-	hypothetical protein
943	 30.59	0	1131730..1132530	+	266	150015835	-	Cbei_0949	-	glycoside hydrolase family protein
944	 32.94	0	1133610..1134866	+	418	150015836	-	Cbei_0950	-	PTS system lactose/cellobiose family IIC subunit
945	 31.39	0	1134917..1135225	+	102	150015837	-	Cbei_0951	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
946	 30.38	0	1135239..1135577	+	112	150015838	-	Cbei_0952	-	phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
947	 29.81	0	1135777..1138476	+	899	150015839	-	Cbei_0953	-	sigma-54 factor interaction domain-containing protein
948	 27.50	0	1138631..1141405	+	924	150015840	-	Cbei_0954	-	sigma-54 factor interaction domain-containing protein
949	 28.61	0	1141528..1141950	+	140	150015841	-	Cbei_0955	-	PTS system fructose subfamily IIA component
950	 29.51	0	1141965..1142435	+	156	150015842	-	Cbei_0956	-	PTS system sorbose subfamily IIB component
951	 35.42	+1	1142450..1143214	+	254	150015843	-	Cbei_0957	-	phosphotransferase system PTS, sorbose-specific IIC subunit
952	 31.43	0	1143201..1144040	+	279	150015844	-	Cbei_0958	-	PTS system mannose/fructose/sorbose family IID component
953	 30.73	0	1144108..1145106	+	332	150015845	-	Cbei_0959	-	sugar isomerase (SIS)
30.63	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.